Editorially curated · om-dengue-2022-23-genomic-epidemiology
Oman 2022–23 Dengue Genomic Epidemiology Study
Near-complete dengue virus genomes generated from 162 positive samples using long-read amplicon-based sequencing; DENV-2 genotype II-F1.1 predominated, with DENV-1 and DENV-3 also detected.
01 / Project overview
What the record establishes.
- Geographic scope
- Oman; Sultan Qaboos University Hospital cohort
- Project type
- outbreak genomic epidemiology study
- Research domain
- dengue whole-genome sequencing and genomic epidemiology
- Years
- 2022–2023
- Lifecycle status
- Published study
- Status basis
- Peer-reviewed article available online 9 May 2026; journal volume 170 is assigned to September 2026.
- Status evidence date
- 2026-05-09
- Scale
- 162 DENV-positive patient samples; near-complete viral genomes generated by long-read amplicon-based sequencing.
02 / Organizations and population
Who and what the project connects.
- Lead organizations
- Sultan Qaboos University Hospital / University Medical City
- Partner organizations
- King Abdullah University of Science and Technology
- Organism / population
- 162 DENV-positive patient samples from Sultan Qaboos University Hospital, Oman
03 / Data and access
What exists and how it can be reached.
Data types
- whole-genome sequencing
- long-read amplicon sequencing
- phylogenetic analysis
Data access
Open-access peer-reviewed article; no durable public sequence accession was verified as of 2026-08-22. Sequence-level public access remains unverified.
Identifiers
- DOI
10.1016/j.ijid.2026.108748 - PMID
42114647
04 / Evidence and provenance
Why the record is included.
Inclusion basis
Distinct Oman-focused dengue genomic epidemiology study. Exact DOI, PMID, title and DENV-specific title fragments were absent from the frozen 951-record v0.2 preview.
Editorial note
Public metadata confirms 162 DENV-positive samples and long-read near-complete genomes. Repository/accession searches on 22 August 2026 did not verify a durable sequence accession, so Atlas must not claim public sequence-level data access. The publication includes KAUST-affiliated coauthors; this record is public-source curation only and does not authorize outreach.
Sources
- peer-reviewed publication Verified 2026-09-05
- peer-reviewed publication Verified 2026-09-05
- institutional publication record Verified 2026-09-05
Release v0.3.0