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مراجَع تحريريًا · ae-prosopis-cineraria-reference-genome-2022

UAE Prosopis cineraria (Ghaf) Reference Genome 2022

الإماراتBiodiversity, conservation and evolutionCompleted / retained

De novo near-chromosomal reference genome and annotation for the UAE national tree Prosopis cineraria, combining Illumina short reads, PacBio long reads, Omni-C scaffolding and transcriptome evidence to support studies of desert adaptation and legume genome evolution.

01 / نظرة عامة على المشروع

ما الذي يثبته السجل.

النطاق الجغرافي
One wild Prosopis cineraria tree sampled in Sweihan, Al Ain, Abu Dhabi, UAE
نوع المشروع
reference genome sequencing and annotation
مجال البحث
plant reference genomics, desert adaptation and comparative genomics
السنوات
2022–2022
حالة المشروع
published reference genome
أساس تحديد الحالة
Peer-reviewed genome paper published 31 July 2022; sequencing data are deposited under PRJNA838117 and the assembly is represented by NCBI ASM2901754v1/GCF_029017545.1.
تاريخ دليل الحالة
2022-07-31
الحجم
~691.86 Mb final assembly; 2,271 scaffolds; ~41.4 Mb scaffold N50; 99% BUSCO completeness; sequencing included ~213x Illumina, ~65x PacBio and ~306 million Omni-C reads.

02 / المؤسسات والمجتمع

من وما الذي يربطه المشروع.

الجهات القائدة
Khalifa Center for Genetic Engineering and Biotechnology, United Arab Emirates University · Department of Biology, College of Science, United Arab Emirates University
الجهات الشريكة
Center for Genomics and Systems Biology, New York University Abu Dhabi · University of Georgia · New York University
الكائن / المجتمع
Ghaf tree (Prosopis cineraria)

03 / البيانات والإتاحة

ما الموجود وكيف يمكن الوصول إليه.

أنواع البيانات

  • Illumina whole-genome shotgun sequencing
  • PacBio long-read sequencing
  • Omni-C proximity-ligation sequencing
  • RNA sequencing
  • de novo genome assembly
  • genome annotation

إتاحة البيانات

The publication reports raw genomic, PacBio, Omni-C and transcriptome sequencing under NCBI BioProject PRJNA838117; the reference assembly is represented by GCF_029017545.1/GCA_029017545.1, and assembled-genome/predicted-protein files are also deposited at Zenodo DOI 10.5281/zenodo.6720540.

المعرّفات

  • DOI10.3390/ijms23158503
  • PMID35955640
  • PMCIDPMC9369113
  • BioProjectPRJNA838117
  • RefSeq AssemblyGCF_029017545.1
  • GenBank AssemblyGCA_029017545.1
  • DOI10.5281/zenodo.6720540

04 / الدليل والمصدر

لماذا أُدرج هذا السجل.

أساس الإدراج

Distinct completed UAE reference-genome project with peer-reviewed publication, durable BioProject and assembly identifiers, and direct downstream reuse by the separately curated 2025 UAE Ghaf population-genomics study.

ملاحظة تحريرية

Preserve as distinct from the later EAD-M42 Ghaf genome/methylation project. Once both AE-C01 and AE-C02 are present in the same composed checkpoint, add only the directly evidenced reference-genome relationship rather than conflating project identities.

المصادر

  1. peer-reviewed publication تم التحقق في 2026-09-05
  2. peer-reviewed publication index تم التحقق في 2026-09-05
  3. official sequence repository تم التحقق في 2026-09-05
  4. official sequence repository تم التحقق في 2026-09-05
  5. data repository تم التحقق في 2026-09-05

الإصدار v0.3.0

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