{"schemaVersion":"1.0.0","release":{"id":"v0.2.0","title":"Nuqta Atlas v0.2.0","released":"2026-08-26","lastVerified":"2026-08-26","region":"Gulf Cooperation Council","stats":{"publicRecords":953,"editorialRecords":170,"repositorySeries":783,"reviewQueue":5601,"publicSourceRows":2178,"repositoryDiscoverySourceRows":1811,"uniqueDirectBioProjectUrls":1830,"sourceBioProjectAccessionsReported":1818,"countries":{"Bahrain":14,"Kuwait":182,"Oman":108,"Qatar":273,"Saudi Arabia":301,"United Arab Emirates":105},"domains":{"Agriculture, food and veterinary genomics":149,"Biodiversity, conservation and evolution":35,"Data platforms, biobanks and infrastructure":43,"Environmental and microbial genomics":158,"Human health and population genomics":233,"Other genomic research":58,"Pathogen genomics and infectious disease":277},"lifecycle":{"Active / operational":104,"Completed / retained":42,"Other / unstated":18,"Planned / proposed":6,"Repository record":783},"evidenceGrades":{"A":873,"B":80}},"inclusionRule":"Evidence-backed genomics projects with an explicit connection to one or more GCC states through sample origin, a submitting or data-producing institution, or an explicit regional research scope.","repositoryMethod":"NCBI BioProject was searched using exact quoted GCC country names across all fields. Repeated submissions sharing country, submitter, registration date, data type, and narrative were grouped into one series.","caveats":["Nuqta Atlas is a living public index, not a clinical database.","Repository registration confirms a durable record and regional connection; it does not establish that a broader programme is currently active.","Country counts overlap because one record may cover multiple GCC states.","Participant totals must not be summed across parent-child records or overlapping cohorts.","Grade-C candidates remain outside the public release pending corroboration.","The source workbook reports 1,818 BioProject accessions; this provenance figure is not used as a derived public-release total because it does not reconcile exactly to the normalized source table."]},"records":[{"id":"ae-100-dates-genome-project","name":"100 Dates! Genome Sequencing Project","displayTitle":"100 Dates! Genome Sequencing Project","aliases":["100 Dates Project","100 Dates Genome Sequencing Project"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"UAE-led international date-palm collection spanning 12 countries","projectType":"crop comparative genomics consortium","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"agricultural genomics, crop diversity, and breeding","organismPopulation":"Date palm cultivars (Phoenix dactylifera)","leadOrganizations":["New York University Abu Dhabi Center for Genomics and Systems Biology","United Arab Emirates University"],"partnerOrganizations":["University of Baghdad","international date-palm researchers and germplasm holders"],"startYear":2012,"endYear":2015,"lifecycleStatus":"completed major initial dataset","lifecycleGroup":"Completed / retained","statusBasis":"NYU Abu Dhabi described active collaboration through 2015, and the consortium published whole-genome resequencing of its multi-country cultivar panel.","statusEvidenceDate":"2015-10-01","description":"UAE-led effort to sequence diverse date-palm cultivars, resolve population structure and domestication, and generate breeding-relevant variants.","scaleSummary":"62 cultivars from 12 countries in the principal resequencing release; approximately seven million SNPs. Early ambition extended to hundreds or more genomes.","dataTypes":["plant whole-genome resequencing","SNPs","population structure","cultivar metadata"],"accessionIds":[],"identifiers":[],"dataAccess":"Publication and deposited sequence data where cited by the paper.","primarySourceUrl":"https://nyuad.nyu.edu/en/news/latest-news/honors-and-awards/2015/february/100-dates-project-wins-prestigious-prize.html","inclusionBasis":"Named, multi-country, multi-cultivar crop-genomics project with a reusable variant resource.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Historical project. Do not confuse with Qatar's separate WCM-Q date-palm genome program.","sources":[{"id":"public:ae-100-dates-genome-project:s01","type":"primary record source","rank":1,"url":"https://nyuad.nyu.edu/en/news/latest-news/honors-and-awards/2015/february/100-dates-project-wins-prestigious-prize.html","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-100-dates-genome-project:s02","type":"additional record source","rank":2,"url":"https://research.uaeu.ac.ae/en/publications/whole-genome-re-sequencing-of-date-palms-yields-insights-into-div/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-100-dates-genome-project:s03","type":"additional record source","rank":3,"url":"https://nyuad.nyu.edu/en/news/latest-news/science-and-technology/2015/october/nyuad-university-of-baghdad-sign-research-agreement.html","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"ae-abu-dhabi-biobank","name":"Abu Dhabi Biobank","displayTitle":"Abu Dhabi Biobank","aliases":["M42 Abu Dhabi Biobank"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi, with national research relevance","projectType":"population and clinical biobank","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"biobanking, genomics, regenerative medicine, and precision health","organismPopulation":"UAE residents and patients; includes cord-blood donors","leadOrganizations":["Department of Health - Abu Dhabi","M42"],"partnerOrganizations":["Abu Dhabi Stem Cells Center"],"startYear":2024,"endYear":null,"lifecycleStatus":"operational","lifecycleGroup":"Active / operational","statusBasis":"DoH inaugurated the integrated biobank on 3 April 2026; M42 reports more than 900,000 samples stored.","statusEvidenceDate":"2026-04-03","description":"Integrated biobank linking biological samples with genomic, clinical, and lifestyle information for early detection, personalized care, research, and cell-therapy development.","scaleSummary":"Designed for more than 100,000 cord-blood units and up to five million biosamples; M42 reports over 900,000 stored samples.","dataTypes":["cord blood","blood and tissue biospecimens","genomic data","clinical data","lifestyle data"],"accessionIds":[],"identifiers":[],"dataAccess":"Governed institutional access; no open participant-level data release identified.","primarySourceUrl":"https://www.doh.gov.ae/en/news/doh-inaugurates-abu-dhabi-biobank","inclusionBasis":"Nationally important operating biobank with large stated capacity and explicit genomic linkage.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The program was announced before formal inauguration; 2024 is treated as program start and 2026 as operational launch.","sources":[{"id":"public:ae-abu-dhabi-biobank:s01","type":"primary record source","rank":1,"url":"https://www.doh.gov.ae/en/news/doh-inaugurates-abu-dhabi-biobank","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-abu-dhabi-biobank:s02","type":"additional record source","rank":2,"url":"https://m42.ae/who-we-are/about-m42/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-abu-dhabi-biobank:s03","type":"additional record source","rank":3,"url":"https://m42.ae/what-we-do/integrated-health-solutions/abu-dhabi-biobank/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"ae-abu-dhabi-newborn-genetic-screening","name":"Abu Dhabi Newborn Genetic Screening Programme","displayTitle":"Abu Dhabi Newborn Genetic Screening Programme","aliases":["Newborn Genetic Screening Programmes"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi emirate; initial sites at Kanad Hospital and Danat Al Emarat","projectType":"clinical genome screening program","domainGroup":"Human health and population genomics","researchDomain":"newborn genomics and rare-disease early detection","organismPopulation":"newborn infants in participating Abu Dhabi hospitals","leadOrganizations":["Department of Health - Abu Dhabi"],"partnerOrganizations":["M42","Kanad Hospital","Danat Al Emarat Hospital for Women and Children"],"startYear":2025,"endYear":null,"lifecycleStatus":"active phased rollout","lifecycleGroup":"Active / operational","statusBasis":"DoH launched the programs on 18 August 2025 and identified the first participating hospitals.","statusEvidenceDate":"2025-08-18","description":"Genome-based newborn screening intended to identify actionable childhood disorders before symptoms and connect families to confirmatory care.","scaleSummary":"Whole-genome screening for more than 815 treatable childhood-onset conditions; participant count not yet reported.","dataTypes":["whole-genome sequencing","newborn screening","clinical confirmation"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical results; no public research dataset identified.","primarySourceUrl":"https://www.doh.gov.ae/en/news/doh-launches-newborn-genetic-screening-programmes","inclusionBasis":"Named genome-wide newborn screening program with a defined disease scope and implementation sites.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Clinical program, not a public cohort. Distinct from Dubai's Little Falcon rapid diagnostic project.","sources":[{"id":"public:ae-abu-dhabi-newborn-genetic-screening:s01","type":"primary record source","rank":1,"url":"https://www.doh.gov.ae/en/news/doh-launches-newborn-genetic-screening-programmes","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ae-abu-dhabi-precision-oncology","name":"Abu Dhabi Personalised Precision Medicine Programme for Oncology","displayTitle":"Abu Dhabi Personalised Precision Medicine Programme for Oncology","aliases":["Precision Medicine Programme for Oncology"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi emirate","projectType":"clinical precision-oncology program","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"cancer genomics, hereditary cancer, and cascade screening","organismPopulation":"Emirati cancer patients and relatives; initial focus on breast cancer","leadOrganizations":["Department of Health - Abu Dhabi"],"partnerOrganizations":["Mubadala Health","Cleveland Clinic Abu Dhabi","New York University Abu Dhabi","Mohamed bin Zayed University of Artificial Intelligence","G42 Healthcare"],"startYear":2022,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"DoH reported in December 2024 that the program had supported 256 Emirati cancer patients and screened relatives.","statusEvidenceDate":"2024-12-01","description":"Clinical pathway using hereditary cancer genomics and precision medicine to tailor surveillance, treatment, and family cascade testing.","scaleSummary":"256 Emirati cancer patients; 47-gene hereditary cancer screen; 207 relatives reported assessed by December 2024.","dataTypes":["cancer gene panel","germline variants","clinical phenotypes","cascade testing"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical access only; aggregate reporting is public.","primarySourceUrl":"https://genome.gov.ae/media-centre/news/department-of-health-abu-dhabi-launches-the-first-personalised-precision-medicine-programme-for-oncology-in-the-region/","inclusionBasis":"Named multi-patient cancer-genomics implementation with quantitative outcomes and family cascade testing.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Initial breast-cancer focus has broader hereditary-cancer relevance; no open tumor/genome dataset identified.","sources":[{"id":"public:ae-abu-dhabi-precision-oncology:s01","type":"primary record source","rank":1,"url":"https://genome.gov.ae/media-centre/news/department-of-health-abu-dhabi-launches-the-first-personalised-precision-medicine-programme-for-oncology-in-the-region/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-abu-dhabi-precision-oncology:s02","type":"additional record source","rank":2,"url":"https://www.doh.gov.ae/en/news/ad-precision-medicine-programme-supports-256-emirati-cancer-patients","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-camel-diseases-reference-centre","name":"WOAH Collaborating Centre for Camel Diseases","displayTitle":"WOAH Collaborating Centre for Camel Diseases","aliases":["ADAFSA Reference Centre for Camel Diseases","Camel Diseases Laboratory"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi-based, serving the Middle East and international partners","projectType":"pathogen genomics and veterinary reference platform","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"animal pathogen genomics, surveillance, and One Health","organismPopulation":"Dromedary camels and camel pathogens","leadOrganizations":["Abu Dhabi Agriculture and Food Safety Authority"],"partnerOrganizations":["World Organisation for Animal Health"],"startYear":2022,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"WOAH designated the ADAFSA veterinary laboratories as its first Middle East Collaborating Centre for Camel Diseases in June 2022; an active 2025-2028 twinning program was endorsed with Mongolia.","statusEvidenceDate":"2026-01-28","description":"Regional reference center applying advanced sequencing and pathogen genetic characterization to camel-disease diagnosis, surveillance, research, training, and outbreak response.","scaleSummary":"Official pages document advanced genetic sequencing capacity and regional activities; a single consolidated public sample count was not found.","dataTypes":["pathogen genome sequencing","genetic characterization","diagnostic assays","surveillance isolates","biobanking"],"accessionIds":[],"identifiers":[],"dataAccess":"Reference-laboratory services and collaborations; no unified public sequence portal identified.","primarySourceUrl":"https://rr-middleeast.woah.org/en/news/adafsa-collaborating-centre/","inclusionBasis":"National/regional enabling platform with an explicit pathogen genetic-characterization mandate.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Broader than a single sequencing project; include as an enabling veterinary-genomics platform.","sources":[{"id":"public:ae-camel-diseases-reference-centre:s01","type":"primary record source","rank":1,"url":"https://rr-middleeast.woah.org/en/news/adafsa-collaborating-centre/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-camel-diseases-reference-centre:s02","type":"additional record source","rank":2,"url":"https://www.adafsa.gov.ae/en/mediahub/news/Pages/28012026.aspx","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-dubai-covid19-wgs","name":"Dubai COVID-19 Whole-Genome Sequencing Study","displayTitle":"Dubai COVID-19 Whole-Genome Sequencing Study","aliases":["UAE First Full Genome Sequencing of SARS-CoV-2"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Dubai","projectType":"pathogen sequencing cohort","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"infectious disease genomics and outbreak epidemiology","organismPopulation":"SARS-CoV-2 from COVID-19 cases in Dubai","leadOrganizations":["Mohammed Bin Rashid University of Medicine and Health Sciences","Dubai COVID-19 Command and Control Centre"],"partnerOrganizations":["Dubai Health Authority","Al Jalila Foundation","United Arab Emirates University","University of Sharjah","New York University Abu Dhabi"],"startYear":2020,"endYear":2021,"lifecycleStatus":"completed historical study","lifecycleGroup":"Completed / retained","statusBasis":"The consortium announced its sequencing study in 2020 and subsequently published the Dubai viral-genome analysis.","statusEvidenceDate":"2021-01-01","description":"Early multi-institutional effort to sequence SARS-CoV-2 cases and reconstruct introductions and transmission in Dubai.","scaleSummary":"Original target 240 cases; early analysis reported 115 complete genomes.","dataTypes":["viral whole-genome sequencing","phylogenetics","epidemiological metadata"],"accessionIds":[],"identifiers":[],"dataAccess":"Publication and deposited viral sequences where listed by the paper; no standalone current portal.","primarySourceUrl":"https://www.mbru.ac.ae/news/dubai-command-control-center-announces-uaes-first-full-genome-sequencing-of-virus-causing-covid-19/","inclusionBasis":"Named multi-sample pathogen-genomics initiative with a defined cohort and published output.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Overlaps temporally with the later centrally coordinated national SARS-CoV-2 surveillance project; retain separately as a preceding Dubai study.","sources":[{"id":"public:ae-dubai-covid19-wgs:s01","type":"primary record source","rank":1,"url":"https://www.mbru.ac.ae/news/dubai-command-control-center-announces-uaes-first-full-genome-sequencing-of-virus-causing-covid-19/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-dubai-covid19-wgs:s02","type":"additional record source","rank":2,"url":"https://repository.mbru.ac.ae/entities/publication/b2dc374c-a44b-47e3-9763-ae53eaf00aa9","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-dubai-robotic-biobank","name":"Dubai Robotic Biobank","displayTitle":"Dubai Robotic Biobank","aliases":["Al Jalila Foundation Biobank","Dubai Health Biobank"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Dubai","projectType":"planned automated clinical and research biobank","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"biobanking and translational genomics","organismPopulation":"Dubai/UAE clinical and research participants","leadOrganizations":["Al Jalila Foundation","Mohammed Bin Rashid University of Medicine and Health Sciences"],"partnerOrganizations":["Dubai Health Authority","Dubai Health"],"startYear":2022,"endYear":null,"lifecycleStatus":"in development; opening not independently verified","lifecycleGroup":"Planned / proposed","statusBasis":"The official project page still describes the facility as scheduled rather than open; the original 2022 announcement targeted 2023 and a later page referenced 2025.","statusEvidenceDate":"2026-08-15","description":"Planned robotic biobank intended to automate biospecimen handling and support medical discovery, genetic research, and personalized medicine.","scaleSummary":"Planned capacity of seven million specimens.","dataTypes":["biospecimens","automated sample management","linked research data"],"accessionIds":[],"identifiers":[],"dataAccess":"No operational data-access mechanism identified.","primarySourceUrl":"https://aljalilafoundation.ae/our-projects/biobank/","inclusionBasis":"Named large-capacity enabling biobank with official institutional documentation.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Schedule has slipped; do not label operational without a formal opening source. Distinct from the operational Abu Dhabi Biobank.","sources":[{"id":"public:ae-dubai-robotic-biobank:s01","type":"primary record source","rank":1,"url":"https://aljalilafoundation.ae/our-projects/biobank/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-dubai-robotic-biobank:s02","type":"additional record source","rank":2,"url":"https://aljalilafoundation.ae/en/dubai-to-launch-first-robotic-biobank-in-the-uae-to-advance-medical-research-and-discovery/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-egp-pharmacogenomics","name":"Emirati Genome Program Pharmacogenomics Integration","displayTitle":"Emirati Genome Program Pharmacogenomics Integration","aliases":["UAE Pharmacogenomics Programme","Malaffi PGx Reports"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi clinical network with national EGP participants","projectType":"clinical pharmacogenomics implementation","domainGroup":"Human health and population genomics","researchDomain":"pharmacogenomics and precision prescribing","organismPopulation":"Consenting Emirati Genome Program participants","leadOrganizations":["Department of Health - Abu Dhabi","M42"],"partnerOrganizations":["Malaffi health information exchange","Abu Dhabi healthcare providers"],"startYear":2023,"endYear":null,"lifecycleStatus":"operational","lifecycleGroup":"Active / operational","statusBasis":"DoH announced clinician access to participant pharmacogenomic reports through Malaffi in September 2024 following the 2023 implementation agreement.","statusEvidenceDate":"2024-09-01","description":"EGP-derived pharmacogenomic reports are integrated into the health-information exchange to help clinicians select and dose medicines according to inherited variation.","scaleSummary":"Population scale not separately reported; available to consented EGP participants with generated reports.","dataTypes":["pharmacogenomic variants","clinical decision support","electronic health records"],"accessionIds":[],"identifiers":[],"dataAccess":"Authorized clinicians through Malaffi; patients participate through EGP consent.","primarySourceUrl":"https://www.doh.gov.ae/en/news/doh-enables-healthcare-providers-to-personalised-treatment-options-through-pharmacogenomic-reports","inclusionBasis":"Named national translational genomics deployment embedded in routine clinical infrastructure.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Direct downstream use of EGP data, not a new cohort.","sources":[{"id":"public:ae-egp-pharmacogenomics:s01","type":"primary record source","rank":1,"url":"https://www.doh.gov.ae/en/news/doh-enables-healthcare-providers-to-personalised-treatment-options-through-pharmacogenomic-reports","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-egp-pharmacogenomics:s02","type":"additional record source","rank":2,"url":"https://genome.gov.ae/initiatives/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-emirati-genome-program","name":"Emirati Genome Program","displayTitle":"Emirati Genome Program","aliases":["EGP","Abu Dhabi Genome Program"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"National; Emirati citizens across all seven emirates","projectType":"national population genomics program","domainGroup":"Human health and population genomics","researchDomain":"human population genomics and precision medicine","organismPopulation":"Emirati nationals","leadOrganizations":["Emirates Genome Council","M42","Department of Health - Abu Dhabi"],"partnerOrganizations":["Ministry of Health and Prevention","health authorities and collection sites across the UAE"],"startYear":2019,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"M42's current program page reports 780,000 UAE-national participants and 1,123+ supporting organizations.","statusEvidenceDate":"2026-08-15","description":"The UAE flagship population-genomics program maps Emirati genetic variation and links genomic, clinical, and health-system data to support preventive, predictive, and personalized care.","scaleSummary":"780,000 participants reported by M42; national target historically stated as one million. A research release analyzed 43,608 whole genomes and produced a variome containing 421,605,069 small variants.","dataTypes":["whole-genome sequencing","small variants","structural variants","clinical data","pharmacogenomics"],"accessionIds":["EGAD50000001558"],"identifiers":[{"scheme":"EGA","value":"EGAD50000001558"}],"dataAccess":"Controlled human-genomic access through EGA for the published 43,608-genome dataset; broader program data are not open.","primarySourceUrl":"https://m42.ae/what-we-do/integrated-health-solutions/emirati-genome-program/","inclusionBasis":"National flagship program with a very large reusable cohort and controlled population-variant dataset.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Umbrella program. The Emirati Reference Genome Platform, Emirati pangenome, pharmacogenomics reports, premarital screening, and some clinical pilots are recorded separately as named downstream initiatives and should not be summed as independent participants.","sources":[{"id":"public:ae-emirati-genome-program:s01","type":"primary record source","rank":1,"url":"https://m42.ae/what-we-do/integrated-health-solutions/emirati-genome-program/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-emirati-genome-program:s02","type":"additional record source","rank":2,"url":"https://www.medrxiv.org/content/10.1101/2025.09.12.25334546v1","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-emirati-genome-program:s03","type":"additional record source","rank":3,"url":"https://ega-archive.org/datasets/EGAD50000001558","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-emirati-genome-program:s04","type":"additional record source","rank":4,"url":"https://genome.gov.ae/initiatives/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-emirati-genome-program:s05","type":"additional record source","rank":5,"url":"https://www.doh.gov.ae/en/news/Department%20Of%20Health%20unveils%20worlds%20most%20comprehensive%20Genome%20Program","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":5},{"id":"ae-emirati-reference-genome-platform","name":"Emirati Reference Genome Program and Platform","displayTitle":"Emirati Reference Genome Program and Platform","aliases":["ERGP","UAE Reference Genome","Emirati Reference Genome Platform"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"National; platform hosted in Abu Dhabi","projectType":"population reference genome and clinical interpretation platform","domainGroup":"Human health and population genomics","researchDomain":"human population genomics and variant interpretation","organismPopulation":"Emirati nationals","leadOrganizations":["Department of Health - Abu Dhabi","Khalifa University","M42"],"partnerOrganizations":["Dubai Health Authority","Mohammed Bin Rashid University of Medicine and Health Sciences","United Arab Emirates University","University of Sharjah","New York University Abu Dhabi","University of Lubeck"],"startYear":null,"endYear":2024,"lifecycleStatus":"completed study; operational platform","lifecycleGroup":"Active / operational","statusBasis":"The Emirates Genome Council approved the reference-genome framework and platform launch in June 2024; DoH describes itself as hosting and developing the current platform.","statusEvidenceDate":"2026-07-30","description":"Population-specific reference created to improve Emirati variant interpretation, diagnosis, and personalized treatment, with a hosted platform for researchers and clinicians.","scaleSummary":"50,000 study samples; official reporting described representation of more than 140,000 nationals and 5,296,683 novel variants.","dataTypes":["whole-genome sequencing","population reference genome","variant database","clinical interpretation"],"accessionIds":[],"identifiers":[],"dataAccess":"Hosted access by application or inquiry; no public individual-level release identified.","primarySourceUrl":"https://www.doh.gov.ae/en/research/the-emirati-reference-genome-programme","inclusionBasis":"Named national reference-genome project with a large sample base and reusable interpretation platform.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"A downstream/reference component of the Emirati Genome Program. The study cohort and the number of nationals represented are different quantities.","sources":[{"id":"public:ae-emirati-reference-genome-platform:s01","type":"primary record source","rank":1,"url":"https://www.doh.gov.ae/en/research/the-emirati-reference-genome-programme","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-emirati-reference-genome-platform:s02","type":"additional record source","rank":2,"url":"https://genome.gov.ae/media-centre/news/khaled-bin-mohamed-bin-zayed-chairs-emirates-genome-council-meeting-and-approves-framework-for-advancing-personalised-and-preventive-medicine/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-emirati-t2t-pangenome","name":"Emirati Telomere-to-Telomere Pangenome","displayTitle":"Emirati Telomere-to-Telomere Pangenome","aliases":["Emirati Pangenome","EGP long-read pangenome"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"National Emirati cohort","projectType":"population pangenome dataset","domainGroup":"Human health and population genomics","researchDomain":"human population genomics and complete genome assembly","organismPopulation":"30 Emirati nationals","leadOrganizations":["M42","Emirati Genome Program"],"partnerOrganizations":["PacBio"],"startYear":null,"endYear":2025,"lifecycleStatus":"completed dataset; controlled archive available","lifecycleGroup":"Active / operational","statusBasis":"EGA lists the study and data, and the associated publication describes the Emirati diploid telomere-to-telomere reference resource.","statusEvidenceDate":"2025-01-01","description":"Long-read Emirati pangenome designed to capture sequence and structural variation missing from linear references.","scaleSummary":"30 nationals and 60 haplotype assemblies; associated reporting describes 58 complete genomes after final quality filtering.","dataTypes":["PacBio HiFi sequencing","diploid assemblies","telomere-to-telomere genomes","structural variants","pangenome"],"accessionIds":["EGAS50000001233"],"identifiers":[{"scheme":"EGA","value":"EGAS50000001233"}],"dataAccess":"Controlled study access through EGA.","primarySourceUrl":"https://ega-archive.org/studies/EGAS50000001233","inclusionBasis":"Named reusable long-read population reference with archived multi-sample data.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Direct EGP child output; participant counts must not be added to EGP. Distinct from MBRU's multi-country Arab Pangenome Reference.","sources":[{"id":"public:ae-emirati-t2t-pangenome:s01","type":"primary record source","rank":1,"url":"https://ega-archive.org/studies/EGAS50000001233","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-emirati-t2t-pangenome:s02","type":"additional record source","rank":2,"url":"https://www.pacb.com/publications/an-emirati-pangenome-incorporating-a-diploid-telomere-to-telomere-reference/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-falcon-genome-project","name":"Falcon Genome Project","displayTitle":"Falcon Genome Project","aliases":["UAE Falcon Genome Project","Peregrine and Saker Falcon Genome Project"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi-led international conservation-genomics collaboration","projectType":"wildlife reference genome project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"biodiversity genomics, evolution, and conservation","organismPopulation":"Peregrine falcon and saker falcon","leadOrganizations":["Environment Agency - Abu Dhabi","Abu Dhabi Falcon Hospital"],"partnerOrganizations":["Cardiff University","BGI-Shenzhen","International Wildlife Consultants","University of Copenhagen"],"startYear":2011,"endYear":2013,"lifecycleStatus":"completed reference genomes","lifecycleGroup":"Completed / retained","statusBasis":"The project began in Abu Dhabi in 2011 and published the peregrine and saker genomes in Nature Genetics on 24 March 2013.","statusEvidenceDate":"2013-03-24","description":"Reference sequencing project investigating genomic adaptations of predatory falcons and producing foundational conservation resources.","scaleSummary":"Two approximately 1.2-Gb reference genomes, each sequenced at more than 100-fold coverage and annotated with about 16,200 genes.","dataTypes":["animal whole-genome sequencing","reference assembly","RNA sequencing","comparative genomics"],"accessionIds":[],"identifiers":[],"dataAccess":"Open publication and sequence resources referenced by the article.","primarySourceUrl":"https://gulfnews.com/uae/environment/falcon-genome-project-launched-in-abu-dhabi-1.747370","inclusionBasis":"Named reference-genome project with high-quality published animal genomes and continuing conservation utility.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Project inputs were individual reference animals, but inclusion is justified by the durable public reference-genome resource and named conservation program.","sources":[{"id":"public:ae-falcon-genome-project:s01","type":"primary record source","rank":1,"url":"https://gulfnews.com/uae/environment/falcon-genome-project-launched-in-abu-dhabi-1.747370","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-falcon-genome-project:s02","type":"additional record source","rank":2,"url":"https://doi.org/10.1038/ng.2588","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-falcon-genome-project:s03","type":"additional record source","rank":3,"url":"https://gulfnews.com/uae/environment/ead-applies-new-knowledge-to-falcon-conservation-1.1165018","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"ae-ghaf-tree-genome","name":"Ghaf Tree Genome Sequencing Project","displayTitle":"Ghaf Tree Genome Sequencing Project","aliases":["Ghaf Genome Mapping Project"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi/UAE national tree","projectType":"plant reference genome and epigenome project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"plant genomics, climate adaptation, and conservation","organismPopulation":"Ghaf tree (Prosopis cineraria)","leadOrganizations":["Environment Agency - Abu Dhabi","M42"],"partnerOrganizations":[],"startYear":2023,"endYear":2024,"lifecycleStatus":"completed reference project","lifecycleGroup":"Completed / retained","statusBasis":"EAD and M42 announced completion of genome sequencing and methylation analysis in January 2024.","statusEvidenceDate":"2024-01-01","description":"Long-read sequencing of the UAE national tree to support conservation, understand desert adaptation, and establish methods for future native-species genomics.","scaleSummary":"More than 240-fold sequencing depth, greater than 99% mapping reported, with genome-wide methylation information.","dataTypes":["Oxford Nanopore whole-genome sequencing","reference assembly","DNA methylation"],"accessionIds":[],"identifiers":[],"dataAccess":"No public sequence accession identified in the official announcement.","primarySourceUrl":"https://www.mediaoffice.abudhabi/en/environment/m42-partners-with-environment-agency-abu-dhabi-to-complete-ghaf-tree-genome-mapping-project/","inclusionBasis":"Named national-species reference-genome project with explicit genomic and epigenomic outputs.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Precursor to the broader EAD-M42 native-plant sequencing initiative launched in 2025.","sources":[{"id":"public:ae-ghaf-tree-genome:s01","type":"primary record source","rank":1,"url":"https://www.mediaoffice.abudhabi/en/environment/m42-partners-with-environment-agency-abu-dhabi-to-complete-ghaf-tree-genome-mapping-project/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-ghaf-tree-genome:s02","type":"additional record source","rank":2,"url":"https://m42.ae/media-resources/news/in-partnership-with-the-environment-agency-abu-dhabi-m42-completes-ground-breaking-ghaf-tree-genome-sequencing/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-houbara-integrated-genetic-management","name":"International Fund for Houbara Conservation Integrated Genetic Management Programme","displayTitle":"International Fund for Houbara Conservation Integrated Genetic Management Programme","aliases":["IFHC Houbara Genetics Programme","Houbara Conservation Breeding Programme"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi-led international breeding and release network across the species' range","projectType":"long-term conservation breeding and genetics program","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"conservation genetics, breeding, and population management","organismPopulation":"Asian and North African houbara bustards","leadOrganizations":["International Fund for Houbara Conservation"],"partnerOrganizations":["Khalifa University","range-state conservation and breeding centers"],"startYear":1982,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"IFHC continues its breeding and release program, and a 2023 Khalifa University partnership explicitly expanded genetics/genomics research and technical capacity.","statusEvidenceDate":"2023-09-07","description":"Multi-decade conservation program using pedigrees and genetic management to maintain diversity across captive breeding, supplementation, and reintroduction populations.","scaleSummary":"Official/IUCN reporting documents hundreds of thousands of chicks produced and birds released; by 2021 cumulative figures exceeded 629,000 chicks and 487,000 releases.","dataTypes":["pedigrees","genetic diversity data","genomics","breeding records","release and tracking data"],"accessionIds":[],"identifiers":[],"dataAccess":"Programmatic/institutional; no unified open genomic dataset identified.","primarySourceUrl":"https://iucn.org/our-union/members/iucn-members/international-fund-houbara-conservation","inclusionBasis":"Large, durable conservation-breeding program with explicit genetic management and a current genomics partnership.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The 1982 start is the conservation-breeding lineage, not the start of modern sequencing. Genomic datasets and sample counts are not publicly consolidated.","sources":[{"id":"public:ae-houbara-integrated-genetic-management:s01","type":"primary record source","rank":1,"url":"https://iucn.org/our-union/members/iucn-members/international-fund-houbara-conservation","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-houbara-integrated-genetic-management:s02","type":"additional record source","rank":2,"url":"https://www.emirates247.com/uae/international-fund-for-houbara-conservation-signs-mou-with-khalifa-university-at-adihex-2023-09-07-1.722246","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-houbara-integrated-genetic-management:s03","type":"additional record source","rank":3,"url":"https://www.wam.ae/en/article/hszrfkq2-ifhc-celebrates-years-houbara-preservation","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"ae-human-phenotype-project-uae","name":"Human Phenotype Project UAE","displayTitle":"Human Phenotype Project UAE","aliases":["HPP UAE"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"UAE; recruitment site in Abu Dhabi","projectType":"deep longitudinal multi-omics cohort","domainGroup":"Human health and population genomics","researchDomain":"human phenomics, multi-omics, microbiome, and precision health","organismPopulation":"UAE citizens and residents aged 18-70","leadOrganizations":["Mohamed bin Zayed University of Artificial Intelligence"],"partnerOrganizations":["Institute for Healthier Living Abu Dhabi","Department of Health - Abu Dhabi"],"startYear":2025,"endYear":null,"lifecycleStatus":"recruiting","lifecycleGroup":"Active / operational","statusBasis":"The official participant site is live and invites eligible citizens and residents to enroll in the longitudinal UAE cohort.","statusEvidenceDate":"2026-08-15","description":"Deep-phenotyping cohort collecting repeated genomic, transcriptomic, microbiome, metabolic, immune, imaging, wearable, and clinical measurements to model health trajectories.","scaleSummary":"No UAE participant target is stated on the public page; the design is longitudinal and multi-visit.","dataTypes":["genomics","transcriptomics","gut microbiome","oral microbiome","vaginal microbiome","metabolomics","immune profiling","imaging","continuous glucose monitoring"],"accessionIds":[],"identifiers":[],"dataAccess":"No public individual-level access policy identified.","primarySourceUrl":"https://hpp.mbzuai.ac.ae/","inclusionBasis":"Named reusable UAE deep-phenotyping and multi-omics cohort with active recruitment.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Public materials describe the follow-up horizon inconsistently as 10 versus 25 years. Sample counts from the Israeli Human Phenotype Project should not be attributed to this UAE cohort.","sources":[{"id":"public:ae-human-phenotype-project-uae:s01","type":"primary record source","rank":1,"url":"https://hpp.mbzuai.ac.ae/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-human-phenotype-project-uae:s02","type":"additional record source","rank":2,"url":"https://mbzuai.ac.ae/institute-of-digital-public-health/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-icba-genebank-desert-life-sciences","name":"ICBA Genebank and Desert Life Sciences Laboratory","displayTitle":"ICBA Genebank and Desert Life Sciences Laboratory","aliases":["ICBA Genebank","Desert Life Sciences Laboratory","DLSL"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Dubai-based international dryland crop and plant collection","projectType":"agricultural genebank and genomics platform","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"crop genomics, biosaline agriculture, and plant genetic resources","organismPopulation":"Salt-, heat-, and drought-tolerant crops and wild plant germplasm","leadOrganizations":["International Center for Biosaline Agriculture"],"partnerOrganizations":["BGI"],"startYear":2000,"endYear":null,"lifecycleStatus":"operational","lifecycleGroup":"Active / operational","statusBasis":"ICBA's current facilities pages describe an operating genebank and the genomics-capable Desert Life Sciences Laboratory established through the 2018 BGI collaboration.","statusEvidenceDate":"2026-08-15","description":"Long-running dryland germplasm collection coupled to a sequencing laboratory supporting whole genomes, genotyping-by-sequencing, transcriptomics, small RNA, and metagenomics.","scaleSummary":"More than 17,000 accessions, roughly 325 species, and material originating from over 150 countries.","dataTypes":["seed accessions","whole-genome sequencing","genotyping-by-sequencing","transcriptomics","small RNA sequencing","metagenomics"],"accessionIds":[],"identifiers":[],"dataAccess":"Germplasm and research collaboration by ICBA request; no single consolidated open genomic portal identified.","primarySourceUrl":"https://www.biosaline.org/content/genebank","inclusionBasis":"Major UAE-based reusable agricultural genetic-resource collection with explicit multi-omics infrastructure.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Start year refers to the genebank's establishment era; the Desert Life Sciences Laboratory component was launched in 2018.","sources":[{"id":"public:ae-icba-genebank-desert-life-sciences:s01","type":"primary record source","rank":1,"url":"https://www.biosaline.org/content/genebank","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-icba-genebank-desert-life-sciences:s02","type":"additional record source","rank":2,"url":"https://www.biosaline.org/about-icba/facilities","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-icba-genebank-desert-life-sciences:s03","type":"additional record source","rank":3,"url":"https://www.biosaline.org/news/2018-03-28-6396","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"ae-jaywun-marine-edna-fish-genomics","name":"Jaywun Fisheries Resource Assessment: Marine eDNA and Fish Genomics","displayTitle":"Jaywun Fisheries Resource Assessment: Marine eDNA and Fish Genomics","aliases":["Fisheries Resources Assessment Survey","Jaywun Marine Genomics Survey"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"UAE territorial waters, coordinated from Abu Dhabi","projectType":"marine biodiversity survey and genomic baseline","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"marine eDNA, fisheries genomics, and conservation","organismPopulation":"Marine communities and major UAE fish species","leadOrganizations":["Environment Agency - Abu Dhabi"],"partnerOrganizations":["M42/G42","OceanX"],"startYear":2023,"endYear":null,"lifecycleStatus":"active program; first phase completed","lifecycleGroup":"Active / operational","statusBasis":"EAD completed the first survey phase in 2023 and continues to present Jaywun as its marine-research platform.","statusEvidenceDate":"2026-08-15","description":"Large fisheries assessment integrating conventional survey methods with the first UAE marine eDNA baseline and genomic sequencing of commercially and ecologically important fish.","scaleSummary":"First phase ran 108 days across 324 sites and collected about 1,500 samples; genomic baseline reported for more than 10 major fish species.","dataTypes":["environmental DNA","fish genome sequencing","fisheries survey","biological specimens","oceanographic measurements"],"accessionIds":[],"identifiers":[],"dataAccess":"Aggregate official results; no public sequence accession identified.","primarySourceUrl":"https://www.mediaoffice.abudhabi/en/environment/environment-agency-abu-dhabi-successfully-completes-first-phase-of-fisheries-resource-assessment-survey-aboard-marine-research-vessel-jaywun/","inclusionBasis":"Major national marine survey with explicit eDNA and multi-species genome-sequencing outputs.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The later OceanX climate expedition is related and may share methods/partners, but is separately documented as a distinct expedition.","sources":[{"id":"public:ae-jaywun-marine-edna-fish-genomics:s01","type":"primary record source","rank":1,"url":"https://www.mediaoffice.abudhabi/en/environment/environment-agency-abu-dhabi-successfully-completes-first-phase-of-fisheries-resource-assessment-survey-aboard-marine-research-vessel-jaywun/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-jaywun-marine-edna-fish-genomics:s02","type":"additional record source","rank":2,"url":"https://www.ead.gov.ae/en/Research-Hub/Jaywun","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-national-arab-genome-1000","name":"National Arab Genome Project","displayTitle":"National Arab Genome Project","aliases":["1000 Arab Genome Project","1000 Emirati Genome Project"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"National/Emirati; led from Khalifa University in Abu Dhabi","projectType":"historical population reference project","domainGroup":"Human health and population genomics","researchDomain":"human population genomics","organismPopulation":"Emirati nationals","leadOrganizations":["Khalifa University"],"partnerOrganizations":[],"startYear":null,"endYear":2021,"lifecycleStatus":"completed historical phase","lifecycleGroup":"Completed / retained","statusBasis":"Peer-reviewed project papers reported the planned 1,000-person resource and later published a UAE population-specific major-allele reference from 120 whole genomes and 33 exomes.","statusEvidenceDate":"2021-01-01","description":"Early Emirati genome project intended to characterize local variation and develop a population-specific reference for disease research and precision medicine.","scaleSummary":"Planned 1,000 Emiratis; published resource used 120 whole genomes and 33 exomes and reported 23,038,090 short variants and 137,713 structural variants.","dataTypes":["whole-genome sequencing","whole-exome sequencing","major-allele reference","structural variants"],"accessionIds":[],"identifiers":[],"dataAccess":"Publication-level resource; no clearly maintained public individual-level portal identified.","primarySourceUrl":"https://khazna.ku.ac.ae/en/publications/a-population-specific-major-allele-reference-genome-from-the-unit/","inclusionBasis":"Named multi-sample precursor that produced a reusable Emirati reference and variant catalog.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Likely a scientific precursor to the later Emirati Reference Genome/EGP ecosystem; do not count as an independent current national program. Exact launch year is not stated consistently.","sources":[{"id":"public:ae-national-arab-genome-1000:s01","type":"primary record source","rank":1,"url":"https://khazna.ku.ac.ae/en/publications/a-population-specific-major-allele-reference-genome-from-the-unit/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-national-arab-genome-1000:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s10038-017-0402-y","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-national-genome-strategy","name":"UAE National Genome Strategy","displayTitle":"UAE National Genome Strategy","aliases":["National Genome Strategy 2023-2033"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"National","projectType":"national strategy and enabling framework","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"genomics infrastructure, governance, research, and clinical translation","organismPopulation":"UAE population and national genomics ecosystem","leadOrganizations":["Emirates Genome Council"],"partnerOrganizations":["federal and emirate health authorities","universities","healthcare and biotechnology organizations"],"startYear":2023,"endYear":2033,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The official strategy page presents the 2023-2033 strategy and its five pillars as the governing framework for current national initiatives.","statusEvidenceDate":"2026-08-15","description":"Ten-year national framework for genomic research, data platforms, talent, regulation, and precision-health implementation.","scaleSummary":"Five strategic pillars covering legislation and governance, harmonized secure data infrastructure, research and innovation, clinical applications, and partnerships/talent.","dataTypes":["policy framework","genomic data infrastructure","clinical implementation"],"accessionIds":[],"identifiers":[],"dataAccess":"Not a participant dataset; strategy and public information are open.","primarySourceUrl":"https://genome.gov.ae/about/national-genome-strategy/","inclusionBasis":"National enabling platform that organizes multiple genome programs and clinical applications.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Not a cohort. It is the current policy umbrella and overlaps administratively with the Emirates Genome Council and EGP.","sources":[{"id":"public:ae-national-genome-strategy:s01","type":"primary record source","rank":1,"url":"https://genome.gov.ae/about/national-genome-strategy/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-national-genome-strategy:s02","type":"additional record source","rank":2,"url":"https://u.ae/en/about-the-uae/strategies-initiatives-and-awards/strategies-plans-and-visions/health/national-genome-strategy","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-national-sars-cov2-genomic-surveillance","name":"UAE SARS-CoV-2 Genomic Surveillance Project","displayTitle":"UAE SARS-CoV-2 Genomic Surveillance Project","aliases":["Abu Dhabi SARS-CoV-2 Genomic Surveillance Project"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"All seven emirates; centrally coordinated from Abu Dhabi","projectType":"national pathogen genomic surveillance","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"infectious disease genomics and public health","organismPopulation":"SARS-CoV-2-positive clinical samples in the UAE","leadOrganizations":["Abu Dhabi Public Health Centre"],"partnerOrganizations":["Department of Health - Abu Dhabi","national and private diagnostic laboratories","airports and ports"],"startYear":2021,"endYear":2022,"lifecycleStatus":"completed pandemic surveillance phases","lifecycleGroup":"Completed / retained","statusBasis":"The peer-reviewed program report documents central initiation in January 2021, four surveillance phases, and coverage of all seven emirates.","statusEvidenceDate":"2023-02-01","description":"Coordinated national viral sequencing and variant-surveillance system combining diagnostic laboratories, sentinel sampling, and border/port surveillance.","scaleSummary":"Four operational phases spanning the seven emirates; sample totals varied by phase and are reported in the program paper.","dataTypes":["viral whole-genome sequencing","variant surveillance","clinical sampling","travel and port sampling","epidemiological data"],"accessionIds":[],"identifiers":[],"dataAccess":"Aggregate results in the publication; sequence access follows the paper's deposition statements.","primarySourceUrl":"https://www.sciencedirect.com/science/article/pii/S1567134823000096","inclusionBasis":"Centrally coordinated national, multi-phase pathogen-genomics surveillance program.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Successor/umbrella relative to early Dubai sequencing; phases should not be counted as separate projects.","sources":[{"id":"public:ae-national-sars-cov2-genomic-surveillance:s01","type":"primary record source","rank":1,"url":"https://www.sciencedirect.com/science/article/pii/S1567134823000096","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ae-native-plant-genome-sequencing","name":"EAD-M42 Native Plant Genome Sequencing Initiative","displayTitle":"EAD-M42 Native Plant Genome Sequencing Initiative","aliases":["Native Species Plant Genome Sequencing Project"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi and native UAE habitats","projectType":"multi-species conservation genomics program","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"plant biodiversity genomics and climate resilience","organismPopulation":"Twelve native UAE plant species","leadOrganizations":["Environment Agency - Abu Dhabi","M42"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"EAD and M42 launched the 12-species sequencing collaboration on 9 December 2025.","statusEvidenceDate":"2025-12-09","description":"Expansion of the Ghaf pilot to sequence native plants, characterize adaptive diversity, and guide conservation and restoration under climate stress.","scaleSummary":"Twelve additional native plant species; 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collaboration continuity unclear","lifecycleGroup":"Completed / retained","statusBasis":"Partners signed the agreement in December 2023 and completed a 20-day research expedition in June 2024.","statusEvidenceDate":"2024-06-01","description":"Multidisciplinary expedition combining eDNA, microbial analysis, imaging, mapping, and environmental data to study climate impacts on UAE marine ecosystems.","scaleSummary":"Twenty-day expedition; 37 eDNA samples from 19 sites reported, including analysis of microbial community composition.","dataTypes":["environmental DNA","microbial community sequencing","marine specimens","geospatial mapping","oceanographic data"],"accessionIds":[],"identifiers":[],"dataAccess":"No public sequence repository identified.","primarySourceUrl":"https://www.mediaoffice.abudhabi/en/environment/environment-agency-abu-dhabi-partners-with-oceanx-m42-and-bayanat-to-advance-marine-research-and-conservation/","inclusionBasis":"Named multi-site environmental-genomics expedition with a defined eDNA sample set.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Related to the Jaywun eDNA/fish-genomics baseline and should be cross-linked rather than summed as independent national coverage.","sources":[{"id":"public:ae-oceanx-marine-edna:s01","type":"primary record source","rank":1,"url":"https://www.mediaoffice.abudhabi/en/environment/environment-agency-abu-dhabi-partners-with-oceanx-m42-and-bayanat-to-advance-marine-research-and-conservation/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-oceanx-marine-edna:s02","type":"additional record source","rank":2,"url":"https://www.mediaoffice.abudhabi/en/environment/environment-agency-abu-dhabi-partners-with-oceanx-m42-healthcare-and-bayanat-to-research-impact-of-climate-change-on-uae-waters/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-oceanx-marine-edna:s03","type":"additional record source","rank":3,"url":"https://m42.ae/media-resources/news/m42-s-environmental-sciences-team-wins-biotechnology-environmental-services-award-at-middle-east-technology-excellence-awards-2024/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"ae-plant-genetic-resources-centre","name":"Plant Genetic Resources Centre","displayTitle":"Plant Genetic Resources Centre","aliases":["Al Ain Plant Genetic Resources Centre","EAD Plant Genetic Resource Centre"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Al Ain, Abu Dhabi; 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Genomic knowledge derives partly from EGP; screening encounters are not independent EGP research participants.","sources":[{"id":"public:ae-premarital-genetic-screening:s01","type":"primary record source","rank":1,"url":"https://mohap.gov.ae/en/w/mohap-announces-mandatory-genetic-testing-as-part-of-premarital-screening-for-emiratis-starting-early-january-2025","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-premarital-genetic-screening:s02","type":"additional record source","rank":2,"url":"https://www.genome.gov.ae/media-centre/news/emirates-genome-council-launches-uae-genome-dialogue-workshop-series/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-sand-gazelle-genetic-diversity","name":"Arabian Sand Gazelle Genetic Diversity Assessment","displayTitle":"Arabian Sand Gazelle Genetic Diversity Assessment","aliases":["Sand Gazelle Genetic Diversity Project"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Managed forests and conservation populations in Abu Dhabi","projectType":"wildlife conservation genetics assessment","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"conservation genetics and population management","organismPopulation":"Arabian sand gazelle (Gazella marica)","leadOrganizations":["Environment Agency - Abu Dhabi"],"partnerOrganizations":[],"startYear":null,"endYear":2016,"lifecycleStatus":"completed initial assessment","lifecycleGroup":"Completed / retained","statusBasis":"EAD's current species page states that it completed a pioneering project assessing genetic diversity of forest sand-gazelle populations; contemporary reporting placed completion in 2016.","statusEvidenceDate":"2026-08-15","description":"Population-genetic assessment designed to inform management of large captive and semi-managed gazelle populations in Abu Dhabi forests.","scaleSummary":"Public sample totals are not stated; EAD notes that managed forests now shelter more than 55,000 gazelles.","dataTypes":["population genetic markers","conservation population data"],"accessionIds":[],"identifiers":[],"dataAccess":"No public genotype dataset identified.","primarySourceUrl":"https://ead.gov.ae/en/discover-our-biodiversity/mammals/arabian-sand-gazelle","inclusionBasis":"Named population-scale conservation-genetics project embedded in a major managed wildlife population.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Methods, marker type, and sample count remain unpublished on the official page; retain with a conservative evidence grade.","sources":[{"id":"public:ae-sand-gazelle-genetic-diversity:s01","type":"primary record source","rank":1,"url":"https://ead.gov.ae/en/discover-our-biodiversity/mammals/arabian-sand-gazelle","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:ae-sand-gazelle-genetic-diversity:s02","type":"additional record source","rank":2,"url":"https://gulfnews.com/uae/environment/abu-dhabi-completes-scientific-assessment-of-sand-gazelle-1.1864504","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ae-sorbonne-marine-edna-monitoring","name":"eDNA-based Monitoring of Marine Fish and Mammals in Abu Dhabi","displayTitle":"eDNA-based Monitoring of Marine Fish and Mammals in Abu Dhabi","aliases":["Sorbonne Abu Dhabi Marine eDNA Project"],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"Abu Dhabi coastal and marine waters","projectType":"marine metabarcoding monitoring project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"biodiversity genomics and ecological monitoring","organismPopulation":"Marine fish and mammals","leadOrganizations":["Sorbonne University Abu Dhabi"],"partnerOrganizations":[],"startYear":2025,"endYear":2027,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The official project registry lists an effective period from 1 May 2025 to 1 May 2027.","statusEvidenceDate":"2026-08-15","description":"Metabarcoding project developing eDNA methods and a regional reference barcode database for non-invasive monitoring of marine vertebrates.","scaleSummary":"Two-year project; 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no annual birth or test total is stated on the official page.","dataTypes":["newborn genomic screening","clinical follow-up"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical/controlled","primarySourceUrl":"https://www.moh.gov.bh/GenomeProject/NewbornGenome","inclusionBasis":"Named national genomic screening extension of the Bahrain National Genome Programme.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Child programme of the national genome programme; do not add its participants to the 50,000 historical collection without unique-person confirmation.","sources":[{"id":"public:bh-newborn-genome-screening:s01","type":"primary record source","rank":1,"url":"https://www.moh.gov.bh/GenomeProject/NewbornGenome","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"gcc-arabian-peninsula-wes-90","name":"Arabian Peninsula Whole-Exome Reference Cohort","displayTitle":"Arabian Peninsula Whole-Exome Reference Cohort","aliases":["Characterization of Arabian Peninsula whole exomes"],"countries":["Saudi Arabia","United Arab Emirates","Oman"],"regionLabel":"Regional GCC","geographicScope":"Saudi Arabia, Oman, United Arab Emirates and Yemen","projectType":"Regional controlled-access population dataset","domainGroup":"Human health and population genomics","researchDomain":"Population variation and medical genomics","organismPopulation":"90 Arabian Peninsula individuals: 23 Saudi, 24 Omani, 19 UAE and 24 Yemeni","leadOrganizations":["University of Porto","Dubai Police General Headquarters"],"partnerOrganizations":[],"startYear":null,"endYear":2022,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The completed cohort was published and deposited in EGA in 2022.","statusEvidenceDate":"2022-10-12","description":"Whole-exome sequencing enriched for untranslated regions to characterize Arabian Peninsula diversity, novel variants and predicted deleterious burden.","scaleSummary":"90 participants; approximately 17,000 novel variants among roughly 145,000 identified variants.","dataTypes":["whole-exome sequencing","UTR sequencing","variant calls"],"accessionIds":["EGAS00001006487","EGAD00001009162","PMID:36325056","DOI:10.1016/j.isci.2022.105336"],"identifiers":[{"scheme":"EGA","value":"EGAS00001006487"},{"scheme":"EGA","value":"EGAD00001009162"},{"scheme":"PubMed","value":"PMID:36325056"},{"scheme":"DOI","value":"DOI:10.1016/j.isci.2022.105336"}],"dataAccess":"Controlled access through EGA","primarySourceUrl":"https://ega-archive.org/datasets/EGAD00001009162","inclusionBasis":"Multi-GCC regional sequence cohort with a durable controlled-access repository record.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The paper summary mentions 90 final participants; a supplementary-table label referenced 94 samples. Use the EGA dataset's 90-sample count.","sources":[{"id":"public:gcc-arabian-peninsula-wes-90:s01","type":"primary record source","rank":1,"url":"https://ega-archive.org/datasets/EGAD00001009162","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-arabian-peninsula-wes-90:s02","type":"additional record source","rank":2,"url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9619305/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"gcc-ctga","name":"Catalogue for Transmission Genetics in Arabs","displayTitle":"Catalogue for Transmission Genetics in Arabs","aliases":["CTGA","CTGA Database","Catalogue of Genetic Disorders in the Arab World"],"countries":["Saudi Arabia","United Arab Emirates","Qatar","Kuwait","Bahrain","Oman"],"regionLabel":"Regional GCC","geographicScope":"Arab world, including all six GCC states","projectType":"Curated variant and genetic-disease database","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Human genetics, inherited disease and clinical interpretation","organismPopulation":"Arab individuals and families reported in biomedical literature","leadOrganizations":["Centre for Arab Genomic Studies"],"partnerOrganizations":["Sheikh Hamdan Bin Rashid Al Maktoum Award for Medical Sciences"],"startYear":2004,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The official database is currently searchable, describes continuous curation, and reports current disease, gene and variant totals.","statusEvidenceDate":"2026-08-15","description":"Open, continuously curated compendium of Arab genetic disorders, associated genes, variants, phenotypes and supporting literature.","scaleSummary":"Current site reports 2,540 diseases, 2,468 genes and 5,702 variants across the Arab world.","dataTypes":["curated variants","disease-gene associations","phenotypes","bibliographic evidence","disease records","gene-disease relationships","pathogenic variants","bibliographic curation"],"accessionIds":[],"identifiers":[],"dataAccess":"Open web search; bulk export not verified","primarySourceUrl":"https://cags.org.ae/en/ctga-overview","inclusionBasis":"Operational region-wide variant resource explicitly covering every GCC state.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"UAE-based regional resource. Do not split country-filtered CTGA records into separate national projects unless a distinct national release exists. Regional rather than UAE-only content; include as a UAE-led enabling data platform, not a UAE patient cohort.","sources":[{"id":"public:gcc-ctga:s01","type":"primary record source","rank":1,"url":"https://cags.org.ae/en/ctga-overview","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-ctga:s02","type":"additional record source","rank":2,"url":"https://cags.org.ae/en/search-database","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-ctga:s03","type":"additional record source","rank":3,"url":"https://cags.org.ae/en/ctga-submit-to-database","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-ctga:s04","type":"additional record source","rank":4,"url":"https://academic.oup.com/nar/article/34/suppl_1/D602/1132251","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-ctga:s05","type":"additional record source","rank":5,"url":"https://cags.org.ae/en/ctga","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-ctga:s06","type":"additional record source","rank":6,"url":"https://cags.org.ae/en/news/details/87/celebration-of-the-7th-anniversary-of-the-ctga-database","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":6},{"id":"gcc-eastern-arabia-ancient-genomes","name":"Ancient Genomes from Eastern Arabia","displayTitle":"Ancient Genomes from Eastern Arabia","aliases":["Tylos-period Bahrain genomes"],"countries":["Bahrain","Oman"],"regionLabel":"Regional GCC","geographicScope":"Bahrain and Oman / Eastern Arabia","projectType":"Ancient-DNA project","domainGroup":"Human health and population genomics","researchDomain":"Archaeogenomics and population history","organismPopulation":"Ancient human remains from Eastern Arabia, including four Tylos-period genomes from Bahrain","leadOrganizations":["Wellcome Sanger Institute"],"partnerOrganizations":["Regional archaeology collaborators"],"startYear":null,"endYear":2024,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The studies were deposited in ENA in 2024 with linked project records.","statusEvidenceDate":"2024-03-06","description":"Generated ancient human genomes to investigate ancestry, mobility and population history in Eastern Arabia.","scaleSummary":"Parent ancient-genomes study plus a four-genome Tylos-period Bahrain child project.","dataTypes":["ancient DNA","whole-genome sequencing","population genetics"],"accessionIds":["PRJEB31781","PRJEB71330"],"identifiers":[{"scheme":"BioProject","value":"PRJEB31781"},{"scheme":"BioProject","value":"PRJEB71330"}],"dataAccess":"Public ENA study metadata and linked sequence data","primarySourceUrl":"https://www.ebi.ac.uk/ena/browser/view/PRJEB31781","inclusionBasis":"Cross-GCC ancient-genomics project with durable repository accessions.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Treat PRJEB71330 as a child dataset of the broader Eastern Arabia project when counting initiatives.","sources":[{"id":"public:gcc-eastern-arabia-ancient-genomes:s01","type":"primary record source","rank":1,"url":"https://www.ebi.ac.uk/ena/browser/view/PRJEB31781","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-eastern-arabia-ancient-genomes:s02","type":"additional record source","rank":2,"url":"https://www.ebi.ac.uk/ena/browser/view/PRJEB71330","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"gcc-gme-variome","name":"Greater Middle East Variome","displayTitle":"Greater Middle East Variome","aliases":["GME Variome","Greater Middle East Variome Project"],"countries":["Saudi Arabia","United Arab Emirates","Qatar","Kuwait","Oman"],"regionLabel":"Regional GCC","geographicScope":"Greater Middle East; Arabian Peninsula component includes Saudi Arabia, Qatar, Kuwait, United Arab Emirates and Oman","projectType":"Regional population exome reference","domainGroup":"Human health and population genomics","researchDomain":"Population genomics and Mendelian disease discovery","organismPopulation":"1,111 unrelated individuals from six Greater Middle East subregions","leadOrganizations":["Greater Middle East Variome Consortium"],"partnerOrganizations":["King Faisal Specialist Hospital and Research Centre","UC San Diego","Rockefeller University","Broad Institute","King Faisal Specialist Hospital & Research Centre investigators","Regional and international institutions"],"startYear":null,"endYear":2016,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The reference cohort and variome were published in 2016; current third-party clinical annotation documentation still describes the data source, while the original browser's maintenance is uncertain.","statusEvidenceDate":"2026-08-15","description":"Generated a coding-variation reference for an underrepresented region and demonstrated its use in filtering candidate variants for recessive disease discovery.","scaleSummary":"1,111 whole exomes; the 2018 Kuwait study reports 214 Arabian Peninsula samples, including 45 from Kuwait.","dataTypes":["whole-exome sequencing","allele frequencies","population structure","variant frequencies","autozygosity"],"accessionIds":["PMID:27428751","PMCID:PMC5019950","DOI:10.1038/ng.3592"],"identifiers":[{"scheme":"PubMed","value":"PMID:27428751"},{"scheme":"PMCID","value":"PMCID:PMC5019950"},{"scheme":"DOI","value":"DOI:10.1038/ng.3592"}],"dataAccess":"Variant frequencies remain available through annotation products; original project browser status requires review","primarySourceUrl":"https://www.nature.com/articles/ng.3592","inclusionBasis":"Landmark regional population-genomics project with multi-GCC representation and reusable variant frequencies.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Bahrain is not listed among the project countries in the corroborating primary/secondary sources found; do not label this all-six-GCC. Regional rather than Saudi-exclusive; include as historical/adjacent infrastructure and do not assign the full 1,111 sample count to Saudi Arabia.","sources":[{"id":"public:gcc-gme-variome:s01","type":"primary record source","rank":1,"url":"https://www.nature.com/articles/ng.3592","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-gme-variome:s02","type":"additional record source","rank":2,"url":"https://pubmed.ncbi.nlm.nih.gov/27428751/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-gme-variome:s03","type":"additional record source","rank":3,"url":"https://illumina.github.io/IlluminaConnectedAnnotationsDocumentation/data-sources/gme/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"gcc-klebsiella-st14","name":"Arabian Peninsula Carbapenemase-Producing Klebsiella pneumoniae ST14 Study","displayTitle":"Arabian Peninsula Carbapenemase-Producing Klebsiella pneumoniae ST14 Study","aliases":[],"countries":["Saudi Arabia","United Arab Emirates","Kuwait","Bahrain","Oman"],"regionLabel":"Regional GCC","geographicScope":"Bahrain, Kuwait, Oman, Saudi Arabia and the United Arab Emirates","projectType":"Regional pathogen-genomics study","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Antimicrobial resistance and hospital epidemiology","organismPopulation":"Carbapenemase-producing Klebsiella pneumoniae ST14 isolates","leadOrganizations":["PTE Medical Microbiology"],"partnerOrganizations":["Arabian Peninsula clinical laboratories"],"startYear":null,"endYear":2021,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The multi-country sequence study was deposited in ENA/NCBI BioProject in 2021.","statusEvidenceDate":"2021-07-08","description":"Compared genomic diversity, resistance and relatedness of a high-risk Klebsiella pneumoniae lineage sampled across five GCC states.","scaleSummary":"Five GCC states represented; isolate count should be read from the linked study records.","dataTypes":["bacterial whole-genome sequencing","antimicrobial-resistance profiling","phylogenomics"],"accessionIds":["PRJEB44852"],"identifiers":[{"scheme":"BioProject","value":"PRJEB44852"}],"dataAccess":"Public ENA/NCBI study and sequence data","primarySourceUrl":"https://www.ebi.ac.uk/ena/browser/view/PRJEB44852","inclusionBasis":"Explicit multi-GCC pathogen-genomics study with a durable accession.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Qatar is not listed in the repository metadata found. Also appears in automated BioProject discovery; merge by accession.","sources":[{"id":"public:gcc-klebsiella-st14:s01","type":"primary record source","rank":1,"url":"https://www.ebi.ac.uk/ena/browser/view/PRJEB44852","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-klebsiella-st14:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJEB44852","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"gcc-marine-amr-monitoring","name":"GCC Marine Antimicrobial Resistance Monitoring Pilot","displayTitle":"GCC Marine Antimicrobial Resistance Monitoring Pilot","aliases":["Establishing a marine monitoring programme to assess antibiotic resistance"],"countries":["United Arab Emirates","Kuwait","Bahrain","Oman"],"regionLabel":"Regional GCC","geographicScope":"Marine sites in Bahrain, Kuwait, Oman and the United Arab Emirates","projectType":"Regional environmental genomic-surveillance project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"One Health, marine microbiology and antimicrobial resistance","organismPopulation":"Marine bacterial communities and isolates from four GCC states","leadOrganizations":["Centre for Environment, Fisheries and Aquaculture Science"],"partnerOrganizations":["Regional GCC sampling partners"],"startYear":null,"endYear":2022,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The study has a public BioProject registered in 2022 and associated sequence records.","statusEvidenceDate":"2022-02-03","description":"Piloted a harmonized marine-monitoring approach for detecting antibiotic-resistant organisms and resistance determinants across GCC coastal environments.","scaleSummary":"Four GCC states represented; exact sample total should be read from linked BioSamples.","dataTypes":["metagenomics","bacterial sequencing","antimicrobial-resistance profiling"],"accessionIds":["PRJNA691754"],"identifiers":[{"scheme":"BioProject","value":"PRJNA691754"}],"dataAccess":"Public NCBI BioProject and linked sequence data","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA691754","inclusionBasis":"Explicit multi-GCC monitoring project with a durable primary repository accession.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Also appears in the automated BioProject sweep; merge by accession.","sources":[{"id":"public:gcc-marine-amr-monitoring:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA691754","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"gcc-pulsenet-middle-east-wgs","name":"PulseNet Middle East Whole-Genome Sequencing Implementation","displayTitle":"PulseNet Middle East Whole-Genome Sequencing Implementation","aliases":["PulseNet Middle East WGS network"],"countries":["Oman"],"regionLabel":"Regional GCC","geographicScope":"Oman-hosted Middle East regional foodborne-disease surveillance network","projectType":"Regional pathogen-genomics network","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Foodborne-disease surveillance and outbreak response","organismPopulation":"Foodborne bacterial pathogens across participating Middle Eastern laboratories","leadOrganizations":["PulseNet Middle East"],"partnerOrganizations":["Oman Ministry of Health","Regional public-health laboratories"],"startYear":2024,"endYear":null,"lifecycleStatus":"implementation","lifecycleGroup":"Active / operational","statusBasis":"The Oman Ministry of Health hosted a 2024 regional meeting explicitly focused on implementation of WGS for the network.","statusEvidenceDate":"2024-05-20","description":"Coordinates adoption of whole-genome sequencing, laboratory methods and data exchange for regional foodborne-disease surveillance and outbreak investigation.","scaleSummary":"Regional network; participating-country and sequence totals were not stated in the official meeting announcement.","dataTypes":["bacterial whole-genome sequencing","surveillance metadata","outbreak typing"],"accessionIds":[],"identifiers":[],"dataAccess":"Network/controlled; no shared public accession identified","primarySourceUrl":"https://moh.gov.om/en/media-center/news/regional-meeting-on-implementation-of-wgs-for-pulsenet-middle-east-foodborne-diseases-surveillance-network-begins/","inclusionBasis":"Official regional WGS-surveillance implementation activity hosted by a GCC health ministry.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The announcement proves implementation work, not complete WGS deployment in every GCC state.","sources":[{"id":"public:gcc-pulsenet-middle-east-wgs:s01","type":"primary record source","rank":1,"url":"https://moh.gov.om/en/media-center/news/regional-meeting-on-implementation-of-wgs-for-pulsenet-middle-east-foodborne-diseases-surveillance-network-begins/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"gcc-qphi-pan-arab-genomes-array","name":"QPHI Pan-Arab Genomes and Genotyping Array Initiative","displayTitle":"QPHI Pan-Arab Genomes and Genotyping Array Initiative","aliases":["Pan-Arab Array","Pan-Arab imputation panel","Pan Arab Array Project"],"countries":["Saudi Arabia","United Arab Emirates","Qatar","Kuwait","Bahrain","Oman"],"regionLabel":"Regional GCC","geographicScope":"Qatar plus 19 other Arab countries, including Bahrain, Kuwait, Oman, Saudi Arabia and the United Arab Emirates","projectType":"Regional population-genomics and tool-development initiative","domainGroup":"Human health and population genomics","researchDomain":"Population reference genomics, genotyping and imputation","organismPopulation":"Qatar population and participants from 19 other Arab countries","leadOrganizations":["Qatar Precision Health Institute","Qatar Genome Programme"],"partnerOrganizations":["Qatar Foundation","Thermo Fisher Scientific"],"startYear":null,"endYear":null,"lifecycleStatus":"in development","lifecycleGroup":"Planned / proposed","statusBasis":"The current QPHI project page documents the genomic input panel, array-design objectives and manufacturing partnership, but does not state that the array is operational.","statusEvidenceDate":"2026-08-15","description":"Combines a large Qatar reference panel with genomes from across the Arab world to build population-specific genotyping and imputation tools.","scaleSummary":"More than 14,669 Qatar whole genomes plus more than 2,946 genomes from 19 other Arab countries.","dataTypes":["whole-genome sequencing","genotyping array","imputation panel","allele frequencies","whole-genome reference panel","SNP array","population structure"],"accessionIds":[],"identifiers":[],"dataAccess":"Tools and programme information public; individual-level genomes controlled","primarySourceUrl":"https://www.qphi.org.qa/transitional-genomics/pan-arab-array","inclusionBasis":"Current regional genomics initiative explicitly representing every GCC state.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Likely a child/translation layer of Qatar's national precision-health ecosystem. Merge with a duplicate Qatar record during release build. Input genomes overlap QGP/QPHI. Country count language on the page is internally awkward: it says 19 other countries but lists 20 names including the UAE; retain the official aggregate of 2,946 without asserting a corrected count.","sources":[{"id":"public:gcc-qphi-pan-arab-genomes-array:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/transitional-genomics/pan-arab-array","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"gcc-uae-arab-pangenome","name":"UAE-Based Arab Pangenome Reference","displayTitle":"UAE-Based Arab Pangenome Reference","aliases":["UPR","Arab Pangenome Reference","APR"],"countries":["Saudi Arabia","United Arab Emirates","Oman"],"regionLabel":"Regional GCC","geographicScope":"UAE-based cohort with participants originating from UAE, Saudi Arabia, Oman and five non-GCC Arab countries","projectType":"Regional pangenome reference","domainGroup":"Human health and population genomics","researchDomain":"Human pangenomics and genomic medicine","organismPopulation":"53 healthy Arab residents of the UAE, including 50 unrelated adults and one trio","leadOrganizations":["Mohammed Bin Rashid University of Medicine and Health Sciences","Dubai Health","Dubai Health Center for Applied and Translational Genomics"],"partnerOrganizations":[],"startYear":null,"endYear":2025,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The reference, public files, code and primary paper were released in 2025.","statusEvidenceDate":"2025-07-24","description":"Built 106 haplotype-resolved assemblies and nuclear and mitochondrial pangenomes from PacBio HiFi, Oxford Nanopore ultralong and Hi-C data.","scaleSummary":"53 participants; 111.96 Mb of sequence absent from existing references, 8.94 million population-specific small variants and 235,195 structural variants reported.","dataTypes":["PacBio HiFi","Oxford Nanopore ultralong reads","Hi-C","de novo assemblies","pangenome graphs","VCF","PacBio HiFi sequencing","Oxford Nanopore ultralong sequencing","phased assemblies","pangenome graph","small and structural variants"],"accessionIds":["PRJNA1108179","SRP509490","PRJNA1151091-PRJNA1151118","PRJNA1152014-PRJNA1152091","PMID:40707445","DOI:10.1038/s41467-025-61645-w","10.5281/zenodo.13755057"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1108179"},{"scheme":"Sequence study","value":"SRP509490"},{"scheme":"BioProject range","value":"PRJNA1151091-PRJNA1151118"},{"scheme":"BioProject range","value":"PRJNA1152014-PRJNA1152091"},{"scheme":"PubMed","value":"PMID:40707445"},{"scheme":"DOI","value":"DOI:10.1038/s41467-025-61645-w"},{"scheme":"DOI","value":"10.5281/zenodo.13755057"}],"dataAccess":"Open assemblies, pangenome files, VCF and code; raw reads in SRA","primarySourceUrl":"https://www.mbru.ac.ae/the-arab-pangenome-reference/","inclusionBasis":"Open regional reference with multi-GCC participants, durable repository accessions and reproducible code.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"UAE-led; likely duplicated in the UAE country inventory and should be merged by DOI/accession. Not the same as the Emirati-only T2T pangenome or the Emirati Reference Genome Platform. All participants resided in the UAE but represented UAE, Saudi, Omani, Jordanian, Egyptian, Moroccan, Syrian, and Yemeni backgrounds.","sources":[{"id":"public:gcc-uae-arab-pangenome:s01","type":"primary record source","rank":1,"url":"https://www.mbru.ac.ae/the-arab-pangenome-reference/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-uae-arab-pangenome:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41467-025-61645-w","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-uae-arab-pangenome:s03","type":"additional record source","rank":3,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1108179","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-uae-arab-pangenome:s04","type":"additional record source","rank":4,"url":"https://github.com/muddinmbru/arab_pangenome_reference","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-uae-arab-pangenome:s05","type":"additional record source","rank":5,"url":"https://doi.org/10.5281/zenodo.15524484","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-uae-arab-pangenome:s06","type":"additional record source","rank":6,"url":"https://www.mbru.ac.ae/news/dubai-health-scientists-publish-first-arab-pangenome-reference-marking-a-milestone-for-precision-medicine/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-uae-arab-pangenome:s07","type":"additional record source","rank":7,"url":"https://doi.org/10.1038/s41467-025-61645-w","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:gcc-uae-arab-pangenome:s08","type":"additional record source","rank":8,"url":"https://zenodo.org/records/13755057","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":8},{"id":"kw-covid-genomes-ml","name":"COVID-19 Genome Sequencing and Machine-Learning Project","displayTitle":"COVID-19 Genome Sequencing and Machine-Learning Project","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait with international consortium inputs","projectType":"Computational pathogen-genomics project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"COVID-19 risk prediction and outbreak detection","organismPopulation":"SARS-CoV-2 genomes and patient symptom datasets","leadOrganizations":["Kuwait University"],"partnerOrganizations":["Kuwait Foundation for the Advancement of Sciences"],"startYear":2020,"endYear":null,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"KFAS lists the project under its 2020 COVID-19 emergency research cycle; no ongoing phase is documented.","statusEvidenceDate":"2026-08-15","description":"Applied machine learning to viral genome and symptom data to predict severity, identify infection clusters and detect emerging mutations.","scaleSummary":"Public record does not state a local genome or patient count.","dataTypes":["viral genomes","clinical symptoms","machine learning"],"accessionIds":[],"identifiers":[],"dataAccess":"Not stated","primarySourceUrl":"https://pure.kfas.org.kw/en/projects/1abe09d3-157f-4777-a034-f42fa69f625f","inclusionBasis":"Officially funded computational genomics project with a distinct analytical objective.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"May reuse international data; regional connection is the Kuwait University-led project rather than necessarily Kuwaiti sample origin.","sources":[{"id":"public:kw-covid-genomes-ml:s01","type":"primary record source","rank":1,"url":"https://pure.kfas.org.kw/en/projects/1abe09d3-157f-4777-a034-f42fa69f625f","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"kw-covid-host-genome","name":"COVID-19 Manifestation and Host Genome Variation Project","displayTitle":"COVID-19 Manifestation and Host Genome Variation Project","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait","projectType":"Host-genomics project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"COVID-19 susceptibility and severity","organismPopulation":"People with COVID-19 in Kuwait","leadOrganizations":["Dasman Diabetes Institute"],"partnerOrganizations":["Kuwait Ministry of Health","Kuwait Foundation for the Advancement of Sciences"],"startYear":2020,"endYear":null,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"KFAS lists the project in its 2020 COVID-19 portfolio; 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Distinct from the historical Kuwait National Genome Center referenced in DDI reporting.","sources":[{"id":"public:kw-national-genome-exposome-vision:s01","type":"primary record source","rank":1,"url":"https://research.kfas.org.kw/en/publications/integrating-the-genome-and-exposome-for-precision-health-in-kuwai/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:kw-national-genome-exposome-vision:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41576-025-00883-6","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:kw-national-genome-exposome-vision:s03","type":"additional record source","rank":3,"url":"https://www.natureasia.com/en/nmiddleeast/article/10.1038/nmiddleeast.2025.217","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"kw-population-exome-variome-291","name":"Kuwaiti Population Exome Variome","displayTitle":"Kuwaiti Population Exome Variome","aliases":["291 Kuwaiti exomes"],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Three native Kuwaiti population subgroups","projectType":"Population reference cohort","domainGroup":"Human health and population genomics","researchDomain":"Population and medical genomics","organismPopulation":"291 unrelated healthy native Kuwaiti Arab individuals","leadOrganizations":["Dasman Diabetes Institute"],"partnerOrganizations":["Kuwait Foundation for the Advancement of Sciences"],"startYear":null,"endYear":2018,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The peer-reviewed study was published in 2018 and reports the completed sequencing and analysis of 291 exomes.","statusEvidenceDate":"2018-12-01","description":"Whole-exome reference study cataloguing coding variation, population structure, pharmacogenomic variants and variants relevant to recessive and complex disorders.","scaleSummary":"291 exomes at median 45×; 170,508 SNVs and 3,341 indels, with 12% of SNVs reported novel.","dataTypes":["whole-exome sequencing","VCF","genotyping"],"accessionIds":["PMID:30409984","DOI:10.1038/s41598-018-34815-8"],"identifiers":[{"scheme":"PubMed","value":"PMID:30409984"},{"scheme":"DOI","value":"DOI:10.1038/s41598-018-34815-8"}],"dataAccess":"Aggregate VCF reported as openly downloadable; availability should be rechecked before reuse","primarySourceUrl":"https://research.kfas.org.kw/en/publications/assessment-of-coding-region-variants-in-kuwaiti-population-implic/","inclusionBasis":"Population-scale reference dataset with primary publication and a stated data route.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The historical FTP endpoint may not be browser-accessible; retain the publication as the authoritative metadata source.","sources":[{"id":"public:kw-population-exome-variome-291:s01","type":"primary record source","rank":1,"url":"https://research.kfas.org.kw/en/publications/assessment-of-coding-region-variants-in-kuwaiti-population-implic/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:kw-population-exome-variome-291:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41598-018-34815-8","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:kw-population-exome-variome-291:s03","type":"additional record source","rank":3,"url":"https://pubmed.ncbi.nlm.nih.gov/30409984/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"kw-population-structure-583","name":"Kuwaiti Fine-Scale Population Structure Cohort","displayTitle":"Kuwaiti Fine-Scale Population Structure Cohort","aliases":["583 Kuwaiti genome-wide SNP cohort"],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait","projectType":"Population genomics cohort","domainGroup":"Human health and population genomics","researchDomain":"Population structure and ancestry","organismPopulation":"583 Kuwaiti individuals across three ancestry-defined subgroups","leadOrganizations":["Dasman Diabetes Institute"],"partnerOrganizations":[],"startYear":null,"endYear":2021,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The completed genome-wide SNP and haplotype analysis was published in 2021.","statusEvidenceDate":"2021-03-23","description":"Analyzed genome-wide SNPs, haplotypes and ancestry sharing to resolve fine-scale heterogeneity and continental connections within the Kuwaiti population.","scaleSummary":"583 Kuwaiti individuals.","dataTypes":["genome-wide SNP genotyping","haplotype analysis"],"accessionIds":["PMID:33753911"],"identifiers":[{"scheme":"PubMed","value":"PMID:33753911"}],"dataAccess":"Publication metadata; individual-level data access not identified","primarySourceUrl":"https://pubmed.ncbi.nlm.nih.gov/33753911/","inclusionBasis":"Durable population cohort with a primary peer-reviewed genomic analysis.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Participants may overlap earlier DDI cohorts; do not sum with the 291-exome cohort as unique people without cohort-level confirmation.","sources":[{"id":"public:kw-population-structure-583:s01","type":"primary record source","rank":1,"url":"https://pubmed.ncbi.nlm.nih.gov/33753911/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"kw-sarscov2-full-genomes","name":"SARS-CoV-2 Full-Genome Sequencing and Genetic Characterization in Kuwait","displayTitle":"SARS-CoV-2 Full-Genome Sequencing and Genetic Characterization in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwaiti Ministry of Health clinical samples","projectType":"Pathogen-genomics project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"COVID-19 genomic epidemiology","organismPopulation":"SARS-CoV-2 from infected patients in Kuwait","leadOrganizations":["Dasman Diabetes Institute"],"partnerOrganizations":["Kuwait Ministry of Health","Kuwait Foundation for the Advancement of Sciences"],"startYear":2020,"endYear":null,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"KFAS records the 2020 emergency-cycle project and describes completed sequencing aims; no current continuation is documented.","statusEvidenceDate":"2026-08-15","description":"Sequenced full SARS-CoV-2 genomes from nasopharyngeal samples to track circulating clades and genetic change in Kuwait.","scaleSummary":"Public project page does not state the number of genomes.","dataTypes":["viral whole-genome sequencing","phylogenetics"],"accessionIds":[],"identifiers":[],"dataAccess":"No project-level accession stated","primarySourceUrl":"https://pure.kfas.org.kw/en/projects/4c19993a-2a0f-4280-8975-477a4e8c3d6e/","inclusionBasis":"Named official national pathogen-sequencing project.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from the host-genome and machine-learning COVID-19 projects below.","sources":[{"id":"public:kw-sarscov2-full-genomes:s01","type":"primary record source","rank":1,"url":"https://pure.kfas.org.kw/en/projects/4c19993a-2a0f-4280-8975-477a4e8c3d6e/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjdb12808","name":"Identification and Genetic Characterization of Fasciola spp. Isolated from Cattle in Saudi Arabia","displayTitle":"Identification and Genetic Characterization of Fasciola spp. Isolated from Cattle in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Fasciola hepatica","leadOrganizations":["SOUTH VALLEY UNIVERSITY, JEDDAH UNIVERSITY"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/01/07; operational lifecycle is not asserted.","statusEvidenceDate":"2022-01-07","description":"DNA was extracted from 120 adult Fasciola worms (extracted from cows slaughtered at the municipal abattoir in Jeddah, Saudi Arabia). A primer pair targeting Cytochrome c oxidase subunit 1 (Cox 1) genes was used for PCR and DNA sequence. Analysis of sequence data including phylogenetic analysis, pairwise nucleotide variations, population diversity indices and Median Joining network was done. PCR amplification was successfully obtained from all examined adult worms. Overall 12 different isolates were successfully amplified.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Random survey","Sequencing","Genome"],"accessionIds":["PRJDB12808"],"identifiers":[{"scheme":"BioProject","value":"PRJDB12808"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB12808","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjdb12808:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB12808","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjdb15678","name":"Complete genome sequence analysis of plant growth-promoting bacterium, Isoptericola sp. AK164 isolated from the rhizosphere of Avicennia marina growing at the Red Sea coast","displayTitle":"Complete genome sequence analysis of plant growth-promoting bacterium, Isoptericola sp. AK164 isolated from the rhizosphere of Avicennia marina growing at the Red Sea coast","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"ACT flea iflavirus","leadOrganizations":["Heribert Hirt, kaust,CDA, BESE, King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/04/11; operational lifecycle is not asserted.","statusEvidenceDate":"2023-04-11","description":"The coastal areas of the Red Sea are one of the unique extreme environments with high biodiversity revealing large microbial communities with a high abundance of Actinobacteria in the mangrove forests of Avicennia marina.Those Actinobacteria are Gram-positive bacteria which show a remarkable range of morphologies, including unicellular cocci or rods and differentiated branched multicellular bacteria.They usually grow in numerous habitats, especially extreme environments, such as salt marshes, hot springs, alkaline saline soils, deep-sea sediments, and the microbiome of a higher eukaryote. The ability of the Actinobacteria to adapt to those extreme environments is correlated to their production of bioactive natural products and secondary metabolites with diverse functions, including the cycling of complex carbon substrates in benthic ocean habitats.On the other hand, Actinobacteria are important plant symbionts that play a crucial role in enhancing plant growth as plant growth promotion bacteria (PGPB) and protection against pathogens. The genus Isoptericola is found to be involved in phosphate uptake and the degradation of cellulose, hemicellulose, and chitin. Noteworthy, it has been revealed that ACC deaminase-producing strains of Isoptericola stimulated the growth of the host plant and influenced flavonoid accumulation, which is known for prominent roles in stress alleviation. There is a need to study this phylum of bacteria as bioactive compound producers along with the metabolism and genetic structure governing this ecological context. Here, we report the genome sequence analysis of Isoptericola sp. AK164, plant growth promoting rhizosphere bacterium isolated from the rhizosphere of Avicennia marina growing at the Red Sea shore in Thuwal, Saudi Arabia, highlighting their plant growth properties and potential biotechnological application. Genome sequencing and analysis, of rhizosphere bacteria e.g. AK164 for their potential plant growth promoting activities under different growth conditions will speed up the applications of biostimulants in smart agriculture system as an eco-friendly solution to mitigate the negative impact of climate change.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJDB15678"],"identifiers":[{"scheme":"BioProject","value":"PRJDB15678"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB15678","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjdb15678:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB15678","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjdb20773","name":"Genome sequencing of  Tenacibaculum mesophilum strain M-16","displayTitle":"Genome sequencing of  Tenacibaculum mesophilum strain M-16","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Tenacibaculum mesophilum","leadOrganizations":["Biology, Sultan Qaboos University"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/05/14; operational lifecycle is not asserted.","statusEvidenceDate":"2025-05-14","description":"Tenacibaculum mesophilum strain M-16 is a marine bacterium isolated from the coastal environment in Oman. This project aims to sequence and analyze the genome of this strain to explore its genetic composition and functional potential. The genomic data will contribute to understanding the diversity, metabolic capabilities, and ecological roles of Tenacibaculum species in marine ecosystems.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Phenotype or Genotype","Sequencing","Genome"],"accessionIds":["PRJDB20773"],"identifiers":[{"scheme":"BioProject","value":"PRJDB20773"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB20773","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjdb20773:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB20773","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjdb35953","name":"Genome sequences of Mycobacterium riyadhense strains","displayTitle":"Genome sequences of Mycobacterium riyadhense strains","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Mycobacterium riyadhense","leadOrganizations":["National Institute of Infectious Diseases, Japan Institute for Health Security"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/09/10; operational lifecycle is not asserted.","statusEvidenceDate":"2025-09-10","description":"Mycobacterium riyadhense has been isolated from human patients in Saudi Arabia. In 2025, we described the first Japanese case of Mycobacterium riyadhense and conducted a comparative genomic analysis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJDB35953"],"identifiers":[{"scheme":"BioProject","value":"PRJDB35953"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB35953","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjdb35953:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB35953","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjdb8463","name":"Pinctada radiata transcriptome","displayTitle":"Pinctada radiata transcriptome","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Pinctada radiata","leadOrganizations":["Genetics and Genomics, The Roslin Institute, The University of Edinburgh"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/06/17; operational lifecycle is not asserted.","statusEvidenceDate":"2019-06-17","description":"Baseline biology of the Qatar pearl oyster (Pinctada imbricata radiata), including disease screen, chemical contaminant monitoring and transcriptome sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJDB8463"],"identifiers":[{"scheme":"BioProject","value":"PRJDB8463"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB8463","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjdb8463:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJDB8463","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb100678","name":"Dual RNA-Seq Uncovers ESX-1- and ESX-5-Dependent Virulence Programs of Mycobacterium marinum in Human and Murine Macrophages","displayTitle":"Dual RNA-Seq Uncovers ESX-1- and ESX-5-Dependent Virulence Programs of Mycobacterium marinum in Human and Murine Macrophages","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Qatar University Health Cluster"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/12/19; operational lifecycle is not asserted.","statusEvidenceDate":"2025-12-19","description":"The secretion systems known as ESX-1 and ESX-5 are critical for the virulence of pathogenic mycobacteria, such as Mycobacterium marinum (Mmar), a close genetic relative of Mycobacterium tuberculosis. To shed light on how these secretion systems drive host-pathogen interactions, we did simultaneous RNA-seq using human THP-1 as well as murine RAW macrophages, infected with wild type Mmar E11 and its ESX-1 and ESX-5 mutants. Our study revealed distinct host specific transcriptomic responses to infection, with murine macrophages exhibiting higher expression of pro-inflammatory genes compared to human cells. However, comparative analysis of transcriptomes of wild type, ESX-1 and ESX-5 mutants identified differentially expressed virulent genes across strains and hosts, highlighting the dynamic regulation of PE/PPE proteins, stress response genes, and components of the ESX systems. Furthermore, functional enrichment analysis of the host responses demonstrated that ESX dependent activation of immune pathways, including interferon signaling, cytokine-mediated responses, and lipid metabolism. Notably, lack of functional ESX-1 or ESX-5 secretion resulted in impaired bacterial virulence gene expression together with reduced host immune activation. Protein–protein interaction analyses were also identified both conserved and host specific immune signatures, including shared antiviral markers and distinct inflammatory mediators, in human and murine macrophages. These findings highlight the pivotal role of ESX systems in mediating Mmar virulence and demonstrate how host species significantly influence transcriptional and immune responses outcomes during mycobacterial infection.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB100678"],"identifiers":[{"scheme":"BioProject","value":"PRJEB100678"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB100678","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb100678:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB100678","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb102062","name":"Molecular characterization of Gotocotyla acanthura from Scomberomorus commerson","displayTitle":"Molecular characterization of Gotocotyla acanthura from Scomberomorus commerson","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["National Research Centre"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/02; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-02","description":"This study characterizes Gotocotyla acanthura (Monogenea: Thoracocotylidae) parasitizing the gills of Scomberomorus commerson in the Arabian Gulf. Morphological analysis using light and scanning electron microscopy revealed specialized clamp structures with sclerotized elements. Molecular sequencing of the 28S ribosomal RNA gene (partial sequence, 853 bp) provides genetic characterization of this parasite species. Samples were collected from Jubail, Saudi Arabia (27.965 N, 49.6787 E) during 2024, contributing to understanding monogenean biodiversity in the region.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB102062","ERP183465"],"identifiers":[{"scheme":"BioProject","value":"PRJEB102062"},{"scheme":"SRA Study","value":"ERP183465"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB102062","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb102062:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB102062","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb102166","name":"This study profiles soil-inhabiting fungi across Saudi Arabia via PacBio-based metabarcoding","displayTitle":"This study profiles soil-inhabiting fungi across Saudi Arabia via PacBio-based metabarcoding","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Tartu"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/11/05; operational lifecycle is not asserted.","statusEvidenceDate":"2025-11-05","description":"Deserts are home to diverse microbial communities important in many ecological processes and strategies for responding to changing climates. We recorded the biodiversity of soil-inhabiting fungi and their predictors in Saudi Arabia via metabarcoding. Alpha diversity of the fungal communities varied greatly, with high diversity in moist montane habitats and very low diversity in hyper-arid regions. The fungal community was dominated by members of the orders Pleosporales, Pezizales, Agaricales, Glomerales, and Sordariales, most of which represented saprotrophic guilds. Modelling analyses showed that soil pH, elevation, vegetation coverage, and vegetation indices substantially impact soil fungi's richness and community composition. These patterns mirror global dryland trends, with low diversity and high evenness in hyper-arid sites but higher richness and ecological differentiation in montane and vegetated regions. Our results demonstrate that vegetation cover, edaphic conditions, and altitude jointly shape fungal diversity in Arabian soils, offering mechanistic insight into community assembly and predicting ecosystem responses to climate change in arid landscapes.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB102166"],"identifiers":[{"scheme":"BioProject","value":"PRJEB102166"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB102166","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb102166:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB102166","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb105718","name":"Whole-genome sequencing of Staphylococcus argenteus clinical isolates from Saudi Arabia","displayTitle":"Whole-genome sequencing of Staphylococcus argenteus clinical isolates from Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Saudi University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/03/18; operational lifecycle is not asserted.","statusEvidenceDate":"2026-03-18","description":"Whole-genome sequencing was performed on eight Staphylococcus argenteus clinical isolates identified in Saudi Arabia to characterize antimicrobial resistance, virulence genes, and phylogenetic relationships. The isolates belonged to ST2250 and formed a distinct cluster relative to global genomes.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB105718"],"identifiers":[{"scheme":"BioProject","value":"PRJEB105718"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB105718","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb105718:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB105718","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb10590","name":"Comparison of the gut microbiota of people in France and Saudi Arabia","displayTitle":"Comparison of the gut microbiota of people in France and Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/08/31; operational lifecycle is not asserted.","statusEvidenceDate":"2015-08-31","description":"The gut microbiota contributes to energy acquisition from food, and changes in the gut microbiome are associated with obesity. The eating habits of Saudis are much different than those of Europeans, and our objective was to compare the fecal microbiota of obese and normal weight Saudis and French.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB10590"],"identifiers":[{"scheme":"BioProject","value":"PRJEB10590"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB10590","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb10590:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB10590","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb109304","name":"Brucella melitensis genomes from Kuwait","displayTitle":"Brucella melitensis genomes from Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["OMICS Research Unit"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/03/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-03-10","description":"This study was aimed to characterize 25 clinical isolates of B. melitensis isolated from patients in Kuwait by WGS","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB109304"],"identifiers":[{"scheme":"BioProject","value":"PRJEB109304"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB109304","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb109304:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB109304","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb109769","name":"Brucella melitensis genomes from Kuwait","displayTitle":"Brucella melitensis genomes from Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["OMICS Research Unit"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/26; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-26","description":"This study was aimed to characterize 22 clinical isolates of B. melitensis isolated from patients in Kuwait by WGS","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB109769"],"identifiers":[{"scheme":"BioProject","value":"PRJEB109769"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB109769","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb109769:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB109769","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb114057","name":"Influenza B genomics in Saudi Arabia 2024-2025","displayTitle":"Influenza B genomics in Saudi Arabia 2024-2025","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah International Medical Research Center"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/02; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-02","description":"Study performed whole-genome sequencing of six influenza B virus isolates, including one fatal pediatric case, obtained from patients at King Abdulaziz Medical City, Riyadh. Five isolates, including the fatal case, were grouped within the V1A.3a.2 subclade C.5.6, whereaswhile one non-fatal isolate clustered within a closely related subclade","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB114057"],"identifiers":[{"scheme":"BioProject","value":"PRJEB114057"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB114057","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb114057:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB114057","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb11821","name":"The mitochondrial genome of Vespertilio murinus was assembled from short Illumina reads","displayTitle":"The mitochondrial genome of Vespertilio murinus was assembled from short Illumina reads","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["CENTRE FOR GEOGENETICS"],"partnerOrganizations":[],"startYear":2016,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2016/01/01; operational lifecycle is not asserted.","statusEvidenceDate":"2016-01-01","description":"A specimen of Vespertilio murinus was collected on 13 May 2014 from the Breeding Centre for Endangered Arabian Wildlife, Sharjah, United Arab Emirates. The species was unambiguously identified based on molecular (Cytochrome b gene) and morphological characters. This represents the first record of V. murinus from the Arabian Peninsula. A revised checklist of the Vespertilionidae is presented for the Arabian Peninsula which includes 28 species belonging to 11 genera. A phylogeny for the Arabian vespertilionid species is also presented showing the paraphyly of Eptesicus and the position of Nyctalus within Pipistrellus.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB11821"],"identifiers":[{"scheme":"BioProject","value":"PRJEB11821"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB11821","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb11821:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB11821","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"accessionIds":["PRJEB123023"],"aliases":[],"countries":["Saudi Arabia"],"dataAccess":"Public repository metadata; access varies by record.","dataTypes":["AMPLICON","METAGENOMIC"],"description":"PacBio HiFi amplicon sequencing evaluates polymerase, primer, and amplicon-length biases in ultra-long-read metabarcoding across fungal mock communities and composite soil environmental DNA samples.","displayTitle":"Polymerase and primer biases in eukaryote ultra-long-read metabarcoding","domainGroup":"Environmental and microbial genomics","endYear":null,"evidenceGrade":"B","geographicScope":"Saudi Arabia sample collection metadata","id":"ncbi-prjeb123023","identifiers":[{"scheme":"BioProject","value":"PRJEB123023"}],"inclusionBasis":"Direct GCC sample-collection metadata in authoritative INSDC records.","lastVerified":"2026-08-26","leadOrganizations":["University of Tartu"],"lifecycleGroup":"Repository record","lifecycleStatus":"repository record","name":"Polymerase and primer biases in eukaryote ultra-long-read metabarcoding","notes":"Editorially normalized to the stable project-level accession; sample and run identifiers remain in private provenance.","organismPopulation":"Fungal mock communities and soil environmental DNA","partnerOrganizations":[],"primarySourceUrl":"https://www.ebi.ac.uk/ena/browser/view/PRJEB123023","projectType":"sequencing project","recordClass":"repository_series","regionLabel":"Saudi Arabia","relatedRecordIds":[],"researchDomain":"Environmental and microbial genomics","scaleSummary":"Project-level record covering PacBio HiFi eukaryotic metabarcoding reads.","sourceCount":1,"sourceKind":"repository_discovery","sources":[{"evidenceGrade":"B","id":"public:ncbi-prjeb123023:s01","lastVerified":"2026-08-26","rank":1,"sourceKind":"repository_discovery","type":"primary record source","url":"https://www.ebi.ac.uk/ena/browser/view/PRJEB123023"}],"startYear":2026,"statusBasis":"Public ENA BioProject registered in 2026; operational lifecycle is not asserted.","statusEvidenceDate":"2026-08-26"},{"id":"ncbi-prjeb12510","name":"Isolation and characterization of NDM-positive Escherichia coli from municipal wastewater in Saudi Arabia","displayTitle":"Isolation and characterization of NDM-positive Escherichia coli from municipal wastewater in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["WDRC KAUST"],"partnerOrganizations":[],"startYear":2016,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2016/07/02; operational lifecycle is not asserted.","statusEvidenceDate":"2016-07-02","description":"The emergence of resistance to last resort antibiotics is a public health concern of global scale. Besides direct person-to-person propagation, environmental pathways might contribute to the dissemination of antibiotic resistance genes (ARGs). Here we described the incidence over a one-year period of blaNDM-1 in the wastewater of Jeddah city, a gene conferring resistance to carbapenem, an antibiotic typically used as a last line of defense against gram-negative bacterial infections. To track the bacteria carrying blaNDM-1, we isolated from the wastewater and sequenced the genome of Escherichia coli PI7, a strain of serotype ST101. The bacteria isolate has genome that encodes for an extensive repertoire of ARGs and exhibits potential virulence traits. Genome sequencing revealed a possible clinical origin of the strain, and a subset of traits that might favor the survival of this strain in the host and the environment. The environmental occurrence of this strain, coupled with the pathogenic, antimicrobial resistance and possible environmental persistence traits of this isolate, place this bacterium as a good model for future environmental fate and persistence studies of enteric pathogens and it’s associated ARGs.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB12510"],"identifiers":[{"scheme":"BioProject","value":"PRJEB12510"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB12510","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb12510:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB12510","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb12627","name":"DNA barcoding the flora of Kuwait","displayTitle":"DNA barcoding the flora of Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["UNIVERSITY OF EDINBURGH"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/01/21; operational lifecycle is not asserted.","statusEvidenceDate":"2017-01-21","description":"This project is a combined ecological and molecular investigation into the diversity of the Kuwaiti Flora and the soil seed bank. It is aimed at extracting DNA barcode regions from plant leaves to build a DNA reference library. Also, to investigate the diversity of species present in the soil by DNA extracting soil samples and using tools such as metagenomics and metabarcoding to verify the utility of the database.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB12627"],"identifiers":[{"scheme":"BioProject","value":"PRJEB12627"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB12627","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb12627:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB12627","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb12701","name":"Geologic and Hydrologic Controls on the Distribution, Diversity, and Activity of Subsurface Microbial Life Hosted in Gabbros and Peridotites in the Samail Ophiolite, Oman","displayTitle":"Geologic and Hydrologic Controls on the Distribution, Diversity, and Activity of Subsurface Microbial Life Hosted in Gabbros and Peridotites in the Samail Ophiolite, Oman","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["UNIVERSITY OF COLORADO - BOULDER"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/07/04; operational lifecycle is not asserted.","statusEvidenceDate":"2019-07-04","description":"This study utilizes shotgun metagenomic sequencing to define microbial community composition, diversity, and function across a broad range of measured geochemical conditions observed in serpentinite aquifers to elucidate geochemical and lithological controls on the energy availability and productivity in aquifers undergoing low-temperature water/rock reaction.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB12701"],"identifiers":[{"scheme":"BioProject","value":"PRJEB12701"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB12701","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb12701:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB12701","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb13888","name":"Solar inactivation of E. coli DSM 1103","displayTitle":"Solar inactivation of E. coli DSM 1103","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["WDRC KAUST"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/03/24; operational lifecycle is not asserted.","statusEvidenceDate":"2017-03-24","description":"Wastewater has been implicated as a source of NDM-harboring bacteria and blaNDM-1 genes. This is of particular relevance in countries like Saudi Arabia where the pressure on water sources is high due to its scarcity, and there are plans to employ treated wastewater in agricultural irrigation. Sunlight can be used to serve as a final barrier to dissemination of contaminants in the environment. However, information is lacking on the effect of solar photoinactivation on ARBs, particularly that of an NDM-harboring bacteria. There is also a lack of information pertaining to the molecular response induced by these bacterium upon solar irradiation. This study examines the decay kinetics of the blaNDM-1-positive E. coli PI-7 upon solar irradiation in buffer and wastewater matrix so as to provide understanding on its fate and persistence upon dissemination into the natural environment. This study revealed differences in the solar inactivation kinetics between the blaNDM-1-positive E. coli PI-7 and a less-virulent blaNDM-1-negative commensal E. coli DSM 1103 in the buffer solution and treated wastewater. The results showed that a minimum of half a day exposure to solar irradiation is required to overcome the lag phase of E. coli prior to achieving inactivation. Although solar irradiation remains useful and effective in reducing E. coli strains by more than 5-log cell, transcriptomics revealed differences in the overall upregulation of protective and repair mechanisms between both E. coli strains. Moreover, subpopulations of the E. coli PI-7 expressed genes related to dormancy and persister cells formation during the late decay phase, which may have accounted for the prolonged persistence of E. coli PI-7. More importantly, this study showed that both E. coli strains displayed upregulation of horizontal gene transfer, antibiotic resistance and virulence functions, with a wider arsenal of such genes being upregulated in E. coli PI-7. The current guidance on the quality pertaining to treated wastewater for use in agricultural irrigation remains limited to assessing the abundance of fecal coliforms. Our findings suggest a need to expand efforts to monitor for the presence and abundance of ARB in the wastewater, particularly for those bacterial pathogens that are commonly associated with foodborne diarrheal diseases. Alternative strategies such as the combination of bacteriophage and solar irradiation can be utilized to minimize potential risks associated with ARB in treated wastewater.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB13888"],"identifiers":[{"scheme":"BioProject","value":"PRJEB13888"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB13888","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb13888:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB13888","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb13939","name":"NGS-based PCR barcodes using rbcL and ITS2 markers","displayTitle":"NGS-based PCR barcodes using rbcL and ITS2 markers","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["UNIVERSITY OF EDINBURGH"],"partnerOrganizations":[],"startYear":2016,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2016/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2016-07-10","description":"Assessment of environmental soil DNA samples from rich and poor species habitats, collected from Um Nega Kuwait, using NGS-based PCR meta-barcode methods.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB13939"],"identifiers":[{"scheme":"BioProject","value":"PRJEB13939"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB13939","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb13939:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB13939","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb15084","name":"Treatment efficiencies of on-site hospital wastewater treatment plants and the quality of effluent discharged to a centralized municipal wastewater treatment plant","displayTitle":"Treatment efficiencies of on-site hospital wastewater treatment plants and the quality of effluent discharged to a centralized municipal wastewater treatment plant","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["WDRC KAUST"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/03/02; operational lifecycle is not asserted.","statusEvidenceDate":"2017-03-02","description":"This study aims to evaluate the removal efficiency of microbial contaminants from two hospitals on site WWTPs in Saudi Arabia. Hospital wastewaters often goes untreated in Saudi Arabia as in many devolving countries, were no specific regulations are imposed regarding hospital wastewaters treatment. The current guidelines are placed to ensure a safe treated wastewater quality, however, it do not detect pathogenic bacteria and emerging contaminants. Results from this study had detected pathogenic bacterial genera and antibiotic resistance bacteria in the sampled hospitals wastewater. And although the treatment process of one of the hospitals was able to meet current quality guidelines, the other hospital treatment process had failed to meet these guidelines and might be of concern. Furthermore, in order to estimate the risk on the public health and the impact of discharging the treated effluent to the public sewage, a comprehensive investigation is needed and suggestions for more detailed guidelines and monitoring.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB15084"],"identifiers":[{"scheme":"BioProject","value":"PRJEB15084"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB15084","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb15084:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB15084","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb1701","name":"Denovo sequencing of Silver pomfret (Pampus argenteus)","displayTitle":"Denovo sequencing of Silver pomfret (Pampus argenteus)","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research, Kuwait"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/01/20; operational lifecycle is not asserted.","statusEvidenceDate":"2015-01-20","description":"Silver pomfret (Pampus argenteus) is one of the most desired fish with a high economic value in Iran, Iraq and Kuwait. The study has been focused on whole-genome shotgun sequencing of Silver pomfret using Illumina Hiseq 2000 sequencing platform. A 100 bp paired-end run was performed with genomic DNA samples. The high-throughput sequence data obtained in this study would enable researchers to apply various tools to generate useful data for various type of genetic studies.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB1701"],"identifiers":[{"scheme":"BioProject","value":"PRJEB1701"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB1701","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb1701:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB1701","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb17503","name":"Genomic characterization of Multi-Drug Resistant Uropathogenic Escherichia coli isolates from Riyadh, Saudi Arabia","displayTitle":"Genomic characterization of Multi-Drug Resistant Uropathogenic Escherichia coli isolates from Riyadh, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["The Westmead Institute for Medical Research and Marie Bashir Institute for Infectious Diseases and Biosecurity"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/07/25; operational lifecycle is not asserted.","statusEvidenceDate":"2018-07-25","description":"Urinary tract infections associated with Escherichia coli are growing threat with the increased prevalence of multidrug resistant strains. In this study comparative genomics and phenotypic approaches were used to characterise ten community-acquired multidrug resistant UPEC isolates recovered from UTI patients in Riyadh between November 2014 and January 2015.  Both chromosomal and plasmid sequencing libraries were prepared and sequenced in Bioscience Core Laboratory at King Abdullah University of Science and Technology (KAUST).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB17503"],"identifiers":[{"scheme":"BioProject","value":"PRJEB17503"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB17503","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb17503:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB17503","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb17702","name":"Comparison of the gut microbiota of obese individuals from different geographic origins","displayTitle":"Comparison of the gut microbiota of obese individuals from different geographic origins","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/08/24; operational lifecycle is not asserted.","statusEvidenceDate":"2018-08-24","description":"Few studies have examined the interaction of human geography, microbial community structure and obesity. We tested obese adult volunteers from France, Saudi Arabia, French Polynesia and from a traditional population in the village of Trois-Sauts in French Guiana by sequencing the V3-V4 region. We also sequenced two homemade fermented cachiri beers  that are highly consumed by Amazonians. The gut microbiomes of the French and Saudis had significantly less richness and biodiversity than those of the Amazonians and Polynesians , whereas the Amazonians presented significantly stricter anaerobic genera than the Saudis, French and Polynesians .","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB17702"],"identifiers":[{"scheme":"BioProject","value":"PRJEB17702"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB17702","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb17702:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB17702","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb19968","name":"Characterization of Arabian fermented foods microbiota and interaction with gut microbiome of ‎Bedouin population","displayTitle":"Characterization of Arabian fermented foods microbiota and interaction with gut microbiome of ‎Bedouin population","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["King Fahd Medical Research Centre"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/01/07; operational lifecycle is not asserted.","statusEvidenceDate":"2021-01-07","description":"More than 2 million of Saudi population live a nomadic life and consume specific types of local ‎fermented foods and dairy products in routine diet. Microbial communities within such fermented ‎foods are often originating from environmental sources and the bacterial species in such type of ‎foods eventually reach the gut where they can interact with intestinal microbiota of the host. This ‎interaction is significant for human health, as local fermented food microbiota is considered ‎important source of probiotics and as well as of other environemtnal microorganisms that can ‎intervene in the gut microbiome composition and homeostasis. The interaction between the ‎microbiota of gut and intake food highlight the importance to investigate the microbiological ‎quality of fermented foods. In this study, we are proposing to analyze the microbiota of locally ‎fermented foods and their impact on the gut microbiome of Bedouin population of Saudi Arabia. ‎We aim to concomitantly analyse the samples via direct observation using Gram staining, electron ‎microscopy and by extensive culturomics analysis. High throughput MALDI-TOF mass ‎spectrometry system will be used for identification of isolated species. In addition, each sample ‎will be studied by 16S rRNA amplicon targeting V6 region pyrosequencing. Comperative analysis ‎will be perfomed to identifiy the impact and specific species richness in Bedouin gut's microbiome ‎due to the consumption of local fermented foods. We propose to apply these techniques on 10 ‎stool samples from Bedouin individuals compare with 7 samples of locally fermented foods ‎commonly use by those peoples.‎","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB19968"],"identifiers":[{"scheme":"BioProject","value":"PRJEB19968"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB19968","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb19968:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB19968","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb20133","name":"Hot stream metagenomic analysis","displayTitle":"Hot stream metagenomic analysis","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["KING ABDULAZIZ UNIVERSITY"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/01/11; operational lifecycle is not asserted.","statusEvidenceDate":"2019-01-11","description":"The examination of microbial diversity and distribution is one of the key concern in environmental microbiology. Identification of the microorganism exist in a particular environment is critical for understanding the function of organisms in that environment and the processes influencing the diversity of those organisms.  The hot springs are one of the most unique and diverse geothermal ecosystems on Earth, that host a collection of deeply-rooted and under studied prokaryotes. The combination of stringent chemical condition and extreme temperature encountered in geothermal system offers a vital opportunity for studying the diversity and function of indigenous microbiota. The unique microbial ecosystems of the hot springs from Saudi Arabia have never been studied in detail before. The purpose of this project is to examine the chemical and metabolic profile and to identify the bacterial and archaeal communities of the hot springs located at the southwestern region of the Saudi Arabia. This study will be conducted at five terrestrial hot springs for a period of two years. Culture-dependent and culture-independent metagenomic microbiological techniques will be used to investigate the microbial community composition and metabolic properties of the hot-springs microbial ecosystem.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJEB20133"],"identifiers":[{"scheme":"BioProject","value":"PRJEB20133"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB20133","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb20133:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB20133","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb22664","name":"Isolation of two echinocandin-resistant Candida tropicalis strains from endotracheal secretions of a patient, with no previous exposure to echinocandins, is described.","displayTitle":"Isolation of two echinocandin-resistant Candida tropicalis strains from endotracheal secretions of a patient, with no previous exposure to echinocandins, is described.","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Multiple records","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/11/29; operational lifecycle is not asserted.","statusEvidenceDate":"2017-11-29","description":"Isolation of two echinocandin-resistant Candida tropicalis strains from endotracheal secretions of a patient, with no previous exposure to echinocandins, is described. Both strains exhibited resistance to caspofungin by Etest and broth microdilution test, showed S645P mutation within the hot-spot(HS)-1 region of FKS1 and belonged to a unique multilocus sequence type. Other C. tropicalis isolates collected from the same intensive care unit patients within 60 day-period were susceptible to caspofungin and contained wild-type FKS1 sequences.","scaleSummary":"3 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB22664","PRJEB22666","PRJEB22669"],"identifiers":[{"scheme":"BioProject","value":"PRJEB22664"},{"scheme":"BioProject","value":"PRJEB22666"},{"scheme":"BioProject","value":"PRJEB22669"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB22664","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb22664:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB22664","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb22664:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB22666","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb22664:s03","type":"additional record source","rank":3,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB22669","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"ncbi-prjeb23981","name":"A case of cutaneous phaeohyphomycosis caused by Amesia atrobrunnea (= Chaetomium atrobrunneum) in an apparently immunocompetent patient is described.","displayTitle":"A case of cutaneous phaeohyphomycosis caused by Amesia atrobrunnea (= Chaetomium atrobrunneum) in an apparently immunocompetent patient is described.","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Multiple records","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/12/21; operational lifecycle is not asserted.","statusEvidenceDate":"2017-12-21","description":"A case of cutaneous phaeohyphomycosis caused by Amesia atrobrunnea (= Chaetomium atrobrunneum) in an apparently immunocompetent patient is described. The identity of A. atrobrunnea was established by typical morphological characteristics and by sequencing of internally transcribed spacer (ITS) region of rDNA and partial sequencing of β-tubulin gene fragment. This is the first report documenting pathogenic potential of this species causing locally invasive infection.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB23981","PRJEB23982"],"identifiers":[{"scheme":"BioProject","value":"PRJEB23981"},{"scheme":"BioProject","value":"PRJEB23982"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB23981","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb23981:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB23981","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb23981:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB23982","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjeb24321","name":"Metagenomic Analysis of soil microbial community of the western high land","displayTitle":"Metagenomic Analysis of soil microbial community of the western high land","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["KING ABDULAZIZ UNIVERSITY"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/01/05; operational lifecycle is not asserted.","statusEvidenceDate":"2022-01-05","description":"In this study soil was collected from the western high land of Saudi Arabia. The samples were analyzed using next generation sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB24321"],"identifiers":[{"scheme":"BioProject","value":"PRJEB24321"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB24321","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb24321:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB24321","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb24948","name":"Allergic fungal sinusitis by Exserohilum rostratum and literature review","displayTitle":"Allergic fungal sinusitis by Exserohilum rostratum and literature review","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/02/21; operational lifecycle is not asserted.","statusEvidenceDate":"2018-02-21","description":"A case of allergic fungal sinusitis caused by Exserohilum rostratum, proven by culture and histopathology of the biopsy material, has been described. The identity of the isolate was confirmed by sequencing of ITS region and D1/D2 domains of rDNA. To the best of our knowledge this is the first report of allergic E. rostratum sinusitis from Kuwait and Arabian Peninsula. Ten previously described cases of AFS have been reviewed. The report highlights the emerging importance of E. rostratum as a human pathogen in this region and role of molecular methods in its accurate identification.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB24948"],"identifiers":[{"scheme":"BioProject","value":"PRJEB24948"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB24948","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb24948:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB24948","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb25918","name":"Azole-resistant C. blankii as a cause of fungemia","displayTitle":"Azole-resistant C. blankii as a cause of fungemia","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/04/09; operational lifecycle is not asserted.","statusEvidenceDate":"2018-04-09","description":"A case of candidemia by Candida blankii in a preterm very low birth-weight neonate is described. The yeast was repeatedly isolated from bloodstream. The isolates formed cream-colored colonies with smooth surface and entire margins. Microscopic examination of wet mounts revealed ovoid budding yeast cells with pseudohyphae. The isolates showed reduced susceptibility (MIC = 12-16 µg/ml) to fluconazole by Etest. Species-specific identification was achieved by PCR-sequencing of rDNA. The presence of C. blankii DNA was also detected directly in a blood sample. Despite combination antifungal treatment with amphotericin B and caspofungin for 5 days, the patient expired.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB25918"],"identifiers":[{"scheme":"BioProject","value":"PRJEB25918"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB25918","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb25918:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB25918","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb26468","name":"Marine microorganisms","displayTitle":"Marine microorganisms","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Biotechnology Center, Ministry of Municipality and Environment,Qatar"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/06/29; operational lifecycle is not asserted.","statusEvidenceDate":"2018-06-29","description":"The principal objective of the proposed project is to establish a comprehensive understanding of microbial biodiversity (bacteria, archaea, fungi and protists) in Qatari coastal waters and to detect the most ecologically relevant microbial taxa using massive parallel rDNA/RNA and metagenome sequencing integrated with environmental and phenotypic organismic metadata and GIS mapping. We will combine the genetic and contextual data to investigate ecological and evolutionary questions in marine microbial diversity in Qatar: How many microbes, who, where, when, and why? We will correlate change in marine microbial diversity with environmental conditions and anthropogenic pressures (pollution, nutrient input). We will assess the ecosystem services of marine microbial diversity and identify its relative role in terms of global ecology and human food, health, and biotechnology. This project will bring together the expertise in state-of-the art high-throughput molecular biology methods, computational biology, microbial diversity and physiology, cultivation and genomics to investigate and make use of the coastal microbial diversity in the Arabian Gulf surrounding Qatar.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB26468"],"identifiers":[{"scheme":"BioProject","value":"PRJEB26468"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB26468","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb26468:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB26468","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb26553","name":"ERG6 and ERG2 are major targets conferring reduced susceptibility to amphotericin B in clinical Candida glabrata isolates in Kuwait","displayTitle":"ERG6 and ERG2 are major targets conferring reduced susceptibility to amphotericin B in clinical Candida glabrata isolates in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/05/03; operational lifecycle is not asserted.","statusEvidenceDate":"2018-05-03","description":"Objectives: Candida glabrata is intrinsically less susceptible to azoles and resistance to echinocandins and amphotericin B has also been detected. Molecular mechanisms of reduced susceptibility (RS) to amphotericin B (AMB) were investigated in C. glabrata strains in Kuwait by sequence analyses of genes involved in ergosterol biosynthesis. Methods: Eight RS-AMB and 5 AMB-susceptible C. glabrata isolates were used. Antifungal susceptibility testing was done by Etest and by reference broth microdilution. PCR-sequencing of three (ERG2, ERG6 and ERG11) genes was performed by using gene-specific primers. Total cell sterol content was analyzed by gas chromatography-mass spectrometry. Phylogenetic relationship among the isolates was investigated by multilocus sequence typing. Results: AMB-susceptible isolates contained only synonymous mutations in ERG2, ERG6 or ERG11 and total sterol content of 1 isolate was similar to reference strain. A nonsynonymous (AGA48AAA, R48K) ERG6 mutation was found in both RS-AMB and AMB-susceptible isolates. Four RS-AMB isolates contained novel nonsense mutations at Trp286/Tyr192/Leu341 and two isolates contained nonsynonymous (V126F or C198F) mutation in ERG6 and their sterol content were consistent with ERG6 deficiency. Two other RS-AMB isolates contained novel nonsynonymous (G119S or G122S) ERG2 mutation and their sterol content were consistent with ERG2 deficiency. Isolate Kw861/13 also contained Y141H + L381M mutations while 7 RS-AMB isolates contained only synonymous mutations in ERG11. All isolates with ERG6/ERG2/ERG11 mutations were genotypically distinct strains. Conclusions: Our data show that ERG6 and ERG2 are major targets conferring RS-AMB in clinical C. glabrata isolates in Kuwait.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB26553"],"identifiers":[{"scheme":"BioProject","value":"PRJEB26553"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB26553","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb26553:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB26553","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb26988","name":"ESBL-E. coli KSA","displayTitle":"ESBL-E. coli KSA","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["KING ABDULAZIZ UNIVERSITY"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/07/27; operational lifecycle is not asserted.","statusEvidenceDate":"2018-07-27","description":"Whole genome sequence analysis of clinical isolates of E. coli from Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB26988"],"identifiers":[{"scheme":"BioProject","value":"PRJEB26988"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB26988","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb26988:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB26988","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb26989","name":"Ascotricha chartarum infections in Kuwait","displayTitle":"Ascotricha chartarum infections in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/05/30; operational lifecycle is not asserted.","statusEvidenceDate":"2018-05-30","description":"We describe the isolation and characterization of Ascotricha chartarum from broncho-alveolar lavage samples of two patients who had underlying pulmonary infection/condition of unknown etiology. The identity of the isolates was established by typical phenotypic characteristics and by sequencing of the internal transcribed spacer (ITS) region and D1/D2 domains of rDNA and β-tubulin gene fragment. The report highlights that A. chartarum could be a new respiratory pathogen even though its etiological role in the disease process could not be established unequivocally as tissue biopsies were not available for culture and/or histopathological examination. Molecular methods are needed for accurate identification of A. chartarum due to its phenotypic similarities with Chaetomium spp. and other Chaetomium-like fungi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB26989"],"identifiers":[{"scheme":"BioProject","value":"PRJEB26989"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB26989","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb26989:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB26989","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb27228","name":"Primary progressive and fatal fungemia by Lodderomyces elongisporus in an apparently immunocompetent elderly female in Kuwait","displayTitle":"Primary progressive and fatal fungemia by Lodderomyces elongisporus in an apparently immunocompetent elderly female in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/06/12; operational lifecycle is not asserted.","statusEvidenceDate":"2018-06-12","description":"Isolation and characterization of Lodderomyces elongisporus from bloodstream of a female patient with peripheral vascular disease is described. The patient apparently had no known risk factor for invasive fungal infection when the diagnosis was made. The yeast isolate was identified by sequencing of ITS region of rDNA. L. elongisporus is a rare yeast pathogen and can be misidentified as Candida parapsilosis by Vitek yeast identification system, thus underscoring the need of application of molecular methods for its accurate identification. Despite prompt initiation of antifungal treatment with caspofungin, the patient died within three days of onset of fungemia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB27228"],"identifiers":[{"scheme":"BioProject","value":"PRJEB27228"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB27228","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb27228:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB27228","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb28624","name":"Adventitious sporulation in F. petroliphilum","displayTitle":"Adventitious sporulation in F. petroliphilum","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/11/13; operational lifecycle is not asserted.","statusEvidenceDate":"2018-11-13","description":"Some strains of Fusarium species are capable of forming yeast-like synanamorphs in culture. These yeast-like structures can also be formed in infected tissues through a process described as adventitious sporulation. Fusarium petroliphilum is a recently described species in the Fusarium solani species complex.  Here, we report formation of these yeast-like reproductive structures in culture as well as in infected nail tissue obtained from a case of onychomycosis caused by F. petroliphilum. The isolate was resistant to azoles and echinocandins. These findings may have implications in identification, diagnosis and pathogenesis of infections caused by this species.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB28624"],"identifiers":[{"scheme":"BioProject","value":"PRJEB28624"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB28624","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb28624:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB28624","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb28773","name":"Candida lusitaniae as a cause of fungemia in Kuwait: epidemiology, antifungal drug susceptibility and outcome of bloodstream infections in neonates","displayTitle":"Candida lusitaniae as a cause of fungemia in Kuwait: epidemiology, antifungal drug susceptibility and outcome of bloodstream infections in neonates","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/11/26; operational lifecycle is not asserted.","statusEvidenceDate":"2018-11-26","description":"Candida lusitaniae is an opportunistic yeast pathogen in certain high-risk patient populations/cohorts. The species exhibits an unusual antifungal susceptibility profile with tendency to acquire rapid resistance. Here, we describe prevalence of C. lusitaniae in clinical specimens in Kuwait, its antifungal susceptibility profile and role in neonatal fungemia. Clinical C. lusitaniae isolates recovered from diverse specimens during 2011 to 2017 were retrospectively analyzed. All isolates were identified by germ tube test, growth on CHROMagar Candida and by Vitek 2 yeast identification system. A simple species-specific PCR assay was developed and results were confirmed by PCR-sequencing of ITS region of rDNA. Antifungal susceptibility was determined by Etest. Minimum inhibitory concentrations (MICs) were recorded after 24 h incubation at 35oC. Of 7068 yeast isolates, 134 (1.89%) were identified as C. lusitaniae including 25 (2.52%) among 990 bloodstream isolates. Species-specific PCR and PCR-sequencing of rDNA confirmed identification. Of 11 cases of neonatal candidemia, 9 occurred in NICU of Hospital A and are described here. Eight of 9 neonates received liposomal amphotericin B, which was followed by fluconazole in 7 and caspofungin in 2 cases as salvage therapy. Three of 8 (37.5%) patients died. No isolate exhibited reduced susceptibility to amphotericin B, fluconazole, voriconazole, caspopfungin, micafungin and anidulafungin. The MIC + geometric mean values for amphotericin B, fluconazole, voriconazole, and caspofungin were as follows: 0.072 ± 0.037 µg/ml, 2.32 ± 0.49 µg/ml, 0.09 ± 0.01 µg/ml and 0.16 ± 0.08 µg/ml, respectively. Only two isolates exhibited fluconazole MICs of 16 µg/ml and 24 µg/ml.This study describes the prevalence and antifungal susceptibility profile of clinical C. lusitaniae isolates in Kuwait. No isolate showed reduced susceptibility to amphotericin B. The study highlights the emerging role of C. lusitaniae as a healthcare-associated pathogen capable of causing fungemia in preterm neonates and causing significant mortality.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB28773"],"identifiers":[{"scheme":"BioProject","value":"PRJEB28773"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB28773","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb28773:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB28773","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb29082","name":"Rapid detection of Extra-intestinal Pathogenic Escherichia coli Multi-locus Sequence Type 127 using a specific PCR","displayTitle":"Rapid detection of Extra-intestinal Pathogenic Escherichia coli Multi-locus Sequence Type 127 using a specific PCR","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["UNIVERSITY OF BIRMINGHAM"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/10/11; operational lifecycle is not asserted.","statusEvidenceDate":"2018-10-11","description":"Members of the ST127 uropathogenic E. coli (UPEC) clone are highly virulent in insect infection models, but strains of this lineage are reported in relatively low numbers in many studies. ST127 strains are also usually widely susceptible to antibiotics and, consequently, their true prevalence may be under-recognised, as they will be eradicated during empiric therapy. A genuine concern is the possibility that members of this lineage will acquire resistance, leading to a more serious threat given their virulence. The aim of this study was to design and validate a PCR assay specific to ST127. Genomic sequences obtained from various UPEC isolates from the leading clones were used in comparative genomics to allow identification of highly discriminative sequences specific to E. coli ST127. The fliC (flagellin) and a putative upaG (Autotransporter adhesin) genes were identified as meeting our criteria and were used to develop a multiplex PCR assay. A total of 143 E. coli UPEC isolates representing 99 different MLST clones from three locations (North West and south west England and Riyadh, Saudi Arabia) were used to validate the PCR assay. The three primer pair multiplex PCR readily identified all 29 E. coli ST127 isolates, but equally importantly, produced no false positives with any of the other 98 ST’s tested. We report the design and validation of a specific multiplex PCR for the rapid and reliable identification of ST127, which can be used for enhanced surveillance for this high-risk clone.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB29082"],"identifiers":[{"scheme":"BioProject","value":"PRJEB29082"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB29082","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb29082:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB29082","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb29664","name":"Diversity of nontuberculous mycobacterial infections in Kuwait","displayTitle":"Diversity of nontuberculous mycobacterial infections in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/11/15; operational lifecycle is not asserted.","statusEvidenceDate":"2018-11-15","description":"Objective: Non-tuberculous mycobacteria (NTM) often cause disease that is clinically indistinguishable from tuberculosis. Specific identification is important since treatment varies according to Mycobacterium species causing infection. This study used multiplex PCR (mPCR) assay for rapid differentiation of mycobacterial growth indicator tube 960 system (MGIT) cultures as Mycobacterium tuberculosis (MTB) or NTM. Further identification was achieved by INNO LiPA Mycobacteria v2 assay (LiPA) and/or PCR-sequencing of 16S-23S internally transcribed spacer (ITS) region of rDNA. Materials and Methods: DNA was extracted from MGIT cultures (n=1033) and mPCR was performed to differentiate MTB from NTM. LiPA was performed and results were interpreted according to kit instructions. ITS region was amplified and sequenced by using panmycobacterial primers. Results: mPCR identified 979 isolates as MTB, 53 isolates as NTM and one isolate as mixed culture. LiPA and/or PCR-sequencing confirmed 112 of 979 selected isolates as MTB. Mixed culture contained M. tuberculosis and M. fortuitum. LiPA yielded 12 patterns and identified 10 species/species complexes among 47 NTM, M. kansasii + M. scrofulaceum in mixed culture and five isolates only at genus level. PCR-sequencing yielded more accurate identification with 15 isolates correctly identified at species/subspecies level. Conclusions: mPCR rapidly differentiated MTB from NTM. LiPA correctly identified Mycobacterium species in 44 of 52 NTM isolates and two mixed cultures. PCR-sequencing yielded more accurate identification for 15 NTM important for proper patient management. Rapid differentiation as MTB or NTM by mPCR followed by species-specific NTM identification by LiPA/PCR-sequencing is most suitable for proper management of mycobacterial infections in Kuwait.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB29664"],"identifiers":[{"scheme":"BioProject","value":"PRJEB29664"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB29664","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb29664:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB29664","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb30599","name":"First report of KPC-2-producing Klebsiella quasipneumoniae in Saudi Arabia by whole-genome sequencing","displayTitle":"First report of KPC-2-producing Klebsiella quasipneumoniae in Saudi Arabia by whole-genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/03/05; operational lifecycle is not asserted.","statusEvidenceDate":"2019-03-05","description":"In this study, we report blaKPC-2 identification from a K. quasipneumoniae clinical isolate in Saudi Arabia using whole genome sequencing (WGS).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB30599"],"identifiers":[{"scheme":"BioProject","value":"PRJEB30599"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB30599","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb30599:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB30599","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb30659","name":"Fungemia due to Magnusiomyces capitatus","displayTitle":"Fungemia due to Magnusiomyces capitatus","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/01/11; operational lifecycle is not asserted.","statusEvidenceDate":"2019-01-11","description":"Two cases of fungemia due to Magnusiomyces  capitatus  in non-leukemic patients are presented. Both patients died before definite diagnosis was made. Direct examination of their blood cultures using Gram stain revealed characteristic morphology suggestive of arthroconidial yeast. PCR sequencing of the internally transcribed spacer (ITS) region of rDNA identified the isolates as Magnusiomyces  capitatus.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB30659"],"identifiers":[{"scheme":"BioProject","value":"PRJEB30659"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB30659","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb30659:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB30659","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb30883","name":"Diagnosis of Nontuberculous mycobacteria (NTM) infection using shotgun metagenomic sequencing","displayTitle":"Diagnosis of Nontuberculous mycobacteria (NTM) infection using shotgun metagenomic sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/12/08; operational lifecycle is not asserted.","statusEvidenceDate":"2019-12-08","description":"Next-generation sequencing (NGS) and bioinformatics analyses were applied to diagnose Nontuberculous mycobacteria (NTM) infection in a patient admitted to a tertiary hospital in Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB30883"],"identifiers":[{"scheme":"BioProject","value":"PRJEB30883"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB30883","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb30883:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB30883","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb31670","name":"Isolation of Toxicocladosporium aquimarinum sp. nov. and Toxicocladosporium qatarense sp. nov. from marine waters of the Arabian Gulf surrounding Qatar","displayTitle":"Isolation of Toxicocladosporium aquimarinum sp. nov. and Toxicocladosporium qatarense sp. nov. from marine waters of the Arabian Gulf surrounding Qatar","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Westerdijk Fungal Biodiversity Institute"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/05/15; operational lifecycle is not asserted.","statusEvidenceDate":"2019-05-15","description":"The Arabian Gulf surrounding Qatar is distinct from other marine ecosystems due to its high salinity (39-57 PSU) and extreme water temperature fluctuations (18-39°C). Furthermore, in the last decade, Qatar has been witnessing an industrial boom as well as extensive infrastructure construction activities. Marine microorganism, including fungi remain largely unexplored in the Arabian Gulf ,. During a 3-year study, we investigated the diversity of marine fungi in coastal waters around Qatar. Water samples were collected during two 2 seasons in 2 years from 14 different sites along the coast of the Arabian Gulf surrounding Qatar. Fungal isolates were identified by sequence analyses of the internal transcribed spacers (ITS1/ITS2) and D1/D2 domains of the large subunit (LSU) of the ribosomal DNA (rDNA). As a result, two new Toxicocladosporium species were isolated from the Qatari marine.. Molecular and phylogenetic analyses of DNA sequences of five loci, namely the internal transcribed spacer 1 and 2 regions and the D1/D2 domains of the large subunit rDNA; the actin, RNA polymerase second largest subunit and beta-tubuline genes, were used to confirm the identity of the novel species for which we propose the names Toxicocladosporium aquamarinum sp. nov. and Toxicocladosporium halotolerans sp. nov. are proposed.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB31670"],"identifiers":[{"scheme":"BioProject","value":"PRJEB31670"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB31670","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb31670:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB31670","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb31699","name":"Bacterial and fungal communities in biological soil crusts from Oman","displayTitle":"Bacterial and fungal communities in biological soil crusts from Oman","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["German Federation for Biological Data"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/05/03; operational lifecycle is not asserted.","statusEvidenceDate":"2019-05-03","description":"Biological soil crusts (biocrusts) occur within drylands throughout the world, covering ~12% of the global terrestrial soil surface. Their occurrence in the deserts of the Arabian Peninsula has rarely been reported and their spatial distribution, diversity, and microbial composition remained largely unexplored. We investigated biocrusts at six different locations in the coastal and central deserts of Oman. The biocrust types were characterized, and the bacterial and fungal community compositions of biocrusts and uncrusted soils were analysed by amplicon sequencing. For each sample two different libraries were prepared: one for the V3V4 hypervariable region of the 16S rRNA gene (bacteria), and the other for the internal transcribed spacer 1 (ITS1; fungi). Sequences were processed in R using dada2. The code for sequence processing as well as statistical analysis, final OTU and taxonomy tables were archived on PANGAEA alongside the environmental information.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB31699"],"identifiers":[{"scheme":"BioProject","value":"PRJEB31699"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB31699","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb31699:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB31699","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb32117","name":"Genome diversity and signatures of selection for production and performance traits in dromedary camels","displayTitle":"Genome diversity and signatures of selection for production and performance traits in dromedary camels","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/06/23; operational lifecycle is not asserted.","statusEvidenceDate":"2019-06-23","description":"This study is aiming to assess the genome diversity of dromedary camel populations from Sudan, and screen for candidate regions with signatures of selection associated with their production and performance traits. Genotyping-by-sequencing (GBS) data of 44 camel samples from five dromedary populations were used in this study. These populations are divided into three packing populations mainly used for milk production and two racing populations. All the GBS data are generated by Dr. Hassan Hussein Musa from  the Department of Medical Microbiology, Faculty of Medical Laboratory Sciences, University of Khartoum, Sudan.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB32117"],"identifiers":[{"scheme":"BioProject","value":"PRJEB32117"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32117","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb32117:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32117","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb32162","name":"Mycobacterium riyadhense clinical isolates from Saudi Arabia provides insights into ancestry and adaptive evolution in tuberculosis","displayTitle":"Mycobacterium riyadhense clinical isolates from Saudi Arabia provides insights into ancestry and adaptive evolution in tuberculosis","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/11/26; operational lifecycle is not asserted.","statusEvidenceDate":"2019-11-26","description":"Mycobacterium riyadhense was first discovered in 2009 in Riyadh, Saudi Arabia. It causes tuberculosis (TB)-like symptoms and was originally misdiagnosed as such but subsequently classified as a novel species of Non-Tuberculous Mycobacteria (NTM). In order to define its phylogenetic relationship to other Mycobacteria species including members of the M. tuberculosis complex (MTBC), the genomes of eight clinical samples of M. riyadhense were sequenced and analyzed. We show that M. riyadhense shares a large number of conserved orthologs including the presence of 49 toxin/antitoxin pairs and a similar ESAT-6/CFP-10 secretions systems (ESX-1) as members of MTBC. A phylogenetic tree based on conserved marker genes places M. riyadhense closer to the MTBC than to other known environmental mycobacterial relatives such as M. kansasii and M. marinum. Using a K-mer-based comparative genomic approach, we have developed a PCR-based diagnostic marker for M. riyadhense suitable for rapid identification in a clinical setting. We conclude that M. riyadhense is the closest known environmental relative of M. tuberculosis before reductive genome evolution and host-adaptation. Our study suggests M. riyadhense is a good experimental model organism to study the tuberculosis pathogens belonging to the MTBC.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJEB32162"],"identifiers":[{"scheme":"BioProject","value":"PRJEB32162"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32162","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb32162:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32162","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb32173","name":"Evaluating groundwater for changes in chemical and microbial profiles after recharging with treated wastewater","displayTitle":"Evaluating groundwater for changes in chemical and microbial profiles after recharging with treated wastewater","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["WDRC KAUST"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/10/21; operational lifecycle is not asserted.","statusEvidenceDate":"2019-10-21","description":"Aquifer recharge with effluent wastewater (EWW) is a strategy that Saudi Arabia will implement to restore the groundwater supply. Hence monitoring the quality of the groundwater is essential because majority of these recharged waters will be used for food production. The aim of this study is to provide a baseline knowledge on the groundwater quality in Wadi Fatimah during recharge with EWW from the chemical and microbial perspective. We found that recharging aquifer with EWW did not affect the quality of the groundwater during 2016.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB32173"],"identifiers":[{"scheme":"BioProject","value":"PRJEB32173"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32173","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb32173:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32173","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb32337","name":"TGFβ Induced SMAD4 Dependent Apoptosis Proceeded by EMT in CRC​","displayTitle":"TGFβ Induced SMAD4 Dependent Apoptosis Proceeded by EMT in CRC​","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["KING FAISAL SPECIALIST HOSPITAL AND RESEARCH CENTRE"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/05/15; operational lifecycle is not asserted.","statusEvidenceDate":"2019-05-15","description":"Colorectal cancer (CRC) is one of the leading cause of cancer-related deaths Worldwide. In Saudi Arabia, CRC is more aggressive and presents at younger age, warranting new treatment strategies. Role of TGFβ/Smad4 signaling pathway in initiation and progression of CRC is well documented. Current study examined the role of TGFβ/Smad4 signaling pathway in a large cohort of Saudi CRC, followed by in vitro analysis to dissect the dual role of TGFβ on inducing epithelial to mesenchymal transition (EMT) and apoptosis. Our study demonstrated high frequency of Smad4 alterations with low expression of Smad4 protein identifying a sub-group of aggressive CRC to be an independent marker for poor prognosis. Functional studies using CRC cells show that TGFβ induces Smad4 dependent EMT followed by apoptosis. Induction of mesenchymal transcriptional factors, Snail1 and Zeb1 was essential for TGFβ-induced apoptosis. Our results indicate that KLF5 acts as an oncogene in CRC cells regardless of Smad4 expression and inhibition of KLF5 is requisite for TGFβ-induced apoptosis. Furthermore, TGFβ/Smad4 signal inhibits the transcription of KLF5 that in turn switches Sox4 from tumor promoter to suppressor. A high incidence of Smad4 alterations were found in the Saudi CRC patients. Functional study results indicate that TGFβ induces Smad4 dependent EMT followed by apoptosis in CRC cells.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB32337"],"identifiers":[{"scheme":"BioProject","value":"PRJEB32337"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32337","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb32337:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32337","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb32440","name":"Genome sequencing of Acinterobacter baumannii genomes from Saudi Arabia.","displayTitle":"Genome sequencing of Acinterobacter baumannii genomes from Saudi Arabia.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Not stated","leadOrganizations":["KING ABDULAZIZ UNIVERSITY"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/07/06; operational lifecycle is not asserted.","statusEvidenceDate":"2019-07-06","description":"In this study, we performed genome sequences analysis of A. baumannii isolates from Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB32440"],"identifiers":[{"scheme":"BioProject","value":"PRJEB32440"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32440","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb32440:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32440","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb32538","name":"Persistence and spread of Candida auris in various hospitals across Kuwait and their susceptibility to antifungal drugs","displayTitle":"Persistence and spread of Candida auris in various hospitals across Kuwait and their susceptibility to antifungal drugs","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/05/15; operational lifecycle is not asserted.","statusEvidenceDate":"2019-05-15","description":"Background: Candida auris has recently attracted worldwide attention because of its intrinsic resistance to multiple antifungal agents and proclivity of nosocomial transmission despite normal decontamination procedures. Here, we describe isolation frequency and spread of C. auris among patients in various hospitals in Kuwait during 2014-2018. Susceptibility to antifungal drugs and molecular basis of resistance to fluconazole, voriconazole and micafungin was also studied.Methods: A total of 314 C. auris isolates obtained from 126 patients in eight hospitals were studied. All isolates were identified by PCR amplification and/or PCR-sequencing of rDNA. Antifungal susceptibility was determined by Etest. Fluconazole resistance was studied by PCR-sequencing of ERG11 gene fragment while resistance to micafungin was studied by PCR-sequencing of hotspot 1 region of FKS1 gene.Results: Of 314 C. auris isolates, 58 (18.4%) came from blood specimens of 43 patients including 42 strains isolated from 30 patients in 2018. Most non-blood isolates (n=256) were cultured from urine (n=124) and respiratory specimens (n=98). The isolation frequency of bloodstream C. auris strains was statistically higher (42 of 307, 13.7%) in 2018 as compared to 2014-2017 (16 of 964, 1.7%) (P=0.000). Similarly, isolation frequency of C. auris was statistically higher (P=0.000) from non-blood specimens in 2018 (97 of 722, 13.4%) as compared to 2014-2017 (159 of 2847, 6.4%). Of total C. auris isolates during the two period, more bloodstream isolates (42 of 139) were cultured in 2018 than during 2014-2017 (16 of 175) (P=0.000). Resistance to amphotericin B, fluconazole, voriconazole and micafungin was detected in 27.1%, 100%, 41.1% and 1.7% isolates, respectively. No isolate was resistant to flucytosine. Fluconazole-resistant isolates contained either Y132F or K143R mutation in ERG11. Isolates with K143R mutation were additionally resistant to voriconazole. Micafungin-resistant isolates contained S639F mutation in hotspot 1 region of FKS1. Conclusions: Our study highlights continued spread of C. auris in major hospitals across Kuwait and its increasing role as a bloodstream pathogen in 2018 warranting continuous surveillance. Cross-resistance to voriconazole was seen only in isolates with K143R mutation in ERG11 while micafungin-resistant isolates harbored S639F mutation in hotspot 1 of FKS1.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Genome"],"accessionIds":["PRJEB32538"],"identifiers":[{"scheme":"BioProject","value":"PRJEB32538"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32538","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb32538:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32538","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb32809","name":"Molecular Biodiversity of Iranian Persian Gulf Sponges","displayTitle":"Molecular Biodiversity of Iranian Persian Gulf Sponges","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["LUDWIG-MAXIMILIANS-UNIVERSITAET MUENCHEN"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/10/02; operational lifecycle is not asserted.","statusEvidenceDate":"2019-10-02","description":"Despite their importance, our knowledge of the biodiversity and phylogeography of sponges in the Persian Gulf and adjacent waters is largely unexplored. Such knowledge, however, is necessary to better understand those patterns and processes that generated and maintained sponge diversity in this largely separated marginal sea, and to create a foundation for future exploration of the marine natural resources in this area. Recently, several expeditions resulted in the so far largest sponge collection of the Persian Gulf and Gulf of Oman, which now led towards the most comprehensive molecular taxonomic inventory of sponges in this region to date. We analyzed a total of 143 samples molecularly and identified 52 operational taxonomic units (OTUs) based on 28S and CO1. Additional molecular comparison with the Red Sea sponge fauna indicate a strong differentiation and high levels endemism between the Persian Gulf and the Red Sea respectively, supporting earlier estimations for other marine taxa.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB32809"],"identifiers":[{"scheme":"BioProject","value":"PRJEB32809"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32809","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb32809:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32809","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb32943","name":"Cross-transmission of MDR-TB in Kuwait","displayTitle":"Cross-transmission of MDR-TB in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/06/12; operational lifecycle is not asserted.","statusEvidenceDate":"2019-06-12","description":"Background: Increasing incidence of multidrug-resistant Mycobacterium tuberculosis infections are hampering global TB control efforts. Kuwait is a low tuberculosis incidence country and ~1% of M. tuberculosis strains are resistant to rifampicin and isoniazid (MDR-TB). This study detected mutations in seven genes predicting resistance to rifampicin, isoniazid, ethambutol, pyrazinamide and streptomycin in MDR-TB strains. Sequence data were combined with spoligotypes for detecting local transmission of MDR-TB in Kuwait.Methods: Ninety-three MDR-TB strains isolated from 12 Kuwaiti and 81 expatriate patients and 50 pansusceptible strains were used. Phenotypic drug susceptibility was determined by MGIT 460TB/960 system. Mutations conferring resistance to rifampicin, isoniazid, ethambutol, streptomycin and pyrazinamide were detected by Genotype MTBDRplus assay and/or PCR-sequencing of three rpoB regions, katG codon 315 (katG315) + inhA regulatory region, three embB regions, rpsL + rrs-500-900 regions and pncA. Phylogenetic tree was constructed from concatenated sequences by MEGA7 software. Spoligotyping kit was used, spoligotypes were identified by SITVIT2 and phylogenetic tree was constructed by using MIRU-VNTRplus software. Additional PCR-sequencing of gidB and rpsA was performed for cluster isolates.Results: Pansusceptible isolates contained wild-type sequences. Mutations in rpoB and katG + inhA were detected in 93/93 and 91/93 MDR-TB strains, respectively. Mutations were also detected in ethambutol-resistant, streptomycin-resistant and pyrazinamide-resistant MDR-TB isolates in embB, rpsL + rrs and pncA, respectively. Phylogenetic analysis of concatenated sequences showed unique patterns for 51 isolates while 42 isolates grouped in 16 clusters. Spoligotyping identified 35 patterns with 18 isolates exhibiting unique patterns and 75 isolates grouped in 17 patterns. Beijing genotype was most common (32/93) and 11 isolates showed nine orphan patterns. Interestingly, 18 isolates clustered by both methods and were isolated from TB patients typically within a span of <2 years. Eight of nine clusters were confirmed completely or nearly completely by additional gidB and rpsA sequence data.Conclusions: Our study provides first insight into molecular epidemiology of MDR-TB in Kuwait and identified seven potential clusters of local transmission of MDR-TB involving 2-6 subjects which had escaped detection by routine surveillance studies. Prospective detection of resistance-conferring mutations can identify possible cases of local transmission of MDR-TB in low MDR-TB settings.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB32943"],"identifiers":[{"scheme":"BioProject","value":"PRJEB32943"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32943","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb32943:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32943","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb33320","name":"Discover new allele of HLA C*04 in Kuwait","displayTitle":"Discover new allele of HLA C*04 in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Tzu Chi Stem Cell Center"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/09/20; operational lifecycle is not asserted.","statusEvidenceDate":"2019-09-20","description":"Discover new allele of HLA C*04 in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB33320"],"identifiers":[{"scheme":"BioProject","value":"PRJEB33320"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33320","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb33320:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33320","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb33543","name":"Discover new allele of HLA C*16 in Kuwait","displayTitle":"Discover new allele of HLA C*16 in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Tzu Chi Stem Cell Center"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/09/20; operational lifecycle is not asserted.","statusEvidenceDate":"2019-09-20","description":"Discover new allele of HLA C*16 in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB33543"],"identifiers":[{"scheme":"BioProject","value":"PRJEB33543"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33543","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb33543:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33543","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb33580","name":"Discover new allele of HLA DQB1*04 in Kuwait","displayTitle":"Discover new allele of HLA DQB1*04 in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Tzu Chi Stem Cell Center"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/09/20; operational lifecycle is not asserted.","statusEvidenceDate":"2019-09-20","description":"Discover new allele of HLA DQB1*04 in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB33580"],"identifiers":[{"scheme":"BioProject","value":"PRJEB33580"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33580","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb33580:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33580","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb33715","name":"The microbiome of four soil samples from arid and semi-arid region of Saudi Arabia.","displayTitle":"The microbiome of four soil samples from arid and semi-arid region of Saudi Arabia.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Aligarh Muslim University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/04/18; operational lifecycle is not asserted.","statusEvidenceDate":"2020-04-18","description":"Saudi desert is World’s fifth largest desert stretching from Yemen to Persian Gulf and Iraq.  Saudi Arabia the biggest importer of food and agricultural products is aspiring to be an oil independent economy. To improve the agricultural capacity, it is both important to understand the composition of the desert soil microbial communities both in agricultural and not agricultural desert soils. With this aim soil samples from a relatively cold semi-arid region of Abha known for agriculture and from hot arid regions of Hafr Al-Batin and Muzahmiyah were collected and studied for their microbial communities using Illumina sequencing approach. Composition of microbial communities varied remarkably from one place to another and the highest diversity was found in rhizospheric soil from Muzahmiyah followed by ABHA. Firmicutes, Proteobacteria and Actinobacteria were three main phyla detected in all the tested soil. Unlike previous reports Bacteroidetes was not a major constituent and population of Firmicutes was quite high (19-50% of the total bacteria). While, soils from agricultural region of Abha were significantly different from other samples in containing only 1% Firmicutes and three to six times higher population of Actinobacteria and Bacteroidetes, respectively. Presence of photosynthetic bacteria, ammonia oxidizers, and nitrogen fixers along with bacteria capable of surviving on simple and unlikely Carbon sources like DMF was indicative of a self-sustaining microbial community. Soil contained Gemm-3, (3% of the total bacteria), a characteristic of Sharan desert soils. Microbial community of Abha has similarity to the microbial community reported from hot Namib desert and not to the cold Antarctic desert.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB33715"],"identifiers":[{"scheme":"BioProject","value":"PRJEB33715"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33715","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb33715:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33715","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb33884","name":"Discover new allele of HLA C*04 in Kuwait","displayTitle":"Discover new allele of HLA C*04 in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Tzu Chi Stem Cell Center"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/10/06; operational lifecycle is not asserted.","statusEvidenceDate":"2019-10-06","description":"Discover new allele of HLA C*04 in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB33884"],"identifiers":[{"scheme":"BioProject","value":"PRJEB33884"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33884","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb33884:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB33884","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb34466","name":"Human Bocavirus in Kuwait","displayTitle":"Human Bocavirus in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Department of Microbiology, Faculty of Medicine"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/09/21; operational lifecycle is not asserted.","statusEvidenceDate":"2019-09-21","description":"Human bocavirus (HBoV) was first discovered in 2005 in respiratory samples from patients with suspected acute respiratory tract infection (ARTI) using metagenomics approaches. HBoV-1 has been predominantly diagnosed in the respiratory tract. However, other related HBoV types, namely HBoV2, HBoV3, and HBoV4, were later discovered and have been found mainly in human stool samples. The epidemiology, genetic diversity, and clinical involvement of HBoV in respiratory disease are unknown in Kuwait. Thus, the present study aims to evaluate the prevalence and genetic diversity of HBoV in patients with respiratory diseases in Kuwait and to study the clinical outcome among these patients","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB34466"],"identifiers":[{"scheme":"BioProject","value":"PRJEB34466"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB34466","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb34466:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB34466","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb34914","name":"Papiliotrema laurentii fungemia in a premature, very low-birth-weight neonate in Kuwait successfully treated with liposomal amphotericin B","displayTitle":"Papiliotrema laurentii fungemia in a premature, very low-birth-weight neonate in Kuwait successfully treated with liposomal amphotericin B","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/10/18; operational lifecycle is not asserted.","statusEvidenceDate":"2019-10-18","description":"Cryptococcus spp. include human pathogens (e.g. C. neoformans and C. gattii) and environmental saprophytes such as Cryptococcus laurentii (=Papiliotrema laurentii) and Cryptococcus albidus (=Papiliotrema albidus) which are largely considered as non-pathogenic to humans with a normal immune system. The first case of P. laurentii fungemia in a premature, low-birth-weight neonate is described from Kuwait. Repeated bloodstream isolates were obtained and were tentatively identified as P. laurentii by Vitek 2. The identity was established by PCR-sequencing of rDNA. The baby was successfully treated by liposomal amphotericin B.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB34914"],"identifiers":[{"scheme":"BioProject","value":"PRJEB34914"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB34914","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb34914:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB34914","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb35500","name":"Emergence of a truly multidrug-resistant Candida kefyr (Kluveromyces marxianus) in Kuwait","displayTitle":"Emergence of a truly multidrug-resistant Candida kefyr (Kluveromyces marxianus) in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/01/08; operational lifecycle is not asserted.","statusEvidenceDate":"2020-01-08","description":"Background: Candida kefyr, an emerging multidrug-resistant yeast, causes invasive candidiasis in susceptible patients. This study determined the prevalence of C. kefyr among yeast isolates collected during 2011-2018 in Kuwait. Antifungal susceptibility testing (AST) and genotypic heterogeneity among C. kefyr was also studied. Methods: C. kefyr isolates were identified by CHROMagar Candida, Vitek 2 and PCR amplification of rDNA. Genotypic heterogeneity was determined with microsatellite-/minisatellite-based primers and by PCR-sequencing of IGS1 region of rDNA. AST was performed by Etest. Molecular basis of resistance to fluconazole was studied by PCR-sequencing of ERG11. Findings: Among 8257 yeast strains, 69 C. kefyr (including four bloodstream and seven other invasive) isolates were detected by phenotypic and molecular methods. Isolation from urine and respiratory samples from female and male patients was significantly different (P=0.001). Fingerprinting with microsatellite-/minisatellite-based primers apparently identified only three types. IGS1 sequencing identified seven haplotypes among 27 selected isolates. Four isolates showed reduced susceptibility to amphotericin B (AMB) and one isolate to all (AMB, fluconazole, voriconazole and caspofungin/micafungin) antifungals tested. Fluconazole-resistant isolate contained wild-type Erg11 protein.Conclusions: Although frequency of isolation of invasive and non-invasive C. kefyr was stable during the study period, four of five isolates with reduced susceptibility to antifungals were obtained during last four years indicating increasing trend of reduced susceptibility to antifungals. The invasive and AMB-resistant isolates were genotypically heterogeneous.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB35500"],"identifiers":[{"scheme":"BioProject","value":"PRJEB35500"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB35500","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb35500:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB35500","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb36000","name":"A novel multidrug resistant Klebsiella pneumoniae strain harboring three co-occurring colistin resistance genes","displayTitle":"A novel multidrug resistant Klebsiella pneumoniae strain harboring three co-occurring colistin resistance genes","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/01/10; operational lifecycle is not asserted.","statusEvidenceDate":"2020-01-10","description":"Colistin represents the last-resort antibiotics used for treating carbapenem-resistant Enterobacteriaceae-related infections. Colistin resistance has been reported in Saudi Arabia in multidrug resistant (MDR) Gram-negativebacteria in up to 40% of the cases. Though, only a handful of colistin resistance cases were genetically investigated due to the lack of an approved clinical microbiology method for resistance detection. In this study, we aimed tocharacterize and survey the presence of mobilized colistin resistance (mcr) genes in MDR Klebsiella pneumoniae clinical isolates using whole-genome sequencing (WGS) as part of hospital-wide surveillance for antimicrobial resistance genes in Gram-negative MDR bacterial pathogen isolates (n=1,633) during 2014-2018 in Saudi Arabia. One of the isolates (NGKP-54) was cultured from the sputum of a female patient with pneumonia in her late-60s who was being treated for Non-Small-Cell Lung Carcinoma in 2015. We produced the complete genome of theNGKP-54 strain using a combination of short and long reads WGS and in silico multilocus sequence typing (MLST). The NGKP-54 isolate was assigned a novel sequence type (ST3513) that is a single-locus variant of ST1425. The ST1425 variant has been reported in the Middle East and known to be involved in the production of carbapenemases. The NGKP-54 isolate was resistant to aminoglycoside, cephalosporin, and fluoroquinolone,as determined by conventional microbiological protocols and colistin broth microdilution (BMD). The NGKP-54strain conferred resistance to colistin with MIC of 4 μg/ml. Analysis of the complete genome revealed the presence of three colistin-resistance determining genes including mcr-1, mcr-8, and a partial mcr-8 gene. We observed that allthree mcr-genes contributed to the colistin resistance of NGKP-54 in complementation experiments. Expression of mcr-1 and mcr-8 genes in E. coli DH5α independently conferred colistin resistance at higherconcentration than the original NGKP-54 isolate. Our phylogenetic analysis of all mcr variants revealed MCR-8 and MCR-5 are the closest orthologues to EptA. We have identified for the first time, the presence of mcr-8 in a colistinresistant K. pneumoniae strain in Saudi Arabia and this is the first global report of the co-occurrence of three mcr-encoding genes in the same strain. Saudi Arabia is a hub for annual mass-gathering events, thus increasing the chances that multi-resistant K. pneumoniae can potentially spread globally unless closely monitored for the presence of resistant-determinant loci using WGS-based protocols.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB36000"],"identifiers":[{"scheme":"BioProject","value":"PRJEB36000"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB36000","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb36000:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB36000","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb36024","name":"Development and Diversity of Bacterial Biofilms in Response to Internal Tides, a case study off the Coast of Kuwait","displayTitle":"Development and Diversity of Bacterial Biofilms in Response to Internal Tides, a case study off the Coast of Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Sultan Qaboos University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/01/08; operational lifecycle is not asserted.","statusEvidenceDate":"2020-01-08","description":"Information pertaining to changes in abundance and composition of microbial communities on offshore platforms in relation to changes in environmental conditions due to internal tides are scarce. In this study, artificial substrata were deployed at two locations on a gently sloping seabed off the coast of Kuwait. The abiotic factors at the two sites were recorded spatially and temporally using time-series measurements and continuous turbulence profiling for 13 days. Results showed variations in water density between the upper and deeper waters with the pycnocline undulating between 6 and 15 m depth at both locations. In the water layer beneath the pycnocline, significant current shear due to the internal tides led to higher turbidity coupled with lower dissolved oxygen (DO) and chlorophyll a concentration. The microbiological data showed a significant decrease in the biofilm total biomass, bacterial counts and phototrophic biomass with increase in depth at both locations. The 16S rRNA amplicon sequence non-metric multidimensional (NMDS) scaling analysis revealed that biofouling bacterial communities affected by depth with Alphaproteobacteria and Bacteroidetes members dominated upper and deeper water at both locations. The based-ordination analysis revealed that biofouling bacterial communities at 3 m were different than at 15 m, with a percentage of shared Operational taxonomic units (OTUs) ≤50% between locations and between depths. Despite the limitations of the study, the power of the employed system is demonstrated in the results that shed light on the significance of prevailing environmental conditions associated with internal tides in shaping the biofilm community in subtropical offshore water systems.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB36024"],"identifiers":[{"scheme":"BioProject","value":"PRJEB36024"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB36024","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb36024:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB36024","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb36481","name":"Antifungal drug susceptibility, molecular basis of resistance to echinocandins and molecular epidemiology of fluconazole resistance among clinical Candida glabrata isolates in Kuwait","displayTitle":"Antifungal drug susceptibility, molecular basis of resistance to echinocandins and molecular epidemiology of fluconazole resistance among clinical Candida glabrata isolates in…","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/02/04; operational lifecycle is not asserted.","statusEvidenceDate":"2020-02-04","description":"Candida glabrata is the second/third most common cause of invasive candidiasis in at-risk patients. It is less susceptible to azoles and also readily develops resistance to echinocandins. This study performed molecular identification, antifungal susceptibility testing (AST) and determined molecular basis of resistance of C. glabrata isolates to echinocandins in Kuwait. Clinical C. glabrata isolates (n=75) identified by Vitek2 were tested by multiplex PCR and/or PCR-sequencing of rDNA. AST to fluconazole, caspofungin, micafungin and amphotericin B was determined by Etest and to micafungin by reference broth microdilution (BMD). Mutations in hotspot-1 and hotspot-2 of FKS1 and FKS2 were detected by PCR-sequencing. PCR-sequencing of ERG11 was also performed for fluconazole-resistant C. glabrata. All 75 Vitek2-characterized C. glabrata isolates were identified as C. glabrata sensu stricto by mPCR/rDNA sequencing. Based on EUCAST breakpoints, 70 (93.3%) isolates were susceptible (MIC = <0.032 μg/ml) and five (6.7%) were resistant (MIC = >0.032 μg/ml) to micafungin by Etest and BMD (essential agreement, 93%; categorical agreement, 100%). Three micafungin-resistant isolates were resistant and two were susceptible dose-dependent to caspofungin. Four and one micafungin-resistant isolate contained S663P and ∆659F mutation, respectively, in hotspot-1 of FKS2. No nonsynonymous mutation was detected in 70 micafungin-susceptible isolates. Micafungin-resistant isolates were genotypically distinct strains. Fluconazole, amphotericin B and multidrug resistance was detected in 36, four and one isolate, respectively. Only one of 36 fluconazole-resistant isolate harbored nonsynonymous mutations in ERG11. Multiple loci-based fingerprinting studies showed that 34 of 36 fluconazole-resistant isolates were genotypically distinct strains. Our data show that micafungin susceptibility reliably identifies echinocandin-resistant isolates and may serve as a surrogate marker for predicting susceptibility/resistance of C. glabrata to caspofungin. All micafungin-resistant isolates harbored a nonsynonymous/deletion mutation in hotspot-1 of FKS2 and were genotypically distinct strains. Fingerprinting data also showed that fluconazole resistance development in C. glabrata is not clonal in Kuwait.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB36481"],"identifiers":[{"scheme":"BioProject","value":"PRJEB36481"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB36481","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb36481:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB36481","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb36683","name":"A fatal outbreak of hypervirulent and multidrug resistant clone (ST2096) of Klebsiella pneumoniae silently transmitting in a Saudi Arabia western region hospital: a clinical and molecular surveillance study","displayTitle":"A fatal outbreak of hypervirulent and multidrug resistant clone (ST2096) of Klebsiella pneumoniae silently transmitting in a Saudi Arabia western region hospital: a clinical…","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/02/11; operational lifecycle is not asserted.","statusEvidenceDate":"2020-02-11","description":"We identified an ongoing clonal transmission of hypervirulent MDR ST2096 K. pneumoniae strain of the cc14 followed by the global high-risk clone ST14 of the same clonal group. ST2096 transmitted silently within the hospital and was found to be associated with high mortality (58.6%). The transmission of ST2096 predominated over other sequence types until the end of our collection period on March 2018. We identified the outbreak index case arriving to the hospital on December 2016. The index case carried a hypervirulent and highly resistant K. pneumoniae ST2096 isolate had been transferred between several wards for treatments and clinical-related tests. Consequently, the transmission network model illustrated the spread of ST2096 from the ward A to the intensive care unit (ICU) and other wards that hosts long-term care patients within the hospital. The transmission network analysis and the genetic distance between isolates suggested the involvement of other unsampled isolates that could have been colonizing hospital staff or contaminating within the hospital environmental. Furthermore, the identified outbreak wards were found to be directly linked to shortage and rotation of health-care staff, antibiotic usage and patient interaction and length of stay.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB36683"],"identifiers":[{"scheme":"BioProject","value":"PRJEB36683"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB36683","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb36683:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB36683","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb37471","name":"Effect of saturation-level salinities on metabolic activities in a microbial mat from a saltflat","displayTitle":"Effect of saturation-level salinities on metabolic activities in a microbial mat from a saltflat","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["UNIVERSITY OF VIENNA"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/07/11; operational lifecycle is not asserted.","statusEvidenceDate":"2020-07-11","description":"Microbial mats are densely populated, stratified ecosystems often performing a complete cycling of elements. Such metabolically diverse and self-sustaining communities can also be found at hypersaline conditions. In this study we investigated the biogeochemical activities and responsible microbial communities in salt-crust covered microbial mats growing at the verge of salt-saturation on a coastal sabkha in Oman. Thereby we explored the salinity limits for key microbial processes and potential protective properties of the salt crust with a combination of geochemical and molecular ecology methods, including microsensor profiles, hyperspectral imaging, pigment extraction, and fluorescence microscopy combined with 16S rRNA gene amplicon sequencing.While the salt crust did not reduce light intensities or heat, the microbial community remained active under these multi-stress conditions. Sulfate reduction, aerobic respiration and anoxygenic photosynthesis could be measured at saturation-level salinity (40%), while oxygenic phototrophs appeared to be more susceptible to such high salt concentrations. Oxygenic photosynthesis was still measurable at 30% salinity, but was completely inhibited at salt saturation and only resumed after significant dilution of the salt. High-resolution amplicon sequencing revealed a diverse microbial community including two layers of Cyanobacteria, high relative abundances of Chloroflexi and Archaea.Our study describes a microbial community adapted to exist at near salt-saturation, but also reveals a salinity limit for its carbon input via oxygenic photosynthesis. Thus, this community has to be depending on salt dilution by tides or floods to be truly self-sustaining.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB37471"],"identifiers":[{"scheme":"BioProject","value":"PRJEB37471"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB37471","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb37471:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB37471","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb37676","name":"First isolation of Candida nivariensis strain in Kuwait","displayTitle":"First isolation of Candida nivariensis strain in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Asaddullah"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/04/09; operational lifecycle is not asserted.","statusEvidenceDate":"2020-04-09","description":"Fungal infections due to rare and uncommon yeast species are increasing globally in prevalence and are associated with high mortality rates. Here, we describe the first isolation and characterization of Candida nivariensis cultured from a tracheal aspirate sample of a 35-year-old Kuwaiti man, who suffered from epilepsy, in Kuwait. The yeast isolate was identified by multiplex PCR and confirmed by the sequencing of the ITS region of rDNA. This report extends the geographic distribution of C. nivariensis to the Middle East and highlights the pathogenic potential of uncommon yeast species causing infections in susceptible hosts.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB37676"],"identifiers":[{"scheme":"BioProject","value":"PRJEB37676"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB37676","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb37676:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB37676","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb38089","name":"Metagenomics study of an Imported Multidrug-Resistant Mycobacterium leprae, Saudi Arabia, 2017","displayTitle":"Metagenomics study of an Imported Multidrug-Resistant Mycobacterium leprae, Saudi Arabia, 2017","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/05/02; operational lifecycle is not asserted.","statusEvidenceDate":"2020-05-02","description":"Using shotgun metagenomics, we identified an imported case of multidrug-resistant Mycobacterium leprae in a Filipino resident of Saudi Arabia in 2017. We determined the phylogenomic lineage (3K1) and identified mutations in rpoB and rrs corresponding to the multidrug-resistance phenotype clinically observed. Metagenomics sequencing can be used to identify multidrug-resistant M. leprae.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB38089"],"identifiers":[{"scheme":"BioProject","value":"PRJEB38089"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB38089","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb38089:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB38089","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb38312","name":"Fungi isolated from the gastrointestinal tract of the adult honey bee foragers in Saudi Arabia.","displayTitle":"Fungi isolated from the gastrointestinal tract of the adult honey bee foragers in Saudi Arabia.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Not stated","leadOrganizations":["Matteo Callegari"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/05/21; operational lifecycle is not asserted.","statusEvidenceDate":"2020-05-21","description":"Fungi isolated from the gastrointestinal tract of the adult honey bee foragers belonging to the species Apis mellifera jemenitica and Apis florea, collected in Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB38312"],"identifiers":[{"scheme":"BioProject","value":"PRJEB38312"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB38312","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb38312:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB38312","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb38988","name":"Next-generation sequencing identifies a novel CDR1 mutation in fluconazole-resistant Candida parapsilosis in Kuwait","displayTitle":"Next-generation sequencing identifies a novel CDR1 mutation in fluconazole-resistant Candida parapsilosis in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Asaddullah"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/06/23; operational lifecycle is not asserted.","statusEvidenceDate":"2020-06-23","description":"Resistance to fluconazole (FLU), mediated by mutations in ERG11 and/or overexpression of efflux pumps MDR1 and CDR1, among clinical Candida parapsilosis isolates is increasing in many countries including Kuwait. This study performed next-generation sequencing (NGS) to identify novel mutations in target genes involved in conferring resistance to FLU in C. parapsilosis. One FLU-susceptible (Kw3259/15) and 2 FLU-resistant (Kw2006/15 and Kw1590/18) C. parapsilosis isolates with known ERG11 alterations were used. NGS was performed on llumina Hiseq X platform and raw paired-end reads were mapped to the C. parapsilosis CDC317 genome with Burrows wheeler aligner. Data were compressed using SAMtools and duplicated reads were removed by Picard tools. Variants calling was done by Genome Analysis and data were annotated with Ensemble Variants Effect Predictor and Candida Genome Database. Additionally, 40 C. parapsilosis isolates including 19 FLU-susceptible and 21 FLU-resistant isolates were screened by Sanger sequencing for mutation in ERG11 and CDR1 region.Compared to reference CDC317 genome, NGS small variants of 6003, 5177 and 1915 were identified in Kw3259/15, Kw2006/15 and Kw1590/18, respectively, with an average coverage of 175X. Kw3259/15 contained N283Y in ERG11, S208G & S304G in ERG6 and I1287V in CDR1 which represent genetic polymorphisms. Kw2006/15 contained resistance-conferring Y132F in addition to previously known mutation, R398I, in ERG11, S208G & S304G in ERG6 and I396V in MDR1. Kw1590/18 contained a novel mutation (N1132D) in CDR1 which has not been described previously in addition to S208G & S304G in ERG6. Furthermore, MAS-PCR of ERG11 and PCR sequencing of CDR1 identified Y132F and N1132D mutations in 6 of 21 and 11 of 21 fluconazole-resistant isolates, respectively. These mutations were absent in 20 fluconazole-susceptible isolates. Our data show that NGS identified all genetic alterations previously detected by PCR-sequencing of ERG11 in three C. parapsilosis isolates. The N1132D mutation in ERG11 was found in 11 of 21 (52%) fluconazole-resistant isolates only. N1132D mutation in CDR1 was detected in 11 FLU-resistant isolate and absent in all which has not been described previously. Further studies are warranted to validate the role of N1132D mutation in CDR1 in conferring resistance to FLU in C. parapsilosis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB38988"],"identifiers":[{"scheme":"BioProject","value":"PRJEB38988"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB38988","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb38988:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB38988","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb39752","name":"Whole-genome sequencing to investigate the genetic diversity of Omani indigenous chickens.","displayTitle":"Whole-genome sequencing to investigate the genetic diversity of Omani indigenous chickens.","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["THE ROSLIN INSTITUTE"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/02; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-02","description":"The study consists of 27 indigenous chicken samples from Oman. Samples were collected from the town called Barka from the Northern part of Oman. The samples were sequenced on Illumina HiSeqX 10 platform with an average coverage > 30x.  The samples have been collected by: Mohammed Ali Al-Abri, Assistant Professor, Department of Animal and Veterinary SciencesCollege of Agricultural & Marine Sciences, Sultan Qaboos UniversityP.O. Box 34, Al-Khoud123, Muscat, Oman","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB39752"],"identifiers":[{"scheme":"BioProject","value":"PRJEB39752"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB39752","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb39752:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB39752","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb40003","name":"Genome sequence of the genetically modified mutant of P. falciparum (NF54 strain) PfΔmei2","displayTitle":"Genome sequence of the genetically modified mutant of P. falciparum (NF54 strain) PfΔmei2","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/08/25; operational lifecycle is not asserted.","statusEvidenceDate":"2021-08-25","description":"In the PfΔmei2 mutant the Open Reading Frame (ORF) of mei2 (PF3D7_ 0623400) has been removed from the genome of the human malaria parasite P. falciparum (NF54 strain) using well-established CRISPR/Cas9 technology. The mei2 gene of WT PfNF54 was deleted using a donor DNA plasmid and 2 different sgRNA-donor containing plasmids targeting the mei2 gene using the CRISPR/Cas9 technology as described by Marin-Mogollon et al 1. PfΔmei2 has been engineered to remove nearly all heterologous DNA that is introduced for deletion of the mei2 ORF; what is still present are 34 bp nucleotide sequence (FRT sequence). Heterologous DNA used to generate the mei2 deletion was flanked by two FRT sequences and has been excised in the presence of FLPe recombinase, leaving one FRT sequence in the genome, flanked by 16bp and 14bp cloning restriction sites. This method of removal of heterologous DNA by FLPe recombinase is similar to the method described by Roestenberg et al 2. Whole genome sequencing showed correct deletion of the mei2 gene, confirmed the absence of sequences used in the CRISPR/Cas9, gDNA and flpe plasmids (cas9, ampicillin, blasticidin, hdhfr, yfcu, flpe recombinase) and showed the absence of unwanted recombination events in endogenous 5’- and 3’-UTR sequences, that have been used in the plasmids to drive gene expression.  Whole genome sequencing was performed at the King Abdullah University of Science and Technology (KAUST, Thuwal, Saudi Arabia Prof. Arnab Pain). A total of 200 ng of DNA was used for DNA library preparation using NebNext Ultra II DNA library prep kit for Immumina (NEB). Upon library quantification and size verification, DNA library sequencing was carried out on a MiSeq platform (Illumina) that produced 2x150 bp paired-end reads. The quality of the raw reads was assessed using FATSQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc). Low-quality reads and Illumina adaptors sequences from the end of the reads were removed using Trimmomatic (PMID: 24695404). Quality trimmed reads were mapped to P. falciparum 3D7 reference genome (release 40 in PlasmoDB- http://www.plasmoddb.org) using BWA 3. Read pairing information, flag and duplicate reads were removed using Picard’s CleanSam, FixMateInformation, and MarkDuplicates tools. SNPs were called using the genome analysis tool kit (GATK) best practices pipeline 4. Identified SNPs were filtered using vcftools to keep high-quality SNP with the quality score (Q) ≥ 30 and depth (d) ≥ 50. A total of 167 high-quality SNPs were identified. SNPs were annotated and their effect on coding sequences of genes was done via snpEFF. For insertion and deletion (InDel) identification, raw gapped alignment were realigned using GATK RealignerTargetCreator and IndelRealigner tools. Variants were called using bcftool’s mpileup and call tools. Variants were tagged with quality score (Q) ≥ 30 and depth (d) ≥ 50 tagged using vcf-annotate option and only InDels with quality score (Q) ≥ 30 and depth (d) ≥ 100 were filtered for further analysis. Insertion between 20-2000 bp and deletion between 20-2000 bp were identified using GATK’s SelectVariants tool. Variants were tagged with quality score (Q) ≥ 30 and depth (d) ≥ 50 tagged using vcf-annotate option and only InDels with a quality score (Q) ≥ 30 and depth (d) ≥ 100 were filtered for further analysis. Insertion between 20-2000 bp and deletion between 20-2000 bp were identified using GATK’s SelectVariants tool.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB40003"],"identifiers":[{"scheme":"BioProject","value":"PRJEB40003"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB40003","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb40003:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB40003","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb41828","name":"RNAseq breast cancer cohort from Qatar","displayTitle":"RNAseq breast cancer cohort from Qatar","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["JD_QBRI (Decock lab)"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/12/31; operational lifecycle is not asserted.","statusEvidenceDate":"2020-12-31","description":"Total RNAseq analysis of bulk breast tumors from cancer patients, diagnosed in Qatar.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB41828"],"identifiers":[{"scheme":"BioProject","value":"PRJEB41828"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB41828","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb41828:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB41828","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb42421","name":"Innate and adaptive immune genes associated with MERS-CoV infection in dromedaries","displayTitle":"Innate and adaptive immune genes associated with MERS-CoV infection in dromedaries","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["University of Veterinary Medicine, Vienna (Vetmeduni Vienna)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/09/15; operational lifecycle is not asserted.","statusEvidenceDate":"2021-09-15","description":"In order to improve our knowledge on MERS-CoV infection and identify potentially significant genomic regions involved in the   immune responses of dromedaries, a total of 121 dromedaries from United Arab Emirates (UAE) were characterized phenotypically, and 100 immune response genes were sequenced.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB42421"],"identifiers":[{"scheme":"BioProject","value":"PRJEB42421"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB42421","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb42421:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB42421","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb43273","name":"rdance of type 1 diabetes in families with HLA-DR4 and HLA-DR3 haplotypes from the United Arab Emirates","displayTitle":"rdance of type 1 diabetes in families with HLA-DR4 and HLA-DR3 haplotypes from the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Center for Biotechnology, Khalifa University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/04/23; operational lifecycle is not asserted.","statusEvidenceDate":"2021-04-23","description":"The classical class II haplotypes of the Major Histocompatibility Complex (MHC) that are associated with Type 1 diabetes (T1D) were identified in five families from the United Arab Emirates (UAE). Using genomic DNA, Segregation analysis were performed on 5 families with the disease, 3 with one offspring and 2 with 2 children diagnosed with T1D.  Three HLA-DR4 haplotypes were identified: HLA-DRB1*04:01:01:NC-HLA-DQB1*03:02:01:01; HLA- DRB1*04:02:01-HLA-DQB1*03:02:01; HLA-DRB1*04:05:01-HLA-DQB1*02:02:01:02, all previously identified in studies of the Arabian population. There was on HLA-DR3 haplotype, namely HLA*03:01:01:NC-HLA-DQB1*02:01:01. Results: In the 10 parents from the 5 families, 9 had at least one HLA-DR4 and/ HLA-DR3 haplotype which potentially predisposes them to T1D. Of these 9 parents, 3 were heterozygous for HLA-DR4 / HLA-DR3 and one was homozygous for HLA-DR3. At face value these parents should have succumbed to T1D but have not. The youngest parent was born in the 1980s. In two families, the HLA-DR and HLA-DQ genotypes were identical between the parent; who was unaffected; and offspring who were diagnosed with T1D at a young age. Although the genotypes were identical, the haplotypes were different, albeit marked by the same alleles. Epistatic interaction between candidate genes within and/or separate from the MHC could be at play. Another possible explanation lies in the possibility of an environmental trigger. The socioeconomic condition of the UAE changed rapidly in the 1980s, and dramatic changes to diet, healthcare, sanitation and lifestyle, factors that have been suggested in studies elsewhere.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB43273"],"identifiers":[{"scheme":"BioProject","value":"PRJEB43273"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB43273","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb43273:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB43273","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb44728","name":"First case of artemisinin treatment failure of Plasmodium falciparum malaria from Tanzania","displayTitle":"First case of artemisinin treatment failure of Plasmodium falciparum malaria from Tanzania","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/05/20; operational lifecycle is not asserted.","statusEvidenceDate":"2022-05-20","description":"Emergence of Artemisinin-resistant (ART-R) parasites in different pockets of Africa would pose a major health crisis. While the presence of Artemisinin resistant Plasmodium falciparum has been well documented in many Southeast Asian countries, only two cases of de novo emergence of artemisinin resistance have been reported from Africa to date: one from Equatorial Guinea(Lu et al., 2017) and the other one from Rwanda(Uwimana et al., 2020). Both studies have implicated M579I and R561H mutations in the Kelch13 protein in the underlying resistance phenotype. Here we report an ART-R P. falciparum clinical case in Oman that was contracted in Dar es Salaam, Tanzania (East Africa) and resulted in treatment failure. We provide a comprehensive mutational footprint of the genome of this imported clinical isolate in Oman and provide detailed phylogenomic evidence of the East African origin of the parasite. By employing a CRISPR-Cas9-mediated gene editing protocol, we provide functional evidence implicating a I723V mutation in the PfATPase6 gene in low level of Artemisinin tolerance in a lab-adapted line (NF54) of the parasite by Ring-stage Survival Assays (RSA).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB44728"],"identifiers":[{"scheme":"BioProject","value":"PRJEB44728"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB44728","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb44728:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB44728","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb45515","name":"Saudi Arabian SARS-CoV-2 genomes","displayTitle":"Saudi Arabian SARS-CoV-2 genomes","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/11/27; operational lifecycle is not asserted.","statusEvidenceDate":"2021-11-27","description":"Here, we sequenced 892 SARS-CoV-2 genomes collected from patients in Saudi Arabia from March to August 2020. Nasopharyngeal swab samples were collected in COVID-19 patients with various grades of clinical disease manifestations – consisting of severe, mild and asymptomatic symptoms. The anonymized samples were amassed from 8 hospitals and one quarantine hotel located in Madinah, Makkah, Jeddah and Riyadh.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB45515"],"identifiers":[{"scheme":"BioProject","value":"PRJEB45515"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB45515","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb45515:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB45515","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb47650","name":"Homogeneity of Arabian Peninsula dromedary camel populations with signals of geographic distinction based on whole genome sequence data","displayTitle":"Homogeneity of Arabian Peninsula dromedary camel populations with signals of geographic distinction based on whole genome sequence data","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait university"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/12/21; operational lifecycle is not asserted.","statusEvidenceDate":"2021-12-21","description":"The main aim of this study is to explore the genetic diversity and structure of dromedary camels from the Arabian Peninsula. This study shows that Arabian Peninsula dromedary populations are homogenous genetically. A degree of genetic distinction has been revealed among them that classify the different populations into geographic groups; North, center and west; southwest; and southeast.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB47650"],"identifiers":[{"scheme":"BioProject","value":"PRJEB47650"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB47650","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb47650:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB47650","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb49171","name":"Diversity of MCR-1 producing Enterobacterales isolated in poultry farms in the United Arab Emirates","displayTitle":"Diversity of MCR-1 producing Enterobacterales isolated in poultry farms in the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["PTE Medical Microbiology"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/02/11; operational lifecycle is not asserted.","statusEvidenceDate":"2022-02-11","description":"Background: Although human infections with Mcr-producing Enterobacteriaceae have been reported from the Arabian Peninsula, mcr in strains of animal origin has not been studied. Materials/methods: Ten composite faecal samples were collected in each of four geographically distant poultry farms in Abu Dhabi Emirate. Ten colonies from McConkey agar containing 1mg/L colistin from each sample were PCR-screened for mcr-1,-2,-3,-4,-5. One isolate representing each distinct plasmid profiles were selected for susceptibility testing and for pulsed field gel electrophoresis (PFGE). Transfer of the mcr gene into E. coli K12 was attempted. Plasmids were compared by RFLP using HincII, NdeI and NsiI restriction endonucleases.  Results: mcr-1 positive colonies were identified in 36 of the 40 samples. The 40 isolates (37 Escherichia coli, two Klebsiella pneumoniae and one Salmonella enterica) selected were resistant to ampicillin and colistin (MIC range 4->256 mg/L) with variable resistance to 3rd generation cephalosporins, tetracyclines, quinolones, co-trimoxazole and aminoglycosides. Of the 37 E. coli 28 strains were typable by PFGE giving 12 distinct patterns. Plasmids representing 3 molecular masses: >200 kb, 60 kb and 35 kb were successfully transferred from 6, 26 and 4 isolates, respectively. The >200 kb plasmids represented three, the 60 kb plasmids two, and the 35 kb plasmids a single RFLP patterns. Co-transfer of ampicillin, chloramphenicol, tetracycline resistance with the mcr-1 gene was observed in case of the >200 kb plasmid.Conclusions: From the four chicken farms multiple species of Enterobacteriaceae exhibiting a variety of PFGE patterns, carrying the mcr-1 gene on plasmids of 3 distinct molecular weight showing different RFLP patterns were isolated. Similar strains and similar plasmids were present in multiple farms. These data show that the farms are heavily infested with mcr-1 carrying strains with the possibility to transfer it, via the food chain, to humans.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB49171"],"identifiers":[{"scheme":"BioProject","value":"PRJEB49171"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB49171","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb49171:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB49171","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb49402","name":"Novel Alternaria spp. from Qatar sea water","displayTitle":"Novel Alternaria spp. from Qatar sea water","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Westerdijk Fungal Biodiversity Institute"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/01/04; operational lifecycle is not asserted.","statusEvidenceDate":"2023-01-04","description":"A total of 177 isolates belonging to genus Alternaria were isolated during a survey of the mycobiota of the coastal marine environment surrounding Qatar. The majority of isolates belonged to Alternaria sect. Alternaria 134/177 (75.7%), followed by Alternaria sect. Ulocladioides 25/177 (14.1 %) and the rest of the 18 isolates belonging to Alternaria spp. Of these 18 isolates, nine isolates belonging to three species, for which we propose the following names: Alternaria halotolerans sp. nov. (4 isolates), Alternaria qatarensis sp. nov. (4 isolates), Alternaria simaisma sp. nov. (1 isolate). The taxonomic novelty of these strains was determined with a polyphasic approach, combining phenotypic, molecular (ITS, LSU and two protein-coding genes gapdh and tef1) and morphological characteristics and phenotypic characteristics.  Phylogenetic analysis showed that each novel species formed a unique clade for 4 loci analyzed and that the species were most closely related to Alternaria. Each of the novel species had unique morphology and could be distinguished by macro- and microscopical characteristics.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB49402"],"identifiers":[{"scheme":"BioProject","value":"PRJEB49402"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB49402","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb49402:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB49402","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb50277","name":"Nation-wide surveillance of carbapenem resistant Enterobacteriaceae in the United Arab Emirates","displayTitle":"Nation-wide surveillance of carbapenem resistant Enterobacteriaceae in the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["PTE Medical Microbiology"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/05/20; operational lifecycle is not asserted.","statusEvidenceDate":"2022-05-20","description":"While CRE is appreciated as a major problem in countries of the Arabian Peninsula, no nation-wide surveillances have been carried out in the region. Here we report on the first such study from the UAE. Between the 1st of July of 2018 and 31st of March 2019, 504 consecutive non-repeat CRE isolates (75.2% of them Klebsiella pneumoniae) were collected from 15 hospitals of the 7 Emirates and subjected to susceptibility testing, PCR-detection of resistance genes and molecular typing by PFGE and cgMLST. Molecular analysis identified four major K. pneumoniae PFGE groups, members of which belonged to ST14 (and its SLVs: ST2096 and ST78) representing 40.6% of K. pneumoniae strains, ST231, CC147 and ST15. , ST14 group members were significantly more likely to be XDR, PDR or resistant to ceftazidime-avibactam, colistin, tigecycline than other K. pneumoniae, and they were present in all but a small hospital. cgMLST identified multiple clusters within ST14, some widespread in the country while others concentrating in specific hospitals. One of them in Qassimi hospital (Sharjah), produced OXA-48-like carbapenemase, while another one (Saqr hospital (RAK)) produced mostly NDM with consequent resistance to ceftazidime-avibactam.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB50277"],"identifiers":[{"scheme":"BioProject","value":"PRJEB50277"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB50277","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb50277:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB50277","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb50668","name":"Fatal breakthrough candidemia in an immunocompromised patient in Kuwait","displayTitle":"Fatal breakthrough candidemia in an immunocompromised patient in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Asaddullah"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/02/07; operational lifecycle is not asserted.","statusEvidenceDate":"2022-02-07","description":"Candida auris is an emerging yeast pathogen that has recently caused major outbreaks in healthcare facilities worldwide. Clinical C. auris isolates are usually resistant to fluconazole and readily develop resistance to echinocandins and amphotericin B (AMB) during treatment. We describe here an interesting case of C. auris infection in an immunocompromised patient who had previously received AMB and caspofungin prophylaxis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB50668"],"identifiers":[{"scheme":"BioProject","value":"PRJEB50668"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB50668","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb50668:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB50668","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb5127","name":"Identifying Molecular Signature of Saudi Thyroid Cancer Using Next Generation Sequencing Technology Based on International Cancer Genome Consortium (ICGC) Guidelines","displayTitle":"Identifying Molecular Signature of Saudi Thyroid Cancer Using Next Generation Sequencing Technology Based on International Cancer Genome Consortium (ICGC) Guidelines","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["King Faisal Specialist Hospital and Research Centre, Saudi Arabia"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/12/18; operational lifecycle is not asserted.","statusEvidenceDate":"2015-12-18","description":"Although papillary thyroid cancer constitutes a significant health burden in Saudi Arabia, it is a poorly understood tumor and this tumor type is largely under- researched. Thyroid cancer is the most common endocrine malignancy and differentiated thyroid cancer (DTC), which includes papillary (PTC) and follicular (FTC) subtypes, accounts for 90% of all thyroid malignancies  In Saudi Arabia, thyroid cancer ranked second only to breast cancer among females, eleventh among males and this increased incidence is prevalent in other Gulf Council Countries (GCC) also. Most patients with DTC do well with traditional therapy which includes total thyroidectomy, radioiodine ablation (RAI) and thyroid hormone suppression. However, some will go on to develop progressive disease that is not amenable to further surgery and/or not responsive to RAI. Currently, there are no clinical or molecular diagnostic tools to predict recurrence and aggressiveness of a subset of PTC. We aim to analyze the genomic DNA sequences of 500 thyroid cancers and the corresponding DNA from blood. With the goal of a better understanding the pathobiology of thyroid carcinogenesis we will use state of the art \"deep sequencing\" technology to decipher the molecular and genetic signature of Saudi PTC. The development of next-generation (NextGen) sequencing technologies has spurred high hopes for the identification of novel biomarkers for disease diagnosis, prognosis, and prediction, including thyroid cancer.  Our objectives will be achieved through the following aims: the studies of specific aim 1 will be the generation of comprehensive catalogues of genomic abnormalities (somatic mutations) in thyroid cancer of the papillary thyroid carcinoma histology subtype which is of clinical and social importance in Saudi Arabia. Specific aim 2 will catalogue for each papillary thyroid carcinoma to include the full range of somatic mutations including single-nucleotide variants, insertions, deletions, copy number changes, translocations and other chromosomal rearrangements. Specific aim 3 will generate complementary catalogues of transcriptomic and epigenomic datasets from selected tumor cases that demonstrate abnormalities from aim 1 and 2.  The outcome of this study will provide a better understanding of PTC and should have important clinical implications, as it could result in the development of new and better strategies for targeted therapeutic intervention for the treatment of Saudi Arabian PTC tumors.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB5127"],"identifiers":[{"scheme":"BioProject","value":"PRJEB5127"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB5127","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb5127:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB5127","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb5139","name":"A systematic analysis of two whole genomes and thirteen exomes from Saudi Arabian tribes","displayTitle":"A systematic analysis of two whole genomes and thirteen exomes from Saudi Arabian tribes","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["DASMAN DIABETES INSTITUTE"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/02/21; operational lifecycle is not asserted.","statusEvidenceDate":"2014-02-21","description":"The Kuwaiti population is composed of three genetic subgroups of Persian, Saudi Arabian tribe and Bedouin origin. The Saudi Arabian tribe subgroup traces its origin to the Najd region of Saudi Arabia. By sequencing two whole genomes and thirteen exomes from this subgroup at high coverage (>40X), we identify 4,950,724 Single Nucleotide Polymorphisms (SNPs), 515,802 indels and 39,762 structural variations. Of the total identified variants, 10,098 (8.3%) exomic SNPs, 139,923 (2.9%) non-exomic SNPs, 5,256 (54.3%) exomic indels, and 374,959 (74.08%) non-exomic indels are ‘novel’. Up to 8,070 (79.9%) novel biallelic exomic SNPs are seen in low frequency (minor allele frequency < 5%). We observe 5,462 known and 1,004 novel potentially deleterious nonsynonymous SNPs. Allele Frequencies of common SNPs derived using the 15 exomes is significantly correlated with those derived using genotype data from a larger cohort of 48 individuals (Pearson correlation coefficient, 0.91; p <2.2x10-16).  A set of 2,485 SNPs show significantly different allele frequencies as compared to populations from other continents. Two notable variants having risk alleles seen in high frequencies in the Saudi Arabian tribe subgroup are: a nonsynonymous deleterious SNP (rs2108622, CYP4F2 gene) associated with warfarin dosage levels required to elicit normal anticoagulant response; and a 3’UTR SNP (rs6151429, ARSA gene) associated with Metachromatic Leukodystrophy. Hemoglobin Riyadh variant (identified for the first time in a Saudi Arabian woman) is observed in the presented exome data. The profile of the mitochondrial haplogroups derived from the 15 individuals is consistent with the haplogroup diversity seen in Saudi Arabian natives, who are believed to have received substantial gene flow from Africa and eastern provenance. We present the first genome resource for designing genetic studies in Saudi Arabian tribe subgroup.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB5139"],"identifiers":[{"scheme":"BioProject","value":"PRJEB5139"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB5139","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb5139:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB5139","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb51505","name":"Qatar variation catalogue","displayTitle":"Qatar variation catalogue","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["European Bioinformatics Institute","Girotto Giorgia(IRCCS \"Burlo Garofolo\")","Giuseppe Nardone (IRCCS \"Burlo Garofolo\")","Massimiliano Cocca (IRCCS \"Burlo Garofolo\")","Massimo Mezzavilla (IRCCS \"Burlo Garofolo\")","Paolo Gasparini(IRCCS \"Burlo Garofolo\")"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/03/12; operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-12","description":"Ancestry-related distribution of Runs of homozygosity and functional variants in Qatari population","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB51505"],"identifiers":[{"scheme":"BioProject","value":"PRJEB51505"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB51505","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb51505:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB51505","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb52407","name":"WGS sequence of Staphyloccus auerues (MSSA/MRSA) across different geolocation in saudi arabia. Samples were collected from large tertary care hospitals.","displayTitle":"WGS sequence of Staphyloccus auerues (MSSA/MRSA) across different geolocation in saudi arabia. Samples were collected from large tertary care hospitals.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["computational bioscience research center"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/10/03; operational lifecycle is not asserted.","statusEvidenceDate":"2022-10-03","description":"Methicillin-resistant Staphylococcus aureus (MRSA) is a symbol of notorious bacteria that impacts health facilities, and nursing home in addition to community. It causes infection ranging from superficial skin infections to live threatening bacterima and deep seated infections. A very challenging pathogen for clinician due to acquisition of other drug resistance genes limiting the treatment options.  Monitoring the distribution and in particular the resistome of MRSA is crucial for public health policy. Currently, data from Saudi Arabia is limited. We sequenced over 800 clinical isolates and share the sequencing data for MRSA isolates. The aim is to exposed more sequencing effort to public domain and allow more access to isolates, building research database for infectious diseases and create a platform to share data among scientists and clinicians. Supplied with automated workflow for microbial genomics and bioinformatics, it does not require a substantial experience to extract knowledge from sequence data for non bioinformatician. The over all analyzed MRSA genomes across regions in Saudi Arabia shows a high degree of mix and dissemination. There are multiple sequence types across regions with disseminated clonal complexes.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB52407"],"identifiers":[{"scheme":"BioProject","value":"PRJEB52407"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB52407","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb52407:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB52407","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb53336","name":"Occurrence of Common Chiffchaff Phylloscopus collybita subspecies menzbieri in the United Arab Emirates confirmed by genetic analysis.","displayTitle":"Occurrence of Common Chiffchaff Phylloscopus collybita subspecies menzbieri in the United Arab Emirates confirmed by genetic analysis.","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Not stated","leadOrganizations":["UNIVERSITY OF ABERDEEN"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/10/31; operational lifecycle is not asserted.","statusEvidenceDate":"2022-10-31","description":"Occurrence of Common Chiffchaff Phylloscopus collybita subspecies menzbieri in the United Arab Emirates confirmed by genetic analysis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB53336"],"identifiers":[{"scheme":"BioProject","value":"PRJEB53336"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB53336","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb53336:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB53336","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb53955","name":"signatures of selection on dromedary mitogenome","displayTitle":"signatures of selection on dromedary mitogenome","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait university"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/01/25; operational lifecycle is not asserted.","statusEvidenceDate":"2023-01-25","description":"The two species of the Old World Camelini tribe, dromedary and Bactrian camels, show superior adaptability to the different environmental conditions they populate, e.g. desert, mountains and coastal areas, which might be associated with adaptive variations on their mitochondrial DNA. Here, we investigate signatures of natural selection in the 13-mitochondrial protein-coding genes of different dromedary camel populations from the Arabian Peninsula, Africa and southwest Asia. The full mitogenome sequences of 42 dromedary, 38 domestic Bactrain, 29 wild Bactrian camels and 31 samples representing the New World Lamini tribe reveal species-wise genetic distinction among Camelidae family species, with no evidence of geographic distinction among dromedary camels. We observe gene-wide signals of adaptive divergence between the Old World and New World camels, with evidence of purifying selection among Old World camel species. Upon comparing the different Camelidae tribes, 27 amino acid substitutions across ten mtDNA protein-coding genes were found to be under positive selection, in which, 24 codons were defined to be under positive adaptive divergence between Old World and New World camels. Seven codons belonging to three genes demonstrated positive selection in dromedary lineage. A total of 89 codons were found to be under positive selection in Camelidae family based on investigating the impact of amino acid replacement on the physiochemical properties of proteins, including equilibrium constant and surrounding hydrophobicity. These mtDNA variants under positive selection in the Camelidae family might be associated with their adaptation to their contrasting environments.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB53955"],"identifiers":[{"scheme":"BioProject","value":"PRJEB53955"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB53955","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb53955:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB53955","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb54683","name":"Development of genome-wide SNPs for Nubian ibex (Capra nubiana) to support conservation of wild populations in Oman","displayTitle":"Development of genome-wide SNPs for Nubian ibex (Capra nubiana) to support conservation of wild populations in Oman","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["royal zoological society of scotland"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/12; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-12","description":"The Nubian ibex (Capra nubiana) is a desert-adapted ungulate, and the remaining free-roaming populations within Oman are small and fragmented. The appropriateness of captive insurance populations for reinforcing existing, or establishing new, wild populations remains uncertain for Oman due to uncertainties regarding taxonomy and genetic provenance. For effective management of this Vulnerable species, it is essential to assess the genetic relationships between the wild and captive animals, and investigate hybridisation with domestic goats (Capra hircus). To facilitate this, we developed genetic resources for Nubian ibex using double digest restriction-associated DNA, identifying 32,461 SNPs which will be invaluable for future development of marker systems to assess wild populations using low-quality DNA from non-invasive sampling. After applying stringent filters, we used 5775 high quality SNPs, to assess genetic structure, gene flow and divergence between wild and captive populations of Nubian ibex. We detected hybridisation within captivity between Nubian ibex and goats, which will require careful attention in future from the captive management authorities and recommend that genetic assessment of captive individuals is routinely used to evaluate their suitability for reintroduction or reinforcement programs. Substantial population structure and significant genetic differentiation was found between wild and captive individuals (FST = 0.540). Our results support a previous mitochondrial study, showing a divergence between the wild Nubian ibex in Oman and those in captivity. These data support the need for further research into Nubian ibex taxonomy to determine whether this species is at greater conservation risk than currently known.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB54683"],"identifiers":[{"scheme":"BioProject","value":"PRJEB54683"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB54683","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb54683:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB54683","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb55112","name":"Soil Metagenomics in jeddah, Saudi Arabia","displayTitle":"Soil Metagenomics in jeddah, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["aala abulfaraj"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/05/10; operational lifecycle is not asserted.","statusEvidenceDate":"2023-05-10","description":"The metagenomic whole genome shotgun sequencing approach was used to characterize antibiotic resistance genes (ARGs) of the rhizobiomes of Moringa oleifera and surrounding soil microbiomes","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB55112"],"identifiers":[{"scheme":"BioProject","value":"PRJEB55112"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB55112","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb55112:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB55112","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb57325","name":"The prevalence of multidrug resistance Enterobacteriaceae among neonates at Farwaniya hospital in Kuwait","displayTitle":"The prevalence of multidrug resistance Enterobacteriaceae among neonates at Farwaniya hospital in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["hussain safar"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/11/15; operational lifecycle is not asserted.","statusEvidenceDate":"2022-11-15","description":"The overall aim of the study was to evaluate the prevalence of drug-resistant Enterobacteriaceae in the neonatal population and their mothers in Farwaniya hospital in Kuwait. A secondary aim was to evaluate various de-novo assembly and correction tools on the identification of genome characterization, drug resistance, and virulence factors of clinical isolates using ONT sequencing reads","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB57325"],"identifiers":[{"scheme":"BioProject","value":"PRJEB57325"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB57325","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb57325:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB57325","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb57558","name":"Whole‐Exome Sequencing of a Saudi Epilepsy Cohort Reveals Association Signals in Known and Potentially Novel Loci","displayTitle":"Whole‐Exome Sequencing of a Saudi Epilepsy Cohort Reveals Association Signals in Known and Potentially Novel Loci","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["iau cm"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/12/07; operational lifecycle is not asserted.","statusEvidenceDate":"2022-12-07","description":"Background: Epilepsy, a serious chronic neurological condition effecting up to 100 million people globally, has clear genetic underpinnings including common and rare variants. In Saudi Arabia the prevalence of epilepsy is high and caused mainly by perinatal and genetic factors. No whole-exome sequencing (WES) studies have been performed to date in Saudi Arabian Epilepsy cohorts. This offers a unique opportunity for the discovery of rare genetic variants impacting this disease as there is a high rate of consanguinity amongst large tribal pedigrees. Results: We performed WES on 144 individuals diagnosed with epilepsy, to interrogate known Epilepsy related genes for known and functional novel variants. We also used an American College of Medical Genetics (ACMG) guideline based variant prioritization approach in an attempt to discover putative causative variants. We identified a 32 potentially causative pathogenic variants across 30 different genes in 44/144 (30%) of these Saudi Epilepsy individuals. We also identified 232 variants of unknown significance (VUS) across 101 different genes in 133/144 (92%) subjects. Strong enrichment of variants of likely pathogenicity were observed in previously described epilepsy-associated loci and a number of putative pathogenic variants in novel loci were also observed.  Conclusion: Several putative pathogenic variants known to be epilepsy-related loci were identified for the first time in our population, in addition to several potential new loci which may be prioritized for further investigation.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB57558"],"identifiers":[{"scheme":"BioProject","value":"PRJEB57558"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB57558","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb57558:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB57558","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb58991","name":"Whole‐Exome Sequencing analyses of Saudi Stroke","displayTitle":"Whole‐Exome Sequencing analyses of Saudi Stroke","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["iau cm"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/01/15; operational lifecycle is not asserted.","statusEvidenceDate":"2025-01-15","description":"Introduction: Ischemic stroke (IS) represents a significant societal burden across the globe. Rare high penetrant monogenic variants and less pathogenic common single nucleotide polymorphisms (SNPs) have been described with risk of disease. Consanguineous populations from Saudi Arabia offer a greater opportunity to detect rare high penetrant mutations enriched in tribal populations.  Methods: We performed WES on 387 IS subjects from Saudi Arabian hospital networks with > 20,230 controls from the Saudi Human Genome Project.  Results: We prioritized screening of variants from 177 a priori loci derived from knowledge-driven curation of monogenic and genome-wide association studies of stroke. We observed 8 genes with a significant association under autosomal dominant and recessive modelling which included IVD, KCNE2, KCNK3, FOXF2, HBB, MGAT2, FOXC1 and CD59. Stroke subjects with modified Rankin Scale (mRSs) above 3 were found to carry greater cumulative genetic risk from rare variants in stroke genes (standardized PRS mean>0), compared to the population average (standardized PRS mean=0). However. patients with mRS of 3 or lower had lower cumulative genetic risk from rare variants in stroke genes (OR (95%CI) = 1.79 (1.29 – 2.49), p=0.0005), with the means of standardized PRS at or lower than 0.  Conclusion: Determining the potential mRS cutoffs to use for clinical significance within a highly consanguineous population like that in Saudi Arabia may yield translational value, such as risk stratification, especially with the additional of common and rare variants to evolving PRS from ongoing stroke genome-wide association studies.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB58991"],"identifiers":[{"scheme":"BioProject","value":"PRJEB58991"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB58991","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb58991:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB58991","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb59227","name":"Whole‐Exome Sequencing Analyses in a Saudi Ischemic Stroke Cohort Reveal Association Signals, and shows Polygenic Risk Scores are related to modified Rankin Scale Risk","displayTitle":"Whole‐Exome Sequencing Analyses in a Saudi Ischemic Stroke Cohort Reveal Association Signals, and shows Polygenic Risk Scores are related to modified Rankin Scale Risk","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Homo sapiens","leadOrganizations":["European Bioinformatics Institute"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/01/28; operational lifecycle is not asserted.","statusEvidenceDate":"2023-01-28","description":"Ischemic stroke (IS) represents a significant societal burden across the globe. Rare high penetrant monogenic variants and less pathogenic common single nucleotide polymorphisms (SNPs) have been described with risk of disease. Consanguineous populations from Saudi Arabia offer a greater opportunity to detect rare high penetrant mutations enriched in tribal populations.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB59227"],"identifiers":[{"scheme":"BioProject","value":"PRJEB59227"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB59227","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb59227:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB59227","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb60942","name":"WGS of HA-MRSA isolates from Saudi Arabia done to characterize strain's genotypes, AMR and virulence genes, transposons and possible phylodynamics.","displayTitle":"WGS of HA-MRSA isolates from Saudi Arabia done to characterize strain's genotypes, AMR and virulence genes, transposons and possible phylodynamics.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["KAIMRC"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/04/14; operational lifecycle is not asserted.","statusEvidenceDate":"2023-04-14","description":"We sequenced around 194 MRSA isolates from a hospital in Jeddah, Saudi Arabia. In the study We identified their genotypes, AMR and virulence genes as well as transposons and plasmids. We found interesting and novel patterns among AMR genes and novel mutations. We hypothesize that a particular novel clone is specific to this region which is circulating among patients in the hospital wards.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB60942"],"identifiers":[{"scheme":"BioProject","value":"PRJEB60942"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB60942","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb60942:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB60942","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb62870","name":"Soil Metagenomics (Abutilon plant)","displayTitle":"Soil Metagenomics (Abutilon plant)","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["aala abulfaraj"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/06/09; operational lifecycle is not asserted.","statusEvidenceDate":"2023-06-09","description":"Soil Metagenomics in Abutilon sp.  plants growing around Jeddah, Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB62870"],"identifiers":[{"scheme":"BioProject","value":"PRJEB62870"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB62870","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb62870:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB62870","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb64160","name":"Fully Resolved Assembly and Comparative Genomics of Fusarium proliferatum DSM106835","displayTitle":"Fully Resolved Assembly and Comparative Genomics of Fusarium proliferatum DSM106835","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["united arab emirates university"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/07/25; operational lifecycle is not asserted.","statusEvidenceDate":"2023-07-25","description":"The study aimed to sequence and assemble the high-resolution genome of Fusarium proliferatum (Fp) DSM106835, the fungal pathogen responsible for sudden decline syndrome (SDS) in date palms in the United Arab Emirates (UAE). By generating a high-quality reference genome, the researchers sought to understand the molecular mechanisms of plant-pathogen interactions and identify genes and metabolites associated with pathogenicity. The study also aimed to elucidate the genetic factors responsible for resistance to SDS. This research is highly relevant as SDS has been causing significant economic losses in the date palm industry in the UAE and other Middle Eastern countries. The lack of molecular information about F. proliferatum and SDS has hindered the development of effective genetic control strategies. By shedding light on the genome of Fp DSM106835 and identifying virulence-related genes unique to this strain, the study provides valuable insights that can contribute to the development of molecular solutions for SDS management, such as RNAi or CRISPR Cas-9 gene editing. Ultimately, this research has practical implications for improving date palm cultivation and safeguarding the economic viability of the date palm industry in the UAE and beyond.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJEB64160"],"identifiers":[{"scheme":"BioProject","value":"PRJEB64160"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB64160","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb64160:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB64160","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb64197","name":"Study about the dissemination of staphylococci in the retails shops and hospital with focus on Staphylococcus aureus.","displayTitle":"Study about the dissemination of staphylococci in the retails shops and hospital with focus on Staphylococcus aureus.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["computational bioscience research center"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/07/16; operational lifecycle is not asserted.","statusEvidenceDate":"2023-07-16","description":"Staphylococci, particularly Methicillin-sensitive Staphylococcus aureus (MSSA), and Methicillin-resistant Staphylococcus aureus (MRSA) are significant contributors to serious healthcare-associated infections (HAIs). Lately, the genetic differences between HA-MRSA, CA-MRSA, and LA-MRSA have shifted, and shared clones of MSSA and MRSA are found in humans, livestock, as well as retail meat. This study aimed to compare the MRSA isolates from humans and meat to understand the genetic characteristics and similarities between the circulating clones across both groups. A total of 250 samples of meat (camel, beef, chicken, fish, and lamb) were collected from different retailers in Riyadh, Saudi Arabia. Positive Staphylococci isolates were subjected to molecular typing, and 53 S. aureus isolates were identified out of which 79% (n=42) were MSSA and 21% (n=11) were MRSA. In comparison, 80 molecularly confirmed clinical MRSA isolates were obtained from patients in the same city. The most common S. aureus clone in patients and retail meat was clonal complex (CC5), also nearly half of the MRSA isolated from meat and patients belonged to CC5. While there was no MRSA found in beef, camel meat had the highest prevalence of MRSA ST6-t2450 contamination. The other two clones, CC97 and CC361, were the second-most prevalent clones in meat and were relatively common among patients. Novel S. aureus lineages were sequenced and characterized for the first time ST8109 from meat and ST8110 and ST8111 from patients. Further investigation on S. aureus considering its dissemination, genetic characterization, antibiotic resistance, and overall impact on food intended for human consumption and its effect on human health is needed. A structured One Health initiative is also needed locally to estimate and face the continuous growth of MRSA and other pathogens in the population.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB64197"],"identifiers":[{"scheme":"BioProject","value":"PRJEB64197"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB64197","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb64197:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB64197","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb6491","name":"Isolation of a Salmonella Kentucky ST-198 strain and its H2S-negative variant from the same patient.","displayTitle":"Isolation of a Salmonella Kentucky ST-198 strain and its H2S-negative variant from the same patient.","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["VBC"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/08/15; operational lifecycle is not asserted.","statusEvidenceDate":"2014-08-15","description":"Hydrogen sulfide production is a characteristic feature in the laboratory identification of Salmonella species. Ciprofloxacin-resistant Salmonella Kentucky ST-198 arose in Egypt and spread worldwide. We isolated a H2S-negative and a H2S- positive variants of the strain from the sacral wound and stool respectively of the same patient in Kuwait. Whole genome sequencing of the isolates showed that the H2S-negative variant differed in having an insertion of a base in the gene encoding  molybdenum cofactor biosynthesis protein c leading to a frame-shift mutation.  This gene is linked to the thiosulfate reductase gene involved in the production of H2S. This seems to be a novel mechanism in H2S-negative variant generation in salmonella.  Lack of production of H2S can potentially lead to failure of detection of salmonella in the laboratory.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB6491"],"identifiers":[{"scheme":"BioProject","value":"PRJEB6491"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB6491","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb6491:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB6491","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb65611","name":"In Saudi Arabia, those who have been diagnosed with CRC at a late stage were included in this study to investigate the gut microbial profile and its association to diet. This study also examines the risk factors for CRC in Saudi Arabia, focusing on diet quality, consumption of fruits and vegetables, and fat intake (total fat, saturated fat, monounsaturated fat, polyunsaturated fat, fat from plant food sources, and fat from animal sources). It also examines the role of dysbiosis in the gut microbiota and its potential link to the development of CRC.","displayTitle":"In Saudi Arabia, those who have been diagnosed with CRC at a late stage were included in this study to investigate the gut microbial profile and its association to diet.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["areej alhhazmi"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/31; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-31","description":"Colorectal cancer (CRC) is a significant global health concern. Studies on the intestinal microbiota have demonstrated the important role that gut bacteria play in many cancers, particularly CRC. This study aims to assess the risk factors for CRC, particularly, diet quality and fat intake, as well as the role of dysbiosis in the gut microbiota and its potential link to the development of CRC in Saudi Arabia.  In this study, a cohort of 25 CRC patients diagnosed at late stage III and IV were enrolled. The diet quality and fat intake of participants included in this study was assessed using a modified version of the short-form food frequency questionnaire (SFFFQ) and a modified version of a food frequency questionnaire (FFQ) previously employed, respectively. To investigate the variety of fecal bacteria, 16S ribosomal RNA gene sequencing was employed, followed by clustering analysis. Simple linear regression was used to assess the association between diet quality and fat intake with the most abundant bacteria in CRC In order to find enriched pathways among the two groups, the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Cluster of Ortholog Genes (COG) functional annotation were utilized.  The findings showed the two groups' fecal microbiotas varied significantly in beta diversity. According to genera abundance of CRC compared to healthy participants, CRC was found to have enriched populations of Streptococcus, Lactobacillus, Klebsiella, Intestinibacter, Ralstonia, Alistipes, Pseudomonas, Peptostreptococcus, Faecalibaculum, Dubosiella, Erysipelatoclostridium, Enterobacter, Sellimonas, Lachnoclostridium, Eubacterium, Clostridium innocuum group, Aerococcus, Family_XIII_AD3001 Group, and Veillonella (p<0.05). Only Alistipes sp. was found to be positively linked to poor diet quality in CRC patients (p= 0.029; R-square= 0.47). According to the function and pathway prediction, the CRC group was linked to amino acid transport, signaling and metabolism, membrane biogenesis, DNA replication and mismatch repair system, and protease activity. These results suggested that the imbalance of intestinal bacteria and the elevated level of the predicated functions and pathways may contribute to the development of advanced CRC tumors. Further research is warranted to elucidate the exact role of the gut microbiome in colorectal cancer and its potential implications for diagnostic, prevention and treatment strategies.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB65611"],"identifiers":[{"scheme":"BioProject","value":"PRJEB65611"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB65611","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb65611:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB65611","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb66182","name":"Evolution and epidemiology of ESKAPE pathogens in the Kingdom of Saudi Arabia","displayTitle":"Evolution and epidemiology of ESKAPE pathogens in the Kingdom of Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["king abdullah university of science and technology"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/09/18; operational lifecycle is not asserted.","statusEvidenceDate":"2023-09-18","description":"This study delves into the dynamic landscape of ESKAPE pathogens within healthcare settings in the Kingdom of Saudi Arabia. ESKAPE, an acronym encompassing Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species, collectively represent a formidable challenge due to their capacity to \"escape\" antibiotic treatments. Our research aims to unravel the genomic diversity of these pathogens, shedding light on their evolving antimicrobial resistance mechanisms and virulence traits. By employing advanced genomic sequencing and bioinformatics tools, we scrutinize the genetic makeup of ESKAPE strains isolated from Saudi Arabian hospitals. Through comprehensive genomic analysis, we seek to elucidate the intricate interplay between genetic adaptation and the epidemiology of these pathogens, particularly focusing on the factors driving their persistence and spread within healthcare environments. This investigation holds the promise of informing infection control strategies and facilitating the development of targeted therapies to combat ESKAPE pathogens, thereby safeguarding public health in the Kingdom of Saudi Arabia and beyond.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB66182"],"identifiers":[{"scheme":"BioProject","value":"PRJEB66182"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB66182","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb66182:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB66182","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb66318","name":"signatures of selection on dromedary genome","displayTitle":"signatures of selection on dromedary genome","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait university"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/12/27; operational lifecycle is not asserted.","statusEvidenceDate":"2023-12-27","description":"Dromedary camels are domestic species characterized with various adaptive traits associated with their environmental conditions. The genome of this well-adapted species was manly investigated for genetic diversity with minimal efforts to determine the genetic regions and haplotypes under selection. Such elements are considered as valuable sources to be conserved to maintain dromedaries’ adaptabilities. Here, we have analyzed the whole genome sequence of 40 dromedary camel samples from different populations covering the different geographical locations on the Arabian Peninsula. De-correlated composite of multiple signals (DCMS) approach was used to detect candidate regions with signatures of selection upon combining four intra-population analyses (Tajima’s D index, nucleotide diversity (pi), integrated haplotype score (iHS), and number of segregating sites by length (nSL)). A total of 36 candidate regions harboring 87 genes were defined to be under positive selection. These regions overlap with 185 haplotype blocks encompassing 1340 haplotypes, in which 30 (~2%) are considered as fixed haplotypes with frequency ≥ 0.9. The defined candidate genes are associated with different biological process related to adaptive physiology of dromedaries; neurological pathways and brain development, musculoskeletal development and interaction, fertility, fat distribution and energy expenditure, immunity, visual development, and kidney physiology. The outputs of this study will pave the way for further investigations at the whole genome level to further understand the evolutionary pressures shaping the dromedary genome. Such patterns will help in developing the breeding system of dromedaries to conserve these genetic elements and improve their productivity.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB66318"],"identifiers":[{"scheme":"BioProject","value":"PRJEB66318"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB66318","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb66318:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB66318","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb66378","name":"Detection of a novel genotype of Chlamydia buteonis in falcons from the Emirates","displayTitle":"Detection of a novel genotype of Chlamydia buteonis in falcons from the Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["ANSES"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/11; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-11","description":"Chlamydiaceae are a family of obligate intracellular bacterial pathogens that affect both humans and animals. Recently, a new species named Chlamydia (C.) buteonis was isolated from hawks. In this study, we aimed to investigate the prevalence of Chlamydiaceae in 60 falcons that underwent a routine health check at a specialized clinic in Dubai, United Arab Emirates. Using real-time PCR, we analyzed cloacal and tracheal swabs from these birds and found that 39 of them tested positive for Chlamydiaceae. Subsequent real-time PCR assays specific for C. psittaci, C. abortus, C. avium, and C. gallinacea yielded negative results, while testing positive for C. buteonis. Analysis of ompA and MLST sequences indicated a highly conserved group of strains within this set of samples, but with sequences distinct from the RSHA reference strains and other C. buteonis strains isolated from hawks in the United States. Two strains were further isolated by cell culture and sequenced using whole-genome sequencing, confirming the clustering of these falcon strains within the C. buteonis species, but in a separate clade from the previously identified hawk strains. We also developed a SNP-based HRM assay to distinguish between these different genotypes. Overall, our findings suggest a high prevalence of C. buteonis in falcons in Dubai and highlight the importance of monitoring this pathogen in birds of prey, which may pose a risk to both animal and human health.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJEB66378"],"identifiers":[{"scheme":"BioProject","value":"PRJEB66378"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB66378","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb66378:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB66378","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb67314","name":"dromedary samples from the Southeast Arabian Peninsula in Oman; 10 from Muscat, 14 from Al-Batinah, and 5 from Al-Sharqiya, were investigated to assess their genetic relationship and to define candidate signatures of positive selection.","displayTitle":"dromedary samples from the Southeast Arabian Peninsula in Oman; 10 from Muscat, 14 from Al-Batinah, and 5 from Al-Sharqiya, were investigated to assess their genetic…","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["mohammed al abri"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/11/28; operational lifecycle is not asserted.","statusEvidenceDate":"2023-11-28","description":"Dromedary camels (Camelus dromedarius) are members of the Camelini tribe within the Camelidae family. They are distributed throughout North Africa, the Arabian Peninsula and Southeast Asia. This domestic species is characterized by its superior adaptability to the harsh desert environment. In this study, whole autosomal data of 29 dromedary samples from the Southeast Arabian Peninsula in Oman; 10 from Muscat, 14 from Al-Batinah, and 5 from Al-Sharqiya, were investigated to assess their genetic relationship and to define candidate signatures of positive selection. A minimal genetic distinction that separates Muscat dromedaries from the other two populations was observed, with a degree of genetic admixture between them. Using the de-correlated composite of multiple signals (DCMS) approach, a total of 47 candidate regions within the autosomes of these dromedary populations were defined with signatures of positive selection. These candidate regions harbor a total of 154 genes that are mainly associated with functional categories related to immune response, lipid metabolism and energy expenditure, optical and auditory functions, and long-term memory. Different functional genomic variants were called on the candidate regions and respective genes that warrant further investigation to find possible association with the different favorable phenotypes in dromedaries. The output of this study paves the way for further research efforts aimed at defining markers for use in genomic breeding programs, with the goal of conserving the species and enhancing its productivity.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB67314"],"identifiers":[{"scheme":"BioProject","value":"PRJEB67314"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB67314","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb67314:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB67314","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb67677","name":"First report of mcr-1 in Gulf region and a molecular description of the isolates and plasmids related to the gene","displayTitle":"First report of mcr-1 in Gulf region and a molecular description of the isolates and plasmids related to the gene","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Erasmus University Medical Center"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/01/02; operational lifecycle is not asserted.","statusEvidenceDate":"2024-01-02","description":"To determine the  phenotypic and genetic epidemiology of plasmid-mediated colistin resistance (mcr) in Escherichia coli obtained from camels in the Gulf Region (specifically the United Arab Emirates). Fifty fecal samples were collected from 50 camels at a Dubai-based farm in the UAE and colistin-resistant Gram-negative bacilli obtained using selective culture. A multiplex mcr-gene PCR, plasmid profiling and WGS were subsequently performed.  Eleven of 50 camel feces (22%) yielded colonies positive for the mcr-1 gene. No other mcr-gene  variant was detected. After plasmid profiling using gel electrophoresis and WGS, a selection of 9 Escherichia coli isolates from 8 camels were available for analysis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJEB67677"],"identifiers":[{"scheme":"BioProject","value":"PRJEB67677"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB67677","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb67677:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB67677","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb67737","name":"Unraveling the Population Structure of Salmonella Minnesota Strains in Food Retail Outlets in the Kingdom of Saudi Arabia","displayTitle":"Unraveling the Population Structure of Salmonella Minnesota Strains in Food Retail Outlets in the Kingdom of Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["king abdullah university of science and technology"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/25; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-25","description":"This comprehensive study aims to elucidate the intricate population structure of Salmonella Minnesota strains within the food retail landscape of the Kingdom of Saudi Arabia. By scrutinizing the genetic diversity of these strains, our research seeks to provide insights into the associated health risks and, in turn, contribute to the advancement of robust food safety protocols in the region.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB67737"],"identifiers":[{"scheme":"BioProject","value":"PRJEB67737"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB67737","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb67737:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB67737","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb69284","name":"Utilizing the COVID-19 pandemic to examine mass gatherings in the emergence of antimicrobial resistance: a wastewater-based surveillance in Saudi Arabia from 2020 to 2022","displayTitle":"Utilizing the COVID-19 pandemic to examine mass gatherings in the emergence of antimicrobial resistance: a wastewater-based surveillance in Saudi Arabia from 2020 to 2022","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["WDRC KAUST"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/06/14; operational lifecycle is not asserted.","statusEvidenceDate":"2025-06-14","description":"Utilizing the COVID-19 pandemic as an opportunity to examine the role of mass gatherings in the emergence of antimicrobial resistance: a wastewater-based surveillance in Saudi Arabia from 2020 to 2022.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB69284"],"identifiers":[{"scheme":"BioProject","value":"PRJEB69284"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB69284","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb69284:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB69284","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb6929","name":"Removal of bacterial contaminants and antibiotic resistance genes by conventional wastewater treatment processes in Saudi Arabia: Is the treated wastewater safe to reuse for agricultural irrigation?","displayTitle":"Removal of bacterial contaminants and antibiotic resistance genes by conventional wastewater treatment processes in Saudi Arabia: Is the treated wastewater safe to reuse for…","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["WDRC KAUST"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/02/18; operational lifecycle is not asserted.","statusEvidenceDate":"2015-02-18","description":"This study aims to assess the removal efficiency of microbial contaminants in a local wastewater treatment plant over the duration of one year, and to assess the microbial risk associated with reusing treated wastewater in agricultural irrigation. The treatment process achieved 3.5 logs removal of heterotrophic bacteria and up to 3.5 logs removal of fecal coliforms. The final chlorinated effluent had 1.8 x 102 MPN/100 mL of fecal coliforms and fulfils the required quality for restricted irrigation. 16S rRNA gene-based high-throughput sequencing showed that several genera associated with opportunistic pathogens (e.g. Acinetobacter, Aeromonas, Arcobacter, Legionella, Mycobacterium, Neisseria, Pseudomonas and Streptococcus) were detected at relative abundance ranging from 0.014 to 21 % of the total microbial community in the influent. Among them, Pseudomonas spp. had the highest approximated cell number in the influent but decreased to less than 30 cells/100 mL in both types of effluent. A culture-based approach further revealed that Pseudomonas aeruginosa was mainly found in the influent and non-chlorinated effluent but was replaced by other Pseudomonas spp. in the chlorinated effluent. Aeromonas hydrophila could still be recovered in the chlorinated effluent. Quantitative microbial risk assessment (QMRA) determined that only chlorinated effluent should be permitted for use in agricultural irrigation as it achieved an acceptable annual microbial risk lower than 10-4 arising from both P. aeruginosa and A. hydrophila. However, the proportion of bacterial isolates resistant to  6 types of antibiotics increased from 3.8% in the influent to 6.9% in the chlorinated effluent. Examples of these antibiotic-resistant isolates in the chlorinated effluent include Enterococcus and Enterobacter spp. Besides the presence of antibiotic-resistant bacterial isolates, tetracycline resistance genes tetO, tetQ, tetW, tetH, tetZ were also present at an average 2.5 x 102, 1.6 x 102, 4.4 x 102, 1.6 x 101 and 5.5 x 103 copies per mL of chlorinated effluent. Our study highlighted that potential risks associated with the reuse of treated wastewater arise not only from conventional fecal indicators or known pathogens, but also from antibiotic-resistant bacteria and genes.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB6929"],"identifiers":[{"scheme":"BioProject","value":"PRJEB6929"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB6929","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb6929:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB6929","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb70279","name":"Genomic insights into the diversity, virulence, and resistance of Group B Streptococcus Clinical isolates from Saudi Arabia","displayTitle":"Genomic insights into the diversity, virulence, and resistance of Group B Streptococcus Clinical isolates from Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Saudi University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/04/11; operational lifecycle is not asserted.","statusEvidenceDate":"2024-04-11","description":"Detailed assessment of the population structure of Group B Streptococcus (GBS) among adults is still lacking in Saudi Arabia. Genome sequencing of a representative collection of GBS isolates (n = 89) from colonized and infected adults revealed high genetic diversity, represented by 28 sequence types (STs) and nine distinct serotypes, including uncommon serotypes VII and VIII. The majority of STs (n = 76) belonged to the human-associated clonal complexes (CCs) CC1 (33.71%), CC19 (25.84%), CC17 (11.24%), CC10/CC12 (7.87%), and CC452 (6.74%). Major CCs exhibited intra-lineage serotype diversity, except for hypervirulent CC17, which exclusively expressed serotype III. Virulence profiling revealed that nearly all isolates (94.38%) carried at least one of the four alpha family protein genes (alphaC, alp1, alp2/3, and rib), and 92.13% expressed one of the two serine-rich repeat surface proteins Srr1 or Srr2. In addition, most isolates harbored the pilus island (PI)-2a alone (15.73%) or in combination with PI-1 (62.92%), and those carrying PI-2b alone (10.11%) belonged to CC17. Phylogenetic analysis grouped the sequenced isolates according to CCs and further subdivided them along with their serotypes. Overall, isolates across all CC1 phylogenetic clusters expressed Srr1 and carried the PI-1 and PI-2a loci, but differed in genes encoding alpha-like proteins. CC19 clusters were dominated by the III/rib/srr1/PI-1+PI-2a (43.48%, 10/23) and V/alp1/srr1/PI-1+PI-2a (34.78%, 8/23) lineages, whereas most CC17 isolates (90%, 9/10) had the same III/rib/srr2/P1-2b genetic background. Interestingly, genes encoding the CC17-specific adhesins HvgA and Srr2 were detected in phylogenetically distant isolates belonging to ST1212, suggesting that other highly virulent strains might be circulating within the species. In contrast, the spread of resistance to macrolides and/or lincosamides across all major CCs (n = 48) was associated with the acquisition of erm(B) (62.5%, 30/48), erm(A) (27.1%, 13/48), lsa(C) (8.3%, 4/48), and mef(A) (2.1%, 1/48) genes, whereas resistance to tetracycline was largely mediated by the presence of tet(M) (64.18%, 43/67) and tet(O) (20.9%, 14/67) alone or in combination (13.43%, 9/67). Resistance to erythromycin, gentamicin, levofloxacin, and tetracycline was detected in only three ST19 isolates. These findings underscore the necessity for a more rigorous characterization of GBS isolates causing infections.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB70279"],"identifiers":[{"scheme":"BioProject","value":"PRJEB70279"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB70279","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb70279:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB70279","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb70790","name":"NGS-Guided Epidemiological Analysis of Multidrug-Resistant Pseudomonas aeruginosa in Tertiary Hospitals of Jeddah and Riyadh, Saudi Arabia","displayTitle":"NGS-Guided Epidemiological Analysis of Multidrug-Resistant Pseudomonas aeruginosa in Tertiary Hospitals of Jeddah and Riyadh, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/12/02; operational lifecycle is not asserted.","statusEvidenceDate":"2023-12-02","description":"This study aims to contribute precision epidemiological insights and comprehensive comparisons into the prevalence, resistance genes, virulence factors and genomic diversity of multidrug-resistant P. aeruginosa strains in tertiary hospitals of Jeddah and Riyadh.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB70790"],"identifiers":[{"scheme":"BioProject","value":"PRJEB70790"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB70790","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb70790:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB70790","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb7092","name":"genomic analysis of Coxiella burnetii, strain Cb196_Saudi_Arabia","displayTitle":"genomic analysis of Coxiella burnetii, strain Cb196_Saudi_Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Coxiella burnetii","leadOrganizations":["IHU - Mediterranee Infection"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/09/27; operational lifecycle is not asserted.","statusEvidenceDate":"2014-09-27","description":"the genomic sequence of this strain will be analyzed in detail and used for the study of pangenome of Coxiella burnetii","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Other"],"accessionIds":["PRJEB7092"],"identifiers":[{"scheme":"BioProject","value":"PRJEB7092"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB7092","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb7092:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB7092","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb71150","name":"Population structure of invasive MRSA in Saudi Arabia hospitals with genomic epidemiology approaches","displayTitle":"Population structure of invasive MRSA in Saudi Arabia hospitals with genomic epidemiology approaches","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["king abdullah university of science and technology"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/12/15; operational lifecycle is not asserted.","statusEvidenceDate":"2023-12-15","description":"This project employs advanced genomic epidemiology techniques to understand the population structure of invasive MRSA in hospital settings of Saudi Arabia. Our aim is to analyze the genetic profiles of various MRSA strains to gain insights into their distribution, evolution, and transmission dynamics within healthcare facilities. The findings from this study will be crucial in developing strategies to control and prevent the spread of this pathogen in hospitals, ultimately enhancing patient safety and public health","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB71150"],"identifiers":[{"scheme":"BioProject","value":"PRJEB71150"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB71150","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb71150:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB71150","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb73970","name":"Genotypic and phenotypic variation in Pseudomonas aeruginosa UTIs","displayTitle":"Genotypic and phenotypic variation in Pseudomonas aeruginosa UTIs","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Centre for Genomic Research, Institute of Integrative Biology, University of Liverpool, UK"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/03/12; operational lifecycle is not asserted.","statusEvidenceDate":"2026-03-12","description":"Genotypic and phenotypic variation in Pseudomonas aeruginosa UTIs Abstract: Urinary tract infections (UTIs) are associated with a high burden of morbidity, mortality, and cost. Pseudomonas aeruginosa employs a myriad of virulence factors, including biofilm formation and motility mechanisms, to cause infections including persistent UTIs. P. aeruginosa is highly resistant to antibiotics and the World Health Organization has identified it as a pathogen for which novel antimicrobials are urgently required. Genotypic and phenotypic characterization of P. aeruginosa from UTIs are underreported. In addition, the rise of antimicrobial resistance (AMR) is a cause for concern, particularly in many countries where surveillance is severely lacking. 22 P. aeruginosa UTI isolates were sourced from the United Kingdom (UK) and Kuwait. To establish the phenotypes of UK isolates, growth analysis, biofilm formation assays, motility assays, and antibiotic disc diffusion assays were performed. Whole genome sequencing, antimicrobial susceptibility assays, and in silico detection of AMR-associated genes were conducted on both sets of isolates. In terms of their phenotypic characteristics and genomic composition, the UTI isolates varied. Multiple resistance genes associated with resistance to various classes of antibiotics, such as aminoglycosides, fluoroquinolones, and β-lactams, particularly in isolates from Kuwait. Extreme antibiotic resistance was detected in the isolates obtained from Kuwait, indicating that the country may be an antibiotic resistance hotspot. This study highlights that isolates from UTIs are diverse and can display extremely high resistance. Surveillance in countries such as Kuwait are currently limited and this study suggest the need for greater surveillance.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB73970"],"identifiers":[{"scheme":"BioProject","value":"PRJEB73970"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB73970","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb73970:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB73970","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb73976","name":"Smoking induced Salivary Microbiome Dysbiosis and is correlated with lipid biomarkers","displayTitle":"Smoking induced Salivary Microbiome Dysbiosis and is correlated with lipid biomarkers","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/06/04; operational lifecycle is not asserted.","statusEvidenceDate":"2024-06-04","description":"Background: The oral microbiome plays an essential role in maintaining oral homeostasis and health; smoking significantly affects it, leading to microbial dysbiosis. The study aims to investigate alterations in the oral microbiome composition of smokers in the Qatari population and establish a correlation with lipid biomarkers.  Methods: The oral microbiota was profiled from saliva samples of 200 smokers and 100 non-smokers in the Qatari population, and 16s rRNA V3-V4 region were sequenced using the Illumina MiSeq platform. The operational taxonomic units (OTUs) were clustered using QIIME and the statistical analysis was performed by R.  Results: Non-smokers exhibited a more diverse microbiome, with significant alpha and beta diversity differences between the non-smoker and smoker groups. Smokers had a higher abundance of Firmicutes, Bacteroidota, Actinobacteriota, Patescibacteria, and Proteobactria at the phylum level and of Streptococcus, Prevotella, Veillonella, TM7x, and porphyromonas at the genus level. In contrast, non-smokers had more Bacteroidota, Firmicutes, Proteobacteria, Fusobacteriota, and Patescibacteria at the phylum level, and Prevotella, Streptococcus, Veillonella, Porphromonas, and Neisseria at the genus level. Notably, Streptococcus was significantly positively correlated with LDL and negatively correlated with HDL. Additionally, Streptococcus salivarius, within the genus Streptococcus, was substantially more abundant in smokers.  Conclusion: This study highlights the significant influence of smoking on the composition of the oral microbiome by enriching anaerobic microbes and depleting aerobic microbes. Understanding the impact of smoking on altering the oral microbiome composition and its correlation with chemistry tests is essential for developing targeted interventions and strategies to improve oral health and reduce the risk of diseases.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB73976"],"identifiers":[{"scheme":"BioProject","value":"PRJEB73976"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB73976","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb73976:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB73976","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb75021","name":"Copy number variations on the genome of dromedary camels","displayTitle":"Copy number variations on the genome of dromedary camels","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait university"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/10/01; operational lifecycle is not asserted.","statusEvidenceDate":"2024-10-01","description":"Copy number variants (CNVs) are structural variants within the eukaryotic genome that vary among individuals of a species. These variants have been associated with different phenotypic traits, making them a valuable consideration as markers for designing breeding programmes. In this study, whole genome sequence data of 60 dromedary camel samples originating from the Arabian Peninsula were analyzed to construct a comprehensive dromedary CNV map. Utilizing four CNV callers employing read-depth, split-read and paired-end mapping approaches, a total of 37,519 CNV events (17,847 deletions and 19,672 duplications) were called on the dromedary autosomes. These CNV events were merged into 2,557 regions, categorized as 1,322 losses, 122 gains, and 1,113 “mixed regions” comprising both types . The cumulative size of the CNV regions amounted to 22.5 Mb, covering roughly 1.16% of the dromedary autosomes. Approximately 32% of the defined CNV regions (comprising 60% of the losses, 18% of the gains, and 0.27% of the mixed regions) were found in ≥ 90% of the dromedary samples, classifying them as prevalent regions. Genes with biological functions related to the different adaptive physiologies of dromedary camels, such as fertility, heat stress, musculoskeletal development, and fat metabolism, were overlapping 62% of the defined CNV regions, demonstrating their potential role in dromedaries’ physiology. This study presents the first comprehensive CNV map of dromedary camels and builds on the present knowledge in understanding the genetic structure of this species.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB75021"],"identifiers":[{"scheme":"BioProject","value":"PRJEB75021"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB75021","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb75021:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB75021","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb76653","name":"Targeted-capture of Phoenix dactylifera (date palm) sex-linked and exomic sequences","displayTitle":"Targeted-capture of Phoenix dactylifera (date palm) sex-linked and exomic sequences","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Institut de Recherche pour le Developpement"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/08/14; operational lifecycle is not asserted.","statusEvidenceDate":"2025-08-14","description":"Targeted-capture of Phoenix dactylifera sex-linked (20,000 baits, 120-mers) and exomic sequences (60,000 baits, 90-mers) on one population of Phoenix dactylifera from the United Arab Emirates and one of Kerriodoxa elegans from Thailand.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB76653"],"identifiers":[{"scheme":"BioProject","value":"PRJEB76653"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB76653","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb76653:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB76653","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb79567","name":"Deciphering the Epidemiology and Population Structure of Salmonella enteritidis in Saudi Arabia","displayTitle":"Deciphering the Epidemiology and Population Structure of Salmonella enteritidis in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["king abdullah university of science and technology"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/09/04; operational lifecycle is not asserted.","statusEvidenceDate":"2024-09-04","description":"Salmonella enteritidis is a leading cause of foodborne illness worldwide, with significant public health implications. In this study, we apply whole-genome sequencing combined with advanced bioinformatics analyses to investigate the epidemiology, transmission dynamics, and population structure of Salmonella enteritidis in Saudi Arabia. By analyzing a robust collection of isolates obtained from various sources across the country, we uncover critical insights into the genetic diversity, antimicrobial resistance patterns, and transmission routes of this pathogen.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB79567"],"identifiers":[{"scheme":"BioProject","value":"PRJEB79567"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB79567","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb79567:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB79567","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb81867","name":"A comprehensive study of the population dynamics of Hospital-Acquired MRSA using genomic epidemiology within a healthcare facility in Saudi Arabia","displayTitle":"A comprehensive study of the population dynamics of Hospital-Acquired MRSA using genomic epidemiology within a healthcare facility in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["king abdullah university of science and technology"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/10/31; operational lifecycle is not asserted.","statusEvidenceDate":"2024-10-31","description":"This study focuses on the population dynamics of Hospital-Acquired MRSA within a healthcare facility in Saudi Arabia, using genomic epidemiology to investigate the genetic diversity, transmission patterns, and evolution of MRSA strains. By analyzing the genetic profiles of these bacteria, the research aims to provide insights into their spread and persistence in hospital settings. The findings will contribute to the development of targeted infection control strategies, helping to prevent the transmission of MRSA and improve overall hospital safety and patient care.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB81867"],"identifiers":[{"scheme":"BioProject","value":"PRJEB81867"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB81867","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb81867:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB81867","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb82798","name":"signatures of selection in racing camels","displayTitle":"signatures of selection in racing camels","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait university"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/02/03; operational lifecycle is not asserted.","statusEvidenceDate":"2025-02-03","description":"Racing dromedary camels are widely distributed across the Arabian Peninsula, predominantly concentrating in its northern and southeastern regions. Phenotypically, they are differentiated from other dromedary types, characterized by their smaller body size, longer limbs, reduced hump size, and thinner chest girth. In this study, the whole genome sequences of 34 racing camels were analyzed to assess their genetic relationship with non-racing populations, estimate levels of inbreeding, assess effective population size (Ne), and identify candidate regions with signatures of positive selection. A moderate level of genomic inbreeding was estimated in both racing and non-racing camels (FROH = 0.21), with no significant genetic differentiation observed between the two groups. Ne estimations of both groups indicated a declining trend over the past 5 000 years, with recent Ne slightly lower in racing camels compared to their non-racing counterparts. Signatures of positive selection in the genomes of racing camels were identified through the application of two haplotype-based statistics, namely the integrated haplotype score (iHS) and cross-population extended haplotype homozygosity (Rsb), along with a runs of homozygosity (ROH) analysis. A total of 33 regions under selection were detected via iHS, 19 via Rsb, and 24 through ROH. Candidate regions under selection were found to overlap with genes involved in diverse biological pathways potentially linked to athletic performance, e.g., musculoskeletal development, lipid metabolism, stress response, bone integrity, and endurance. These findings provide a foundation for further exploration of the racing dromedary genome, with the goal of defining variants and haplotypes that might be associated with athletic traits. Such insights could assist the development of genetically informed breeding programmes aimed at developing specialized racing dromedary lines.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB82798"],"identifiers":[{"scheme":"BioProject","value":"PRJEB82798"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB82798","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb82798:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB82798","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb82957","name":"Metabarcoding Analysis of Oral Microbiome during pregnancy","displayTitle":"Metabarcoding Analysis of Oral Microbiome during pregnancy","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Biomedical research center/ Qatar University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/12/06; operational lifecycle is not asserted.","statusEvidenceDate":"2024-12-06","description":"Pregnancy is a dynamic physiological process involving significant hormonal, immune, and metabolic changes to support fetal growth and development. This study investigates the changes in salivary microbiome and biochemical markers from the second to the third trimester of pregnancy. Saliva samples were collected from 45 pregnant women enrolled in the Qatar Birth Cohort study at two time points (second and third trimesters). DNA was extracted and subjected to 16S rRNA gene sequencing using Oxford Nanopore Technology. Microbial diversity and taxonomic analyses were performed, along with correlation analyses between microbial abundance and clinical parameters. Biochemically, significant increases in BMI, pulse rate, HbA1c, LDL, total cholesterol, and triglycerides were observed in the third trimester compared to the second. Microbial diversity analysis revealed significant changes in microbial richness and composition. Taxonomy analysis showed a significant 3-fold increase in Bacteroidota. Also, a significant decline in Selenomonas and a significant increase in Veillonella, specifically Veillonella dispar and Veillonella atypica, as well as an increase in Granulicatella were observed in the third trimester, along with a significant decrease in Streptococcus sanguinis. Correlation analysis during the second trimester revealed positive associations between BMI, cholesterol, LDL, and Selenomonas, and negative correlations with Streptococcus and Gemella. In the third trimester, BMI was negatively correlated with Campylobacter, glucose levels were negatively correlated with Neisseria, and triglyceride levels were negatively correlated with Prevotella. These findings highlight significant biochemical and microbial shifts during pregnancy, underscoring the importance of monitoring oral health and metabolic changes in pregnant women","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB82957"],"identifiers":[{"scheme":"BioProject","value":"PRJEB82957"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB82957","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb82957:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB82957","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb84127","name":"Genomic Epidemiology and Phenotypic Characterization of Pseudomonas aeruginosa in the country","displayTitle":"Genomic Epidemiology and Phenotypic Characterization of Pseudomonas aeruginosa in the country","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["king abdullah university of science and technology"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/02/06; operational lifecycle is not asserted.","statusEvidenceDate":"2025-02-06","description":"This project explores the genetic diversity and phenotypic traits of Pseudomonas aeruginosa strains in Saudi Arabia. It employs genomic epidemiology to understand the distribution, evolution, and resistance mechanisms of these bacteria. Additionally, the study assesses the phenotypic characteristics of the strains, such as virulence factors and antibiotic resistance profiles, to correlate genetic data with clinical outcomes and environmental adaptations. This comprehensive approach aims to enhance our knowledge of Pseudomonas aeruginosa and improve infection control strategies within the region","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and 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repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB84127","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb84127:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB84127","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb84203","name":"A genomic epidemiological study of an outbreak from a hospital in Riyadh","displayTitle":"A genomic epidemiological study of an outbreak from a hospital in Riyadh","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/01/14; operational lifecycle is not asserted.","statusEvidenceDate":"2025-01-14","description":"In this study, we analyzed the genomes of 23 C. auris isolates from 20 patients in 2019, representing one of the largest recent outbreaks in the Middle East at a hospital in Riyadh. Using a SNP-based phylogenomic tracking analysis combined with hospital clinical records data, we provide evidence that there are multiple introductions of C. auris to Saudi Arabia that resulted in subsequent local nosocomial transmissions within a hospital setting.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB84203"],"identifiers":[{"scheme":"BioProject","value":"PRJEB84203"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB84203","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb84203:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB84203","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb90586","name":"Genomic Analysis of VRE from Hospitalized Patients in Saudi Arabia","displayTitle":"Genomic Analysis of VRE from Hospitalized Patients in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Erasmus University Medical Center"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/06/29; operational lifecycle is not asserted.","statusEvidenceDate":"2025-06-29","description":"Vancomycin-resistant Enterococcus (VRE) was first identified in Saudi Arabia in 1993, and numerous studies have since documented its prevalence across the Kingdom. However, a significant portion of this research has been limited by small sample sizes, often fewer than 50 isolates, and a lack of comprehensive molecular characterization. While a preliminary whole-genome sequencing (WGS) study of 29 isolates revealed novel findings, a larger-scale analysis is necessary to fully understand the evolution of VRE in this region. This study, therefore, aims to address this gap by determining the phenotypic and genotypic resistance profiles, virulence determinants, and sequence types of 75 VRE isolates collected from hospitalized patients in Riyadh, Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB90586"],"identifiers":[{"scheme":"BioProject","value":"PRJEB90586"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB90586","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb90586:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB90586","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb91289","name":"Epidemiological Study to Identify the Most Common Acinetobacter Strains in Saudi Arabia and Assess Their Antibiotic Resistance and Virulence Profile","displayTitle":"Epidemiological Study to Identify the Most Common Acinetobacter Strains in Saudi Arabia and Assess Their Antibiotic Resistance and Virulence Profile","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["king abdullah university of science and technology"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/07/04; operational lifecycle is not asserted.","statusEvidenceDate":"2025-07-04","description":"This study aims to identify the most prevalent Acinetobacter strains circulating in healthcare settings across Saudi Arabia. A total of 798 isolates were collected and analyzed for antibiotic resistance and virulence profiles using phenotypic assays and genomic methods. The results highlight the dominance of multidrug-resistant strains and reveal key virulence factors contributing to pathogenicity. This work provides crucial insight into local Acinetobacter epidemiology and supports the development of targeted infection control strategies.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB91289"],"identifiers":[{"scheme":"BioProject","value":"PRJEB91289"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB91289","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb91289:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB91289","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb93812","name":"Whole genome sequencing of Neisseria gonorrhoeae isolates from Vietnam, 2024","displayTitle":"Whole genome sequencing of Neisseria gonorrhoeae isolates from Vietnam, 2024","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Orebro University Hospital"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/11/30; operational lifecycle is not asserted.","statusEvidenceDate":"2025-11-30","description":"The World Health Organization (WHO) Enhanced Gonococcal Antimicrobial Surveillance Programme (EGASP) was initiated in 2015 in Thailand,1,2 and has now been expanded to include Brazil, Malawi, Cambodia,3,4 Indonesia, The Philippines, South Africa, Thailand,1,2 Uganda, Vietnam,5 and Zimbabwe. Furthermore, Argentina, Côte d'Ivoire, India, and Qatar are in implementation phases. The WHO EGASP uses standardised and quality-assured protocols and in 2023 whole-genome sequencing (WGS), test-of-cure and, extragenital sampling, where feasible, were implemented (https://www.who.int/initiatives/gonococcal-antimicrobial-surveillance-programme). The WHO EGASP-Viet Nam was implemented in the second quarter of 2023 and it is coordinated by the WHO, Geneva, Switzerland; WHO Country Office, Hanoi, Viet Nam; National Hospital of Dermatology and Venereology, Hanoi, Viet Nam; Ho Chi Minh City (HCMC) Hospital of Dermatology and Venereology, HCMC, Viet Nam; Quy Hoa Hospital for Leprosy and Dermatology-Venereology, Quy Hoa, Viet Nam; and the WHO Collaborating Centre for Gonorrhoea and Other Sexually Transmitted Infections (STIs), Örebro, Sweden. Specimens are collected from males with urethral discharge attending the three participating hospitals in Viet Nam. Specimen collection, transportation, culture, antimicrobial resistance (AMR) testing, and preservation of isolates are performed in strict concordance with the WHO EGASP protocols (https://www.who.int/initiatives/gonococcal-antimicrobial-surveillance-programme).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB93812"],"identifiers":[{"scheme":"BioProject","value":"PRJEB93812"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB93812","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb93812:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB93812","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb9501","name":"Assessing the groundwater quality at a Saudi Arabian agricultural site and the occurrence of antibiotic-resistant opportunistic pathogens on irrigated food produce","displayTitle":"Assessing the groundwater quality at a Saudi Arabian agricultural site and the occurrence of antibiotic-resistant opportunistic pathogens on irrigated food produce","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["WDRC KAUST"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/11/21; operational lifecycle is not asserted.","statusEvidenceDate":"2015-11-21","description":"This study monitors the groundwater in wells situated near to agricultural fields of Saudi Arabia. Vegetables irrigated with the groundwater were also assessed for their microbial safety. The amount of total nitrogen exceeded the 15 mg/L permissible for agricultural irrigation in most of the sampled groundwater. Fecal coliforms in density >12 MPN/100 mL were detected in some of the groundwater wells of close proximity to a chicken farm. Coupled with qPCR-based fecal source tracking, monitoring effort showed that groundwater in two of the wells nearest to the chicken farm were relatively more perturbed than the other wells. Anthropogenic contamination resulted in a shift of predominant bacterial phylum within the groundwater microbial communities. Specifically, there was an elevated presence of Proteobacteria but a lower microbial richness in the groundwater perturbed by anthropogenic contamination. Acinetobacter was detected at high relative abundance of up to 48.6% in the total microbial community of groundwater but culture-based analysis did not recover any antibiotic-resistant bacteria and opportunistic pathogens from the groundwater. Although Enterococcus faecalis and Pseudomonas aeruginosa were isolated from the vegetables irrigated with the groundwater, quantitative microbial risk assessment suggests that the annual risk incurred from consumption of these vegetables are within the acceptable limits of 10-4. Our findings highlighted that the groundwater quality at this agricultural site in the western Saudi Arabia was not as pristine as commonly perceived. Despite the poor groundwater quality, there was no significant impairment of food quality arising from the groundwater.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB9501"],"identifiers":[{"scheme":"BioProject","value":"PRJEB9501"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9501","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb9501:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9501","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb9665","name":"Genome Sequence of an Unknown MLST Resistant Strain of Stenotrophomonas maltophilia with Carbapenem Resistance","displayTitle":"Genome Sequence of an Unknown MLST Resistant Strain of Stenotrophomonas maltophilia with Carbapenem Resistance","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/08/21; operational lifecycle is not asserted.","statusEvidenceDate":"2015-08-21","description":"The emergence and spread of multidrug-resistant (MDR) xxx has been regarded as one of the major challenges among health care-associated infections worldwide. Here, we report the draft genome sequence of MDR Stenotrophomonas maltophilia strain isolated in 2014 from Mecca Province, Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB9665"],"identifiers":[{"scheme":"BioProject","value":"PRJEB9665"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9665","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb9665:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9665","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb9726","name":"Genome Sequence of an Unknown MLST Resistant Strain of Stenotrophomonas maltophilia with Carbapenem Resistance","displayTitle":"Genome Sequence of an Unknown MLST Resistant Strain of Stenotrophomonas maltophilia with Carbapenem Resistance","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/08/27; operational lifecycle is not asserted.","statusEvidenceDate":"2015-08-27","description":"The emergence and spread of multidrug-resistant (MDR) has been regarded as one of the major challenges among health care-associated infections worldwide. Here, we report the draft genome sequence of MDR Stenotrophomonas maltophilia strain isolated in 2014 from Mecca Province, Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Other"],"accessionIds":["PRJEB9726"],"identifiers":[{"scheme":"BioProject","value":"PRJEB9726"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9726","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb9726:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9726","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb97998","name":"Comparative genome-wide analysis of Ovis aries of Saudi Arabia highlighting inbreeding and genetic isolation of Najdi sheep breed","displayTitle":"Comparative genome-wide analysis of Ovis aries of Saudi Arabia highlighting inbreeding and genetic isolation of Najdi sheep breed","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["European Bioinformatics Institute"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/02/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-02-10","description":"Population genetics analysis using 50K SNP chip genotyping of three local sheep breeds","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing","Genome"],"accessionIds":["PRJEB97998"],"identifiers":[{"scheme":"BioProject","value":"PRJEB97998"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB97998","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb97998:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB97998","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb9802","name":"Draft genome sequences of Bacillus species from the rhizosphere of the desert plant Rhazya stricta","displayTitle":"Draft genome sequences of Bacillus species from the rhizosphere of the desert plant Rhazya stricta","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Liverpool"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/08/22; operational lifecycle is not asserted.","statusEvidenceDate":"2015-08-22","description":"In order to better understand the ecology and diversity of microbes in the rhizosphere of desert plants we undertook a survey of bacillus species isolated soil around Rhazya stricta plants from the area around Jeddah, in The Kingdom Saudi Arabia.  We have sequenced the genomes of 11 bacillus isolates representing 5 different species.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB9802"],"identifiers":[{"scheme":"BioProject","value":"PRJEB9802"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9802","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb9802:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9802","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjeb9868","name":"In order to better understand the ecology and diversity of microbes in the rhizosphere of desert plants we undertook a survey of bacillus species isolated soil around Rhazya stricta plants from the area around Jeddah, in The Kingdom Saudi Arabia.","displayTitle":"In order to better understand the ecology and diversity of microbes in the rhizosphere of desert plants we undertook a survey of bacillus species isolated soil around Rhazya…","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Multiple records","leadOrganizations":["University of Liverpool"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/09/15; operational lifecycle is not asserted.","statusEvidenceDate":"2015-09-15","description":"In order to better understand the ecology and diversity of microbes in the rhizosphere of desert plants we undertook a survey of bacillus species isolated soil around Rhazya stricta plants from the area around Jeddah, in The Kingdom Saudi Arabia.  We have sequenced the genomes of 11 bacillus isolates representing 5 different species.","scaleSummary":"9 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJEB9868","PRJEB9869","PRJEB9870","PRJEB9871","PRJEB9872","PRJEB9873","PRJEB9874","PRJEB9875","PRJEB9877"],"identifiers":[{"scheme":"BioProject","value":"PRJEB9868"},{"scheme":"BioProject","value":"PRJEB9869"},{"scheme":"BioProject","value":"PRJEB9870"},{"scheme":"BioProject","value":"PRJEB9871"},{"scheme":"BioProject","value":"PRJEB9872"},{"scheme":"BioProject","value":"PRJEB9873"},{"scheme":"BioProject","value":"PRJEB9874"},{"scheme":"BioProject","value":"PRJEB9875"},{"scheme":"BioProject","value":"PRJEB9877"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9868","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb9868:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9868","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb9868:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9869","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb9868:s03","type":"additional record source","rank":3,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9870","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb9868:s04","type":"additional record source","rank":4,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9871","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb9868:s05","type":"additional record source","rank":5,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9872","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb9868:s06","type":"additional record source","rank":6,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9873","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb9868:s07","type":"additional record source","rank":7,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9874","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb9868:s08","type":"additional record source","rank":8,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9875","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjeb9868:s09","type":"additional record source","rank":9,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9877","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":9},{"id":"ncbi-prjeb9876","name":"Draft genome sequences of Bacillus species from the rhizosphere of the desert plant Rhazya stricta","displayTitle":"Draft genome sequences of Bacillus species from the rhizosphere of the desert plant Rhazya stricta","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Liverpool"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/07/16; operational lifecycle is not asserted.","statusEvidenceDate":"2015-07-16","description":"In order to better understand the ecology and diversity of microbes in the rhizosphere of desert plants we undertook a survey of bacillus species isolated soil around Rhazya stricta plants from the area around Jeddah, in The Kingdom Saudi Arabia.  We have sequenced the genomes of 11 bacillus isolates representing 5 different species.  S.E.M. Abo-Aba, Jamal S M Sabir, Mohammed N Baeshen, Mohammed H Z Mutwakil1, Nabih A Baeshen, Linda D’Amore and Neil Hall","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Other"],"accessionIds":["PRJEB9876"],"identifiers":[{"scheme":"BioProject","value":"PRJEB9876"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9876","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjeb9876:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJEB9876","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1004232","name":"Human MCTS1-dependent translation reinitiation  is essential for IFN-g immunity to mycobacteria","displayTitle":"Human MCTS1-dependent translation reinitiation  is essential for IFN-g immunity to mycobacteria","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Laboratory of Jean-Laurent Casanova"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/08/10; operational lifecycle is not asserted.","statusEvidenceDate":"2023-08-10","description":"Human inherited disorders of IFN-g immunity underlie severe mycobacterial diseases. We report X-linked recessive MCTS1 deficiency in men with mycobacterial disease from kindreds of different ancestries (from China, Finland, Iran, and Saudi Arabia). Complete deficiency of this translation re-initiation factor impairs the translation of a subset of proteins, including the cytosolic kinase JAK2 in all cell types tested, including T lymphocytes and phagocytes. JAK2 translation is sufficiently low to impair cellular responses to IL-23 and, to a lesser extent, IL-12, but not other JAK2-dependent cytokines. Defective responses to IL-23 selectively impair the production of IFN-g by innate-like MAIT and gd adaptive T lymphocytes upon mycobacterial challenge. Surprisingly, the lack of MCTS1-dependent translation re-initiation and ribosome recycling seems to be otherwise physiologically redundant in these patients. X-linked recessive human MCTS1 deficiency underlies isolated mycobacterial disease by impairing JAK2 translation in innate-like adaptive T lymphocytes, thereby impairing the IL-23-dependent induction of IFN-g.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1004232"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1004232"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1004232","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1004232:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1004232","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1005941","name":"Raw sequence reads of multi-drug resistant Gram-negative bacteria causing bloodstream infections","displayTitle":"Raw sequence reads of multi-drug resistant Gram-negative bacteria causing bloodstream infections","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/08/16; operational lifecycle is not asserted.","statusEvidenceDate":"2023-08-16","description":"Clinical and microbiological characteristics and molecular epidemiology of multi-drug resistant Gram-negative bacteria causing bloodstream infections in Qatar from 2019-2021","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1005941"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1005941"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1005941","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1005941:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1005941","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1018815","name":"Evolution and epidemiology of ESKAPE pathogens in the Kingdom of Saudi Arabia","displayTitle":"Evolution and epidemiology of ESKAPE pathogens in the Kingdom of Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/09/19; operational lifecycle is not asserted.","statusEvidenceDate":"2023-09-19","description":"This study delves into the dynamic landscape of ESKAPE pathogens within healthcare settings in the Kingdom of Saudi Arabia. ESKAPE, an acronym encompassing Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species, collectively represent a formidable challenge due to their capacity to \"escape\" antibiotic treatments. Our research aims to unravel the genomic diversity of these pathogens, shedding light on their evolving antimicrobial resistance mechanisms and virulence traits. By employing advanced genomic sequencing and bioinformatics tools, we scrutinize the genetic makeup of ESKAPE strains isolated from Saudi Arabian hospitals. Through comprehensive genomic analysis, we seek to elucidate the intricate interplay between genetic adaptation and the epidemiology of these pathogens, particularly focusing on the factors driving their persistence and spread within healthcare environments. This investigation holds the promise of informing infection control strategies and facilitating the development of targeted therapies to combat ESKAPE pathogens, thereby safeguarding public health in the Kingdom of Saudi Arabia and beyond.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1018815"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1018815"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1018815","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1018815:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1018815","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1018879","name":"Dietary assessment of Wadi Ashar reptile community","displayTitle":"Dietary assessment of Wadi Ashar reptile community","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Not stated","leadOrganizations":["BIOPOLIS/CIBIO-InBIO"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/09/19; operational lifecycle is not asserted.","statusEvidenceDate":"2023-09-19","description":"In this work, a non-invasive approach using DNA metabarcoding of faecal pellets was implemented to investigate the diet composition of the reptile community of Wadi Ashar, in AlUla County, north-western Saudi Arabia Kingdom.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1018879"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1018879"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1018879","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1018879:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1018879","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1019650","name":"IGF-1 SNPs in colorectal cancer","displayTitle":"IGF-1 SNPs in colorectal cancer","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/09/21; operational lifecycle is not asserted.","statusEvidenceDate":"2023-09-21","description":"Two single nucleotide polymorphisms rs35767 and rs6214, in the IGF-1 gene have shown an association with circulating levels of IGF-1 and/or risk of cancer, however, these associations were inconsistent. We aimed to determine the circulating levels IGF-1, IGFBP-2, and IGFBP-3 in a sample of CRC patients and control subjects. We also aimed to assess the genotypic and allelic frequencies of SNPs rs35767 and rs6214 and their association with circulating levels of IGF-1 and the risk for CRC in our study cohort.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Variation","Sequencing","Genome"],"accessionIds":["PRJNA1019650"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1019650"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1019650","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1019650:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1019650","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1020744","name":"The LDHC-STAT3 signaling network is a key regulator of long-term breast cancer cell survival.","displayTitle":"The LDHC-STAT3 signaling network is a key regulator of long-term breast cancer cell survival.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Hamad Bin Khalifa University (HBKU)"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/09/25; operational lifecycle is not asserted.","statusEvidenceDate":"2023-09-25","description":"Breast cancer treatment has evolved drastically with the addition of immunotherapy and novel targeted drugs. However, achieving long-term responses with minimal adverse events remains challenging. Cancer testis antigens (CTAs) offer novel opportunities for drug development thanks to their tumor specificity, immunogenicity, pro-tumorigenic functions, and negative prognostic connotations. We previously reported that Lactate dehydrogenase C (LDHC) plays a key role in regulating genomic stability and demonstrated that targeting LDHC significantly improved treatment response to DNA damage response-drugs in breast cancer. Here, we explored the molecular mechanisms associated with LDHC silencing. Transcriptomic analyses identified cell-line dependent differential activation of the pro-survival STAT3 pathway following LDHC depletion. LDHC silenced cells that display STAT3 activation did not demonstrate excess DNA damage or reduced cell survival, and this effect could be reversed by inhibiting STAT 3. Our findings suggest that the LDHC-STAT3 signaling axis is critical for breast tumor cell survival. Hence, targeting LDHC in combination with STAT3 inhibition, in addition to targeting LDHC alone, could provide a novel therapeutic approach with minimal adverse effects.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1020744"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1020744"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1020744","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1020744:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1020744","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1021349","name":"Listeria monocytogenes in Maternity Hospital in Kuwait","displayTitle":"Listeria monocytogenes in Maternity Hospital in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Listeria monocytogenes","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/09/27; operational lifecycle is not asserted.","statusEvidenceDate":"2023-09-27","description":"Listeria monocytogenes (Lm) is a Gram-positive facultative intracellular bacterium that is responsible for a global foodborne pathogen and the leading cause of Listeriosis. Listeriosis can manifest as a self-limiting gastroenteritis in immunocompetent adults, septicemia and an infection of the central nervous system (neurolisteriosis), mainly in elderly and immunocompromised people, and maternal-neonatal (MN) listeriosis in pregnant women. Maternal-neonatal listeriosis is increasingly recognised as one of the infections with the highest fetal and neonatal morbidity, resulting in fetal losses in at least 25% of cases and severe neonatal infections or prematurity in the majority of other cases worldwide and in the Middle East. L. monocytogenes infections are accountable for the highest hospitalization rates among all foodborne pathogens and have also been linked to large outbreaks of human illness worldwide .","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1021349"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1021349"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1021349","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1021349:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1021349","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1022861","name":"Identification of Gut Microbiota Profile Associated with Colo-rectal Cancer in Saudi Population","displayTitle":"Identification of Gut Microbiota Profile Associated with Colo-rectal Cancer in Saudi Population","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Taibah University"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/01; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-01","description":"To profile the microbiome of colorectal cancer and compared to healthy individuals. The samples were fecal samples from Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1022861"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1022861"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1022861","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1022861:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1022861","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1023480","name":"Microbes associated with the gills of crabs","displayTitle":"Microbes associated with the gills of crabs","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/03; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-03","description":"Isolation and characterization of microbes that inhabit the gills of mangrove crabs collected from Thuwal, Saudi Arabia. Long-read genomic sequencing of bacterial isolates.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1023480"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1023480"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1023480","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1023480:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1023480","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1025031","name":"Metagenomic sequencing of Pentidionis agamae","displayTitle":"Metagenomic sequencing of Pentidionis agamae","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Liverpool"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/06; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-06","description":"Metagenomic sequencing of Pentidionis agamae chiggers from Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1025031"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1025031"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1025031","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1025031:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1025031","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1026919","name":"Sheybarah Island South Stromatolites","displayTitle":"Sheybarah Island South Stromatolites","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/11; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-11","description":"Investigate microbial diversity of stromatolite field discovered in Sheybarah island south, Al Wajh, Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1026919"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1026919"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1026919","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1026919:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1026919","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1027484","name":"Plant-associated-rhizomicrobiome Metagenome","displayTitle":"Plant-associated-rhizomicrobiome Metagenome","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"rhizosphere metagenome","leadOrganizations":["Cheikh Anta Diop University"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/12; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-12","description":"In this work, root, rhizosphere and bulk soil samples were collected from plant-dominated ecosystems in six countries in three continents (the Americas, Africa and Asia) with different climatic zones. These included natural saline sites from the Senegal River, forest fallow sites in RD Congo, 11 and 19 year old reclaimed mining sites in South Africa, mining sites in Canada, mangrove sites in Kenya and desert sites in Kuwait. We analyzed and compared the total fungal and arbuscular mycorrhizal communities of these boreal, temperate and tropical ecosystems using Illumina Miseq of the internal transcribed spacer (ITS2) subregions and the nuclear 18S ribosomal small subunit (SSU) rRNA gene.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA1027484"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1027484"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1027484","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1027484:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1027484","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1028866","name":"Soil and rhizosphere microbial communities facing land use perturbations in Saudi Arabia","displayTitle":"Soil and rhizosphere microbial communities facing land use perturbations in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["MNHN"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/17; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-17","description":"Little is known about microbial community resistance and adaptation to disturbances over time. Here we examined, in the little studied hot arid desert ecosystem of Saudi Arabia, the response of microbial interactions on several land uses perturbations. They result from different hydric constrains of flooding-drought successions, either anthropic or natural, which we compared to natural ecosystems.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1028866"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1028866"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1028866","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1028866:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1028866","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1031942","name":"Metagenomic sequencing of Pentidionis agamae from Saudi Arabia","displayTitle":"Metagenomic sequencing of Pentidionis agamae from Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Liverpool"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/25; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-25","description":"We performed metagenomic sequencing on three pools of Pentidionis agamae chiggers from Saudi Arabia to explore the microbiome.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1031942"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1031942"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1031942","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1031942:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1031942","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1032402","name":"Unraveling the Population Structure of Salmonella Minnesota Strains in Food Retail Outlets in the Kingdom of Saudi Arabia","displayTitle":"Unraveling the Population Structure of Salmonella Minnesota Strains in Food Retail Outlets in the Kingdom of Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/10/26; operational lifecycle is not asserted.","statusEvidenceDate":"2023-10-26","description":"This comprehensive study aims to elucidate the intricate population structure of Salmonella Minnesota strains within the food retail landscape of the Kingdom of Saudi Arabia. By scrutinizing the genetic diversity of these strains, our research seeks to provide insights into the associated health risks and, in turn, contribute to the advancement of robust food safety protocols in the region.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1032402"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1032402"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1032402","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1032402:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1032402","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1037340","name":"Revealing human impact on natural ecosystems through soil bacterial DNA sampled from a 1,500-year-old archaeological site","displayTitle":"Revealing human impact on natural ecosystems through soil bacterial DNA sampled from a 1,500-year-old archaeological site","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["CIRAD"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/11/09; operational lifecycle is not asserted.","statusEvidenceDate":"2023-11-09","description":"For millennia, human activities have affected the surrounding natural ecosystems including belowground microorganisms. Their short- and medium-term effects on the diversity and the composition of soil microbial communities are well documented, but their lasting effects remain unknown. When unoccupied for centuries, archaeological sites are appropriate for studying the long-term effects of the past human occupancy on natural ecosystems, including the soil compartment. In this work, the soil chemical and bacterial compositions were compared between the Roman fort of Hegra (Saudi Arabia) abandoned for 1,500 years, and a preserved area located at 120 meters of the southern wall of the Roman fort where no human occupancy was detected. We show that the four centuries of human occupancy has deeply and lastingly modified both the soil chemical and bacterial compositions inside the Roman fort. We also highlight different bacterial putative functions between the two area, notably associated with the human occupancy. Finally, this work shows that the use of soils from archaeological sites cause little disruption and can bring relevant information, at a large scale, during the initial surveys of archaeological sites.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1037340"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1037340"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1037340","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1037340:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1037340","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1043635","name":"Unraveling the Population Structure of Salmonella Minnesota in Food Retail Outlets Across Saudi Arabia","displayTitle":"Unraveling the Population Structure of Salmonella Minnesota in Food Retail Outlets Across Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/11/21; operational lifecycle is not asserted.","statusEvidenceDate":"2023-11-21","description":"This extensive study aims to shed light on the complex population structure of Salmonella Minnesota strains found in the Kingdom of Saudi Arabia's food retail outlets. By exploring the genetic diversity of these strains, our research intends to offer insights into the related health risks and contribute to enhancing food safety standards in the region.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1043635"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1043635"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1043635","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1043635:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1043635","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1043691","name":"Microbiota Profile in Saudi Children with Ulcerative Colitis","displayTitle":"Microbiota Profile in Saudi Children with Ulcerative Colitis","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["CosmosID"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/11/21; operational lifecycle is not asserted.","statusEvidenceDate":"2023-11-21","description":"In view of the emerging condition and lack of information on the role of microbiota in Saudi Arabia, shotgun metagenomic sequencing was used to describe the Microbiota in Saudi Children with Ulcerative Colitis. Microbial dysbiosis was demonstrated in this population and microbiota signature was identified. Results are preliminary and further studies with large sample size are needed.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1043691"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1043691"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1043691","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1043691:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1043691","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1043714","name":"Hospital Microbiome Surveillance in Qatar","displayTitle":"Hospital Microbiome Surveillance in Qatar","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Washington University in St. Louis"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/11/21; operational lifecycle is not asserted.","statusEvidenceDate":"2023-11-21","description":"Longitudinal study of surface bacteria in a newly built hospital. Various medical and nonmedical areas sampled by use of staff as community scientists.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1043714"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1043714"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1043714","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1043714:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1043714","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1044301","name":"Precision Epidemiological Analysis of Multidrug-Resistant Pseudomonas aeruginosa in Tertiary Hospitals of Jeddah and Riyadh, Saudi Arabia","displayTitle":"Precision Epidemiological Analysis of Multidrug-Resistant Pseudomonas aeruginosa in Tertiary Hospitals of Jeddah and Riyadh, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University Science and Technology"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/11/23; operational lifecycle is not asserted.","statusEvidenceDate":"2023-11-23","description":"Identify and compare precision epidemiology of MDR Pseudomonas aeruginosa within two tertiary hospitals in Jeddah and Riyadh city in Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1044301"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1044301"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1044301","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1044301:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1044301","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1044791","name":"RNA sequencing of poultry samples from six different farms of north and south Kuwait.","displayTitle":"RNA sequencing of poultry samples from six different farms of north and south Kuwait.","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/11/24; operational lifecycle is not asserted.","statusEvidenceDate":"2023-11-24","description":"Considering the persistent threat of recurrent outbreaks and the potential emergence of highly pathogenic strains through mutational events, vigilant monitoring of viral diseases in live birds has become imperative in Kuwait. This study employed RNA sequencing as a pivotal component of a comprehensive surveillance strategy, focusing on the detection of viral pathogens, particularly the low pathogenic avian influenza (LPAIV) groups, within local chicken and avian populations. The primary objective was to offer epidemiological insights into the status of LPAIVs, encompassing an assessment of associated risk factors and an analysis of the spatial and temporal distribution of the disease, facilitated by advanced molecular diagnostic methods such as RT-PCR and Next Generation Sequencing (NGS) of RNA from blood, cloacal swab, and tracheal swab samples of poultry. The samples were collected from six different farms located in the northern and southern region of Kuwait. The resulting dataset serves as a valuable resource for researchers, enabling investigations into the diversity of viral communities across various tissues and aiding in the identification of optimal tissue sources for subsequent screening efforts. The availability of such extensive datasets holds significant potential to guide decision-making processes for researchers and policymakers involved in the control and prevention of re-emergent viral pathogens.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1044791"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1044791"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1044791","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1044791:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1044791","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1045653","name":"Middle East respiratory syndrome-related coronavirus Genome sequencing and assembly","displayTitle":"Middle East respiratory syndrome-related coronavirus Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Middle East respiratory syndrome-related coronavirus","leadOrganizations":["King Abdullah International Medical Research Center (KAIMRC)"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/11/27; operational lifecycle is not asserted.","statusEvidenceDate":"2023-11-27","description":"In this study, we performed a comprehensive analysis utilizing whole genome sequencing (WGS) on 44 MERS-CoV isolates obtained from patients in Saudi Arabia between 2015 and 2019.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1045653"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1045653"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1045653","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1045653:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1045653","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1047108","name":"HLA-Based Banking of Human Induced Pluripotent Stem Cells in Saudi Arabia","displayTitle":"HLA-Based Banking of Human Induced Pluripotent Stem Cells in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/11/30; operational lifecycle is not asserted.","statusEvidenceDate":"2023-11-30","description":"We herein describe the establishment of the first two iPS lines from a Saudi donor who is homozygous for the HLA haplotype with the highest frequency in the population and provide maximal coverage.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1047108"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1047108"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1047108","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1047108:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1047108","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1050907","name":"This project employs advanced genomic epidemiology techniques to understand the population structure of invasive MRSA in hospital settings of Saudi Arabia.","displayTitle":"This project employs advanced genomic epidemiology techniques to understand the population structure of invasive MRSA in hospital settings of Saudi Arabia.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Multiple records","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/12/11; operational lifecycle is not asserted.","statusEvidenceDate":"2023-12-11","description":"This project employs advanced genomic epidemiology techniques to understand the population structure of invasive MRSA in hospital settings of Saudi Arabia. Our aim is to analyze the genetic profiles of various MRSA strains to gain insights into their distribution, evolution, and transmission dynamics within healthcare facilities. The findings from this study will be crucial in developing strategies to control and prevent the spread of this pathogen in hospitals, ultimately enhancing patient safety and public health.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1050907","PRJNA1051018"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1050907"},{"scheme":"BioProject","value":"PRJNA1051018"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1050907","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1050907:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1050907","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1050907:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1051018","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1055107","name":"Soil Microbiome of rare and endangered Acacia tree","displayTitle":"Soil Microbiome of rare and endangered Acacia tree","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/12/20; operational lifecycle is not asserted.","statusEvidenceDate":"2023-12-20","description":"Acacia pachyceras is the only tree species endemic to Kuwait. Due to anthropogenic activities and climate change, it has only one surviving specimen protected in the Sabah Al-Nature Reserve. An attempt has been made to characterize its soil metagenome to understand whether these communities contribute towards the general health of this lonely tree. The outcomes will aide in the rehabilitation and revegetation strategy of this desert dweller.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1055107"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1055107"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1055107","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1055107:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1055107","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1057611","name":"Thielaviopsis punctulata strain:UAEU:EES_2112 | cultivar:Barhi Genome sequencing","displayTitle":"Thielaviopsis punctulata strain:UAEU:EES_2112 | cultivar:Barhi Genome sequencing","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Thielaviopsis punctulata","leadOrganizations":["United Arab Emirates University"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/12/27; operational lifecycle is not asserted.","statusEvidenceDate":"2023-12-27","description":"Date palm (Phoenix dactylifera L.) is one of the most important plants grown for its edible fruit. Palm diseases are among the major factors affecting its growth and productivity. In the United Arab Emirates (UAE), the causal agent of black scorch on date palm was found to be Thielaviopsis punctulata. The pathogen was isolated from all tissues of diseased trees affected by the virulent T. punctulata. Depending on the severity of the infection, symptoms included tissue necrosis, wilting, neck bending, death of terminal buds, and eventual plant mortality. This is an improved version of the preexisting fragmented genome of T. punctulata, which poses challenges with functional gene analysis, and an improved assembly is needed. We, therefore, used the Hi C technique to achieve chromosomal-level assembly of the T. punctulata genome. With Chicago and Dovetail Hi C assemblies, we were able to achieve 7scaffolds >2Mb that correspond to 7 chromosomes in T. punctulata.Thielaviopsis_punctulata_UAEU:EES_2112","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1057611"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1057611"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1057611","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1057611:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1057611","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1058874","name":"Mapping the soil microbial diversity in the hyper-arid region of AlUla","displayTitle":"Mapping the soil microbial diversity in the hyper-arid region of AlUla","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["CIRAD"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/12/29; operational lifecycle is not asserted.","statusEvidenceDate":"2023-12-29","description":"This project aims to characterize the physicochemical and the microbial compositions of the hyper-arid soils in the region of AlUla (Saudi Arabia). The Illumina NovaSeq technology was used to identify the diversity of bacteria and fungi in more than 600 soil samples collected within a kilometric grid. ATXJ-22 and ATXJ-23 contain libraries of 16S-V3V4 amplicons (bacteria) ATXJ-24 and ATXJ-25 contain libraries of ITS2 amplicons (fungi)","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1058874"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1058874"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1058874","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1058874:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1058874","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1060910","name":"Thielaviopsis punctulata strain:DSM 102798 | cultivar:Barhi Genome sequencing and assembly","displayTitle":"Thielaviopsis punctulata strain:DSM 102798 | cultivar:Barhi Genome sequencing and assembly","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Thielaviopsis punctulata","leadOrganizations":["United Arab Emirates University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/01/25; operational lifecycle is not asserted.","statusEvidenceDate":"2024-01-25","description":"Date palm (Phoenix dactylifera L.) is one of the most important plants grown for its edible fruit. Palm diseases are among the major factors affecting its growth and productivity. In the United Arab Emirates (UAE), the causal agent of black scorch on date palm was found to be Thielaviopsis punctulata. The pathogen was isolated from all tissues of diseased trees affected by the virulent T. punctulata. Depending on the severity of the infection, symptoms included tissue necrosis, wilting, neck bending, death of terminal buds, and eventual plant mortality. This is an improvement on the preexisting fragmented genome of T. punctulata, which poses challenges with functional gene analysis, and an improved assembly is needed. We, therefore, used the Hi C technique to achieve chromosomal-level assembly of the T. punctulata genome. With Chicago and Dovetail Hi C assemblies, we achieved 7 scaffolds >2Mb that correspond to 7 chromosomes in T. punctulata.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1060910"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1060910"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1060910","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1060910:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1060910","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1063006","name":"Bestiolina similis Genome sequencing and assembly","displayTitle":"Bestiolina similis Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Bestiolina similis","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/01/10; operational lifecycle is not asserted.","statusEvidenceDate":"2024-01-10","description":"Molecular Taxonomy of Calanoid copepods of Chennai coast","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1063006"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1063006"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1063006","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1063006:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1063006","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1064422","name":"MacQueen's bustard (Chlamydotis macqueenii) is a large bird in the bustard family, renowned for its distinctive courtship display and adaptation to arid landscapes.","displayTitle":"MacQueen's bustard (Chlamydotis macqueenii) is a large bird in the bustard family, renowned for its distinctive courtship display and adaptation to arid landscapes.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Chlamydotis macqueenii","leadOrganizations":["Vertebrate Genomes Project","G10K","Katara Biodiversity Genomes Program","Rockefeller Vertebrate Genome Lab","Sidra Medicine"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/02/05; operational lifecycle is not asserted.","statusEvidenceDate":"2024-02-05","description":"MacQueen's bustard (Chlamydotis macqueenii) is a large bird in the bustard family, renowned for its distinctive courtship display and adaptation to arid landscapes. It is native to the desert and steppe regions of Asia, west from the Sinai Peninsula extending across Kazakhstan east to Mongolia. This sample (bChlMac1) is from a female, bred at the Rawdat Al Faras Houbara Breeding Center, in Qatar. Samples were also obtained from the parents (mother bChlMac3 and father bChlMac2). These samples were collected and coordinated by Farooq Omar Al-Ajli (Katara Biodiversity Genomes Program), to create trio-based high-quality assemblies of the maternal and paternal haplotypes for the Vertebrate Genomes Project (VGP) and Qatar Biodiversity Genomes Project (QBGP). Sequencing was done at the Vertebrate Genomes Lab (VGL) at Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. Genome assembly was conducted at Sidra Medicine by Farooq Omar Al-Ajli and Khalid A. Fakhro in collaboration with VGL.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1064422","PRJNA1064423"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1064422"},{"scheme":"BioProject","value":"PRJNA1064423"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1064422","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1064422:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1064422","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1064422:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1064423","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1064424","name":"The domesticated horse (Equus caballus) is a one-toed, hoofed mammal, and one of the most iconic species distinguished by its unique history, diverse breeds, and significant role in human society.","displayTitle":"The domesticated horse (Equus caballus) is a one-toed, hoofed mammal, and one of the most iconic species distinguished by its unique history, diverse breeds, and significant…","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Equus caballus","leadOrganizations":["Vertebrate Genomes Project","G10K","Katara Biodiversity Genomes Program","Rockefeller Vertebrate Genome Lab","Sidra Medicine"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/02/05; operational lifecycle is not asserted.","statusEvidenceDate":"2024-02-05","description":"The domesticated horse (Equus caballus) is a one-toed, hoofed mammal, and one of the most iconic species distinguished by its unique history, diverse breeds, and significant role in human society. This sample (mEquCab1) is from a male Arabian horse bred at Al Shaqab Equestrian Center, in Qatar. Samples were also obtained from the parents (mother mEquCab3 and father mEquCab2). These samples were provided by Farooq Omar Al-Ajli (Katara Biodiversity Genomes Program), to create trio-based high-quality assemblies of the maternal and paternal haplotypes for the Vertebrate Genomes Project (VGP) and Qatar Biodiversity Genomes Project (QBGP). Sequencing was done at the Vertebrate Genomes Lab (VGL) at Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. Genome assembly was conducted at Sidra Medicine by Farooq Omar Al-Ajli and Khalid A. Fakhro in collaboration with VGL.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1064424","PRJNA1064425"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1064424"},{"scheme":"BioProject","value":"PRJNA1064425"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1064424","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1064424:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1064424","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1064424:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1064425","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1064426","name":"The Arabian camel (Camelus dromedarius ) is a one-humped camel species found in the Middle East and North Africa.","displayTitle":"The Arabian camel (Camelus dromedarius ) is a one-humped camel species found in the Middle East and North Africa.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Camelus dromedarius","leadOrganizations":["Vertebrate Genomes Project","G10K","Katara Biodiversity Genomes Program","Rockefeller Vertebrate Genome Lab","Sidra Medicine"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/01/29; operational lifecycle is not asserted.","statusEvidenceDate":"2024-01-29","description":"The Arabian camel (Camelus dromedarius ) is a one-humped camel species found in the Middle East and North Africa. It is remarkable for its adaptations to arid environments and has been integral to human societies in these regions. This sample (mCamDro1) is from a female bred at Mr. Shabat bin Saqar Al-Muraikhi camel breeding farm, in Qatar. The sample was part of a trio (offspring mCamDro1, father mCamDro2 and mother mCamDro3). These samples were collected and coordinated by Farooq Omar Al-Ajli (Katara Biodiversity Genomes Program), to create trio-based high-quality assemblies of the maternal and paternal haplotypes for the Vertebrate Genomes Project (VGP) and Qatar Biodiversity Genomes Project (QBGP). Sequencing was done at the Vertebrate Genomes Lab (VGL) at Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. Genome assembly was conducted at Sidra Medicine by Farooq Omar Al-Ajli and Khalid A. Fakhro in collaboration with VGL.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1064426","PRJNA1064427"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1064426"},{"scheme":"BioProject","value":"PRJNA1064427"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1064426","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1064426:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1064426","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1064426:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1064427","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1065643","name":"AlRub' AlGhali: a study of the Empty Quarter in Saudi Arabia","displayTitle":"AlRub' AlGhali: a study of the Empty Quarter in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/01/17; operational lifecycle is not asserted.","statusEvidenceDate":"2024-01-17","description":"The aims of the study are to characterize the structure and function of the microbiome of the Empty Quarter by collecting environmental samples at multiple time points. Collected samples include soil, plant, water, and biofilm. Extensive metadata characterizing the environmental conditions is also collected. Amplicon and shotgun sequencing approaches will be used to determine the microbial composition of the samples on a molecular level, and Artificial Intelligence and bioinformatics methods will be used to reveal the functions and interactions in the collected samples and relate them to environmental conditions.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1065643"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1065643"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1065643","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1065643:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1065643","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1067840","name":"Homo sapiens Epigenomics","displayTitle":"Homo sapiens Epigenomics","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Kuwait"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/01/23; operational lifecycle is not asserted.","statusEvidenceDate":"2024-01-23","description":"Small RNA sequencing of familial Type 1 Diabetes cohort.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Epigenomics","Sequencing","Genome"],"accessionIds":["PRJNA1067840"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1067840"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1067840","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1067840:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1067840","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1069970","name":"Withania somnifera Genome sequencing","displayTitle":"Withania somnifera Genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Withania somnifera","leadOrganizations":["King Saud University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/01/27; operational lifecycle is not asserted.","statusEvidenceDate":"2024-01-27","description":"DNA-seq data of leaves obtained from Withania somnifera in high hills of Abha, Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1069970"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1069970"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1069970","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1069970:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1069970","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1070879","name":"dromedary camel milk microbiome Raw sequence reads","displayTitle":"dromedary camel milk microbiome Raw sequence reads","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Camelus dromedarius","leadOrganizations":["Kuwait institute for scientific research"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/01/30; operational lifecycle is not asserted.","statusEvidenceDate":"2024-01-30","description":"The project aims to explore the microbiome of dromedary camel milk through shotgun metagenomic sequencing. The study will investigate the composition and functional potential of the microbiota present in dromedary camel milk. The project seeks to contribute to our understanding of the dromedary camel milk microbiome, potentially uncovering novel microbial strains and their functional implications. Insights gained from this research may have applications in food safety, nutrition, and the development of probiotic products.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1070879"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1070879"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1070879","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1070879:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1070879","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1072982","name":"Acinetobacter baumannii Genome sequencing and assembly","displayTitle":"Acinetobacter baumannii Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Acinetobacter baumannii","leadOrganizations":["King Saud University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/02/03; operational lifecycle is not asserted.","statusEvidenceDate":"2024-02-03","description":"The bacterial strains were isolated from the in and out patient samples such as blood and sputum of Government hospitals in and around Riyadh City, Saudi Arabia from November 2023 to December 2023. After collection, the samples were processed in the Microbiology lab for genotypic identification. Later, the samples were processed further for antibiotic sensitivity assay and molecular identification.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1072982"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1072982"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1072982","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1072982:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1072982","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1075504","name":"Gut microbial diversity of chicken fed with Spirulina and Chlorella","displayTitle":"Gut microbial diversity of chicken fed with Spirulina and Chlorella","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/02/12; operational lifecycle is not asserted.","statusEvidenceDate":"2024-02-12","description":"Feed-based changes in the Chicken gut microbial diversity have been studied in several contexts. However, studies using an integrated approach of the metagenome and metabolome of the chicken gut are limited. In the current study, using an integrated metagenome and metabolomics approach, we aimed to explore the changes in gut microflora and their potential impact on the Chickens fed with Spirulina and Chlorella, and a combination of both. The gut metagenome of the treatment groups was mainly involved in amino acid and carbohydrate metabolism, and metabolism of co-factors and vitamins. These findings also correlate with the functional annotations of the metabolites identified in Spirulina samples. Overall, the Spirulina-fed Chicken may have a positive impact on the health through increased metabolic rate.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1075504"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1075504"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1075504","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1075504:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1075504","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1077636","name":"Resistomes of Jahra Reserve","displayTitle":"Resistomes of Jahra Reserve","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/02/18; operational lifecycle is not asserted.","statusEvidenceDate":"2024-02-18","description":"Study on the antibiotic resistance genes harboured by the microbial communities in the aquatic sediments of this reserve.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1077636"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1077636"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1077636","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1077636:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1077636","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1077647","name":"Complete Genome Sequencing of the Mezayen Arabian Camel(Camelus dromedarius)","displayTitle":"Complete Genome Sequencing of the Mezayen Arabian Camel(Camelus dromedarius)","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Camelus dromedarius","leadOrganizations":["King Abdulaziz City for Science and Technology"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/03/28; operational lifecycle is not asserted.","statusEvidenceDate":"2024-03-28","description":"This project aims to sequence and assemble the first complete male Mezayen camel genome, utilizing a sample from Hakaman, a distinguished camel from the farm of Mr. Mohamed bin Abdullah Alfassam in Wadi Aldwaser, Saudi Arabia. Notable for placing second in the King Abdulaziz Camel Festival's Majaheem beauty contest in December 2019, Hakaman was chosen due to his esteemed genetic lineage. This project seeks to enhance the understanding of camel genomics, reflecting the cultural and socio-economic significance of the Mezayen camel in the Middle East, particularly in the Gulf countries.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1077647"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1077647"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1077647","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1077647:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1077647","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1077908","name":"Sequencing a CC239-MRSA-III with a novel composite SCCmec element from Kuwait","displayTitle":"Sequencing a CC239-MRSA-III with a novel composite SCCmec element from Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Leibniz Institute of Photonic Technology (IPHT)"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/02/19; operational lifecycle is not asserted.","statusEvidenceDate":"2024-02-19","description":"In Kuwait, microarray-based surveillance identified from 2019 to 2022 a series of isolates of a hitherto unknown variant of the ancient hospital-acquired MRSA strain CC239-MRSA-III that carried a second set of recombinase genes, ccrA/B-2. To elucidate the structure of this variants SCCmec element, two isolates were subjected to nanopore sequencing. For comparison, an older isolate of a presumed precursor strain was also sequenced.This revealed in addition to ccrA/B-2 in the new variant also a presence of hsdS (type I restriction-modification system site-specificity determinate), speG (spermidine N acetyltransferase), a couple of genes encoding putative proteins, cch (cassette chromosome helicase), transposase genes and a large E-domain containing protein (dubbed as edcP-SCC). This gene contained three regions consisting of multiple repeating units. In terms of sequence and structure it was similar but not identical to the biofilm-related aap gene known from S. epidermidis.All three isolates carried a prophage with the adhesion factor sasX/sesI and aminoglycoside resistance genes which is in accordance to an affiliation to the South-East Asian Clade of CC239.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1077908"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1077908"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1077908","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1077908:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1077908","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1078125","name":"Siganus canaliculatus Genome sequencing","displayTitle":"Siganus canaliculatus Genome sequencing","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Siganus canaliculatus","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/02/20; operational lifecycle is not asserted.","statusEvidenceDate":"2024-02-20","description":"The objective of this study was to produce a high-quality reference genome of Siganus canaliculatus with chromosome level assembly. Specimens were obtained from the wild for whole genome sequencing. The sequencing was performed using the combination of a short read technique (Illumina Technology) and a long read sequencing technique (Oxford Nanopore Technology). Moreover, chromatin conformation capture sequencing (Hi-C) was done to obtain chromosome level genome assembly. This high-quality chromosome level assembly will provide a valuable genomic resource for future population genetics and selective breeding studies in this species.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1078125","SRA2503430","SRR40015913"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1078125"},{"scheme":"SRA Study","value":"SRA2503430"},{"scheme":"Run","value":"SRR40015913"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1078125","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1078125:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1078125","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1078326","name":"Date palm AlUla root 18S","displayTitle":"Date palm AlUla root 18S","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["CIRAD"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/02/20; operational lifecycle is not asserted.","statusEvidenceDate":"2024-02-20","description":"18S sequencing of roots of Date palms (Phoenix dactylifera) from AlUla, Saudi Arabia. Samples were collected at differents depths and in different irrigation conditions.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1078326"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1078326"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1078326","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1078326:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1078326","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1083093","name":"Spatial and Seasonal Analysis of the Physicochemical Properties and Microbial Community Structure in the Water and Soil of Al-Jahra Nature Reserve, Kuwait","displayTitle":"Spatial and Seasonal Analysis of the Physicochemical Properties and Microbial Community Structure in the Water and Soil of Al-Jahra Nature Reserve, Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/03/03; operational lifecycle is not asserted.","statusEvidenceDate":"2024-03-03","description":"Microorganisms make up the foundation of food webs and have critical roles in ecosystem functions. In this study, the microbial community structure of the first artificial freshwater wetland in Kuwait, Al-Jahra Nature Reserve (JNR), is investigated for the first time. The spatial and seasonal variation of the physicochemical characteristics and microbial diversity and abundance of archaeal and bacterial communities in 3 water bodies and 10 soil samples were studied to understand the change in soil type that occurred after the introduction of tertiary treated wastewater to formerly, desert soils for over 30 years. Spatial and seasonal variation in the physicochemical characteristics and the microbial community structure (MCS) was confirmed in the water and soil samples. The diversity and abundance of soil MCS were higher than in the water samples in JNR. Also, bacterial Operational Taxonomic Units (OTUs) were higher than archaeal OTUs in JNR water and soil samples. The freshwater wetland soil in JNR had the highest OTUs and microbial diversity among other soil types with the dominance of Proteobacteria members. The potential key driver in shaping the MCS in JNR samples was soil structure that determines the amount of nutrient, salinity, and moisture that are held in the soil. Although the differences between MCS of JNR water and soil samples were apparent, keystone phyla (i.e., Proteobacteria, Firmicutes, Bacteroidetes, Gemmatimonadetes, Actinobacteria, and Acidobacteria) sequences were present in all the collected samples. The results from this study are essential to understand the transitional soil phases that are created when artificial wetlands are constructed and could be used as a guide to establishing other wetlands in locations with similar physicochemical characteristics.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1083093"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1083093"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1083093","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1083093:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1083093","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1084866","name":"Western Asia Bat Research Network (WABNet)","displayTitle":"Western Asia Bat Research Network (WABNet)","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Western Asia Bat Research Network","EcoHealth Alliance","Bio-Safety & Bio-Security Centre, Royal Scientific Society, Amman, Jordan","Environment Authority, Oman","Institute of Environmental Sciences, Boğaziçi University, Istanbul, Turkey","Institute of Zoology, Azerbaijan National Academy of Sciences, Baku, Azerbaijan","R.G. Lugar Center for Public Health Research at National Center for Disease Control & Public Health, Tbilisi, Georgia","University of Veterinary & Animal Sciences, Lahore, Pakistan","Virus Ecology Section, Rocky Mountain Laboratories, National Institutes of Health, Hamilton, MT, USA","Yerevan State University, Yerevan, Armenia"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/03/06; operational lifecycle is not asserted.","statusEvidenceDate":"2024-03-06","description":"Partial genome sequences of Coronaviruses detected from diverse bat species (Order Chiroptera) in Western Asia. Primarily partial RdRp Coronavirus sequences. Project also includes DNA Barcoding (cytochrome B) and other genomic data from bat host species.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Targeted Locus (Loci)","Sequencing","Genome"],"accessionIds":["PRJNA1084866"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1084866"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1084866","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1084866:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1084866","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1086706","name":"Salmonella UAE1: Salmonella in retail chicken in the UAE","displayTitle":"Salmonella UAE1: Salmonella in retail chicken in the UAE","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Not stated","leadOrganizations":["Solu Healthcare Oy"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/03/12; operational lifecycle is not asserted.","statusEvidenceDate":"2024-03-12","description":"The project stems from a beeline survey that was conducted at retail level in the United Arab Emirates throughout the year 2023. The project involved sampling, testing, and characterization of Salmonella in fresh chicken meat (whole carcasses) from locally produced brands.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1086706"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1086706"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1086706","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1086706:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1086706","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1086909","name":"WGS of Foot-and-mouth disease virus SAT2","displayTitle":"WGS of Foot-and-mouth disease virus SAT2","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Not stated","leadOrganizations":["ANSES"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/03/12; operational lifecycle is not asserted.","statusEvidenceDate":"2024-03-12","description":"WGS of Foot-and-mouth disease virus SAT2/XIV isolated in Oman in 2023","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1086909"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1086909"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1086909","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1086909:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1086909","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1088301","name":"Padina gymnospora Genome sequencing and assembly","displayTitle":"Padina gymnospora Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Padina gymnospora","leadOrganizations":["Kuwait Institute for Scientific Research","CD Genomics"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/03/15; operational lifecycle is not asserted.","statusEvidenceDate":"2024-03-15","description":"Padina gymnospora, a brown macroalgae collected from Kuwait coast was subjected to Whole Genome Sequencing by Illumina","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1088301"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1088301"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1088301","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1088301:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1088301","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1088719","name":"SR/AGR/SWAE /21/01 Integrating modern soil and water-smart technologies for salinity management in the Sultanate of Oman, His Majesty Fund","displayTitle":"SR/AGR/SWAE /21/01 Integrating modern soil and water-smart technologies for salinity management in the Sultanate of Oman, His Majesty Fund","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Daniel Blackburn, Assoc. Professor,  Department of Soils, Water and Agricultural Engineering - SQU"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/03/16; operational lifecycle is not asserted.","statusEvidenceDate":"2024-03-16","description":"Our central hypothesis is that ECB, biochar and S0 amendments will have synergistic effects on the reclamation and management of saline soils in Oman with a significant increase in soil health, water use efficiency, soil fertility and carbon sequestration.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1088719"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1088719"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1088719","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1088719:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1088719","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1092990","name":"Characterisation of PVL-positive Staphylococcus argenteus from the United Arab Emirates","displayTitle":"Characterisation of PVL-positive Staphylococcus argenteus from the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Leibniz Institute of Photonic Technology (IPHT)"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/03/28; operational lifecycle is not asserted.","statusEvidenceDate":"2024-03-28","description":"Staphylococcus argenteus is a recently described staphylococcal species that is related to Staphylococcus aureus but that lacks the staphyloxanthin operon. It is able to acquire both, resistance markers such as the SCCmec elements and mobile genetic elements carrying virulence-associated genes from S. aureus. This includes those encoding the Panton-Valentine leukocidin (PVL), which is associated mainly with severe and/or recurrent staphylococcal skin and soft tissue infections. Here, we describe the genome sequences of two PVL-positive, mecA-negative S. argenteus sequence type (ST) 2250 isolates from the United Arab Emirates in detail. Isolates were found during a study on environmental contamination in a dental clinic in the United Arab Emirates (UAE). Both were sequenced using Oxford Nanopore Technology (ONT). This demonstrated the presence of temperate bacteriophages in the staphylococcal genomes including a PVL prophage. It was es-sentially identical to the published sequence of phiSa2wa_st78 (GenBank NC_055048), a PVL phage from an Australian S. aureus clonal complex (CC) 88 isolate. Beside the PVL prophage, one isolate carried another prophage and the second isolate carried two additional prophages, whereby the region between these two prophages was inverted. This flipped region comprised about 1,083,000 bp, or more than a third of the strains genome, and it included the PVL pro-phage","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1092990"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1092990"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1092990","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1092990:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1092990","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1093282","name":"Environmental DNA metabarcoding data of microbial communities from wetland soils of NEOM, Saudi Arabia","displayTitle":"Environmental DNA metabarcoding data of microbial communities from wetland soils of NEOM, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["NEOM","King Fahd University of Petroleum and Minerals"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/03/29; operational lifecycle is not asserted.","statusEvidenceDate":"2024-03-29","description":"The data provide a snapshot of the prokaryotic and eukaryotic microbial communities present in the NEOM wetland of Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1093282"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1093282"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1093282","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1093282:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1093282","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1095688","name":"Long-read sequencing to detect full-length protein-protein interactions","displayTitle":"Long-read sequencing to detect full-length protein-protein interactions","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Weill Cornell Medicine in Qatar"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/04/03; operational lifecycle is not asserted.","statusEvidenceDate":"2024-04-03","description":"Given the increased predictions on interactome size and demand for protein function information, methods for detecting protein-protein interactions remain a significant development area. The all-vs.-all sequencing (AVA-Seq) method utilizes a convergent fusion plasmid design to make two-hybrid technology amenable to next-generation sequencing. Here, we further innovate to take advantage of synthetic DNA technologies and Oxford Nanopore Technologies long-read sequencing improvements to allow us to determine full-length protein-protein interactions. Here, using this approach we recovered 159 protein-protein interactions from a set of 57 human proteins using multiple forms of validation. Further, when referencing a human gold standard set of interactions, eight full-length protein-protein interactions were recovered from an expected 28 interaction pairs (28.6%), a typical recovery rate for two-hybrid technologies. The AVA-Seq, in combination with the ease of synthetic DNA production and the MinION platform, offers a low-cost, high-throughput alternative for determining protein-protein interactions, which can be utilized in research labs at all stages.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1095688"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1095688"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1095688","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1095688:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1095688","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1096000","name":"Genomic Insights of Salmonella, Virulence Markers, Antimicrobial Resistance, Phylogenetic Relatedness from Chicken Eggs in Saudi Arabia","displayTitle":"Genomic Insights of Salmonella, Virulence Markers, Antimicrobial Resistance, Phylogenetic Relatedness from Chicken Eggs in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Saudi Food and Drug Authority"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/04/03; operational lifecycle is not asserted.","statusEvidenceDate":"2024-04-03","description":"Genomic Insights of Salmonella, Virulence Markers, Antimicrobial Resistance, Phylogenetic Relatedness from Chicken Eggs in Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1096000"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1096000"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1096000","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1096000:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1096000","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1100291","name":"Whole genome sequencing of Brucella","displayTitle":"Whole genome sequencing of Brucella","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/04/15; operational lifecycle is not asserted.","statusEvidenceDate":"2024-04-15","description":"Clinical isolates of Brucella melitensis were sequenced to look at the genomic composition and variants.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1100291"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1100291"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1100291","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1100291:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1100291","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1101204","name":"Whole genome sequencing of MDR Acinetobacter in Qatar","displayTitle":"Whole genome sequencing of MDR Acinetobacter in Qatar","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Acinetobacter baumannii","leadOrganizations":["National Centre for Infectious Diseases"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/04/17; operational lifecycle is not asserted.","statusEvidenceDate":"2024-04-17","description":"Multi-drug resistant clinical isolates of Acinetobacter are whole genome sequenced. The resistant genes were characterized and compared to the MICs data, and the genetic relationship was inferred based on SNPs.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1101204"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1101204"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1101204","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1101204:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1101204","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1103427","name":"Comprehensive genome analysis of XDR Gram-Negative isolates","displayTitle":"Comprehensive genome analysis of XDR Gram-Negative isolates","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Medical Laboratory Sciences Department, Faculty of Applied Medical Sciences, King Abdulaziz Universi"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/04/23; operational lifecycle is not asserted.","statusEvidenceDate":"2024-04-23","description":"The first known case of co-infection with two extensively drug-resistant (XDR) bacterial isolates in a critically ill patient with COVID-19 in Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1103427"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1103427"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1103427","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1103427:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1103427","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1105356","name":"Genomic Study of High-Risk Clones of Enterobacter hormaechei Collected from Tertiary Hospitals in the United Arab Emirates","displayTitle":"Genomic Study of High-Risk Clones of Enterobacter hormaechei Collected from Tertiary Hospitals in the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["United Arab Emirates University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/04/27; operational lifecycle is not asserted.","statusEvidenceDate":"2024-04-27","description":"Our research focused on characterizing carbapenem-resistant Enterobacter hormaechei from the UAE and analyzing its antimicrobial resistance genes and epidemiological and phylogenetic characteristics using whole genome sequencing (WGS).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1105356"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1105356"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1105356","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1105356:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1105356","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1107218","name":"genomic and phenotypic diversity of clinical isolates of Klebsiella 4 pneumoniae","displayTitle":"genomic and phenotypic diversity of clinical isolates of Klebsiella 4 pneumoniae","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["University College Dublin"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/05/02; operational lifecycle is not asserted.","statusEvidenceDate":"2024-05-02","description":"Klebsiella isolates cultured from various sources within a university teaching hospital in Saudi Arabia were characterised using whole genome sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1107218"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1107218"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1107218","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1107218:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1107218","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1108764","name":"The chevron butterflyfish (Chaetodon trifascialis), also known as chevroned butterflyfish, triangulate butterflyfish or V-lined butterflyfish, is a species of marine ray-finned fish, a butterflyfish belonging to the family Chaetodontidae.","displayTitle":"The chevron butterflyfish (Chaetodon trifascialis), also known as chevroned butterflyfish, triangulate butterflyfish or V-lined butterflyfish, is a species of marine…","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Chaetodon trifascialis","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/05/07; operational lifecycle is not asserted.","statusEvidenceDate":"2024-05-07","description":"The chevron butterflyfish (Chaetodon trifascialis), also known as chevroned butterflyfish, triangulate butterflyfish or V-lined butterflyfish, is a species of marine ray-finned fish, a butterflyfish belonging to the family Chaetodontidae. It has a wide Indo-Pacific distribution (from Wikipedia entry). This sample of a male individual found in the Red Sea near Saudi Arabia was procured by Jessica Nowicki, David Ramirez, and Lauren O'Connell to generate a high-quality reference genome for a neuroscience project and the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1108764","PRJNA1108765"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1108764"},{"scheme":"BioProject","value":"PRJNA1108765"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1108764","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1108764:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1108764","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1108764:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1108765","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1112130","name":"Campylobacter: A Case Study in the United Arab Emirates Integrated Abattoir System","displayTitle":"Campylobacter: A Case Study in the United Arab Emirates Integrated Abattoir System","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Not stated","leadOrganizations":["Solu Healthcare Oy"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/05/16; operational lifecycle is not asserted.","statusEvidenceDate":"2024-05-16","description":"This study centers on one of the major chicken producers in the UAE, analyzing Campylobacter contamination from slaughter to post-chiller carcasses. 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Aditionally, whole genome sequencing (WGS) of a selection of ten isolates was performed to detect antimicrobial resistance determinants and toxin-related factors.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1119919"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1119919"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1119919","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1119919:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1119919","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1120375","name":"A Genomic Approach for Accurate Identification of Sheep and Goat Species in Next-Generation Sequencing Samples","displayTitle":"A Genomic Approach for Accurate Identification of Sheep and Goat Species in Next-Generation Sequencing Samples","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Khalifa University","Center for Biotechnology (BTC) - Khalifa University (KU)"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/06/05; operational lifecycle is not asserted.","statusEvidenceDate":"2024-06-05","description":"Whole Genome Sequencing (WGS) using Illumina short reads for 20 sheep (Ovis aries) and 20 goats (Capra hircus) from the United Arab Emirates (UAE). 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operational lifecycle is not asserted.","statusEvidenceDate":"2024-06-30","description":"By; Nevin A. Ibrahim (a), Abla Elawady (b), Hibah M Albasri (c), Mohamed Ismaeil (a)and Samah Donia (a) === (a) Microbiology Department, Faculty of Science, Ain Shams University, Cairo, Egypt; ===(b) Agricultural Genetic Engineering Research Institute, Giza, Egypt ===(c) Department of Biology, College of Science, Taibah University, Al-Madinah, Kingdom of Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1130041"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1130041"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1130041","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1130041:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1130041","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1131975","name":"Cefiderocol Resistance among Escherichia coli in the United Arab Emirates","displayTitle":"Cefiderocol Resistance among Escherichia coli in the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["UAEU"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/05; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-05","description":"Cefiderocol Resistance among Escherichia coli in the United Arab Emirates","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1131975"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1131975"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1131975","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1131975:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1131975","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1132804","name":"Dust monthly deposition and bacterial composition in arid regions.","displayTitle":"Dust monthly deposition and bacterial composition in arid regions.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Carnegie Mellon University Qatar"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/08; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-08","description":"Dust storms in the Middle East pose challenges to public health not only through exacerbation of air quality issues but by the hidden world of microorganisms that traverse large distances within these dust plumes. Bacterial diversity was investigated in dust samples collected from Qatar over two years. DNA was isolated followed by next-generation amplicon sequencing of hypervariable regions of the 16 S ribosomal RNA gene and the results were obtained for analysis using bioinformatics of 16S data. Our findings suggest that the time of year have potential effects on the composition of the airborne bacterial community.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1132804"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1132804"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1132804","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1132804:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1132804","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1134213","name":"Avicennia marina endophytic bacterial diversity and population dynamics in response to polycyclic aromatic hydrocarbons pollutants revealed by comparative metagenomics","displayTitle":"Avicennia marina endophytic bacterial diversity and population dynamics in response to polycyclic aromatic hydrocarbons pollutants revealed by comparative metagenomics","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Ain Shams University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-10","description":"Prepared byRasha M. Alreedy: Department of Bioinformatics, Agricultural Genetic Engineering Research Institute, Agricultural Research center, Giza, EgyptAhmed M. Hanafy: Department of Microbiology, Faculty of Science, Ain Shams University, Cairo, EgyptAreeg A. Farhan: Department of Biology, College of Science, Taibah University, Al-Madinah, Saudi Arabia Wael S. El-Sayed: Department of Microbiology, Faculty of Science, Ain Shams University, Cairo, Egypt","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1134213"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1134213"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1134213","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1134213:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1134213","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1135445","name":"Whole genome Sequencing of multi drug resistant Acinetobacter baumannii","displayTitle":"Whole genome Sequencing of multi drug resistant Acinetobacter baumannii","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/13; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-13","description":"Genotypically multiple drug resistant Acinetobacter baumannii isolates were identified from hospitals of Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1135445"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1135445"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1135445","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1135445:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1135445","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1139351","name":"Chaetodon trifascialis (chevron butterflyfish) genome, fChaTrf1, sequence data","displayTitle":"Chaetodon trifascialis (chevron butterflyfish) genome, fChaTrf1, sequence data","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/24; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-24","description":"The chevron butterflyfish (Chaetodon trifascialis), also known as chevroned butterflyfish, triangulate butterflyfish or V-lined butterflyfish, is a species of marine ray-finned fish, a butterflyfish belonging to the family Chaetodontidae. It has a wide Indo-Pacific distribution (from Wikipedia entry). This sample of a male individual found in the Red Sea near Saudi Arabia was procured by Jessica Nowicki, David Ramirez, and Lauren O'Connell to generate a high-quality reference genome for a neuroscience project and the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1139351"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1139351"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1139351","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1139351:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1139351","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1140150","name":"Equus caballus (Domesticated horse) genome, mEquCab1, sequence data","displayTitle":"Equus caballus (Domesticated horse) genome, mEquCab1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/25; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-25","description":"The domesticated horse (Equus caballus) is a one-toed, hoofed mammal, and one of the most iconic species distinguished by its unique history, diverse breeds, and significant role in human society. This sample (mEquCab1) is from a male Arabian horse bred at Al Shaqab Equestrian Center, in Qatar. Samples were also obtained from the parents (mother mEquCab3 and father mEquCab2). These samples were collected by Tatiana Vinardell, and coordinated and provided by Farooq Omar Al-Ajli (Katara Biodiversity Genomes Program), to create trio-based high-quality assemblies of the maternal and paternal haplotypes for the Vertebrate Genomes Project (VGP) and Qatar Biodiversity Genomes Project (QBGP). Sequencing was done at the Vertebrate Genomes Lab (VGL) at Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. Genome assembly was conducted at Sidra Medicine by Farooq Omar Al-Ajli and Khalid A. 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This sample (mEquCab2) is from a male Arabian horse bred at Al Shaqab Equestrian Center, in Qatar. The sample was part of a trio (offspring mEquCab1 and mother mEquCab3). These samples were collected by Tatiana Vinardell, and coordinated and provided by Farooq Omar Al-Ajli (Katara Biodiversity Genomes Program), to create trio-based high-quality assemblies of the maternal and paternal haplotypes for the Vertebrate Genomes Project (VGP) and Qatar Biodiversity Genomes Project (QBGP). Sequencing was done at the Vertebrate Genomes Lab (VGL) at Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. Genome assembly was conducted at Sidra Medicine by Farooq Omar Al-Ajli and Khalid A. 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It is native to the desert and steppe regions of Asia, west from the Sinai Peninsula extending across Kazakhstan east to Mongolia. This sample (bChlMac1) is from a female, bred at the Rawdat Al Faras Houbara Breeding Center, in Qatar. Samples were also obtained from the parents (mother bChlMac3 and father bChlMac2). These samples were collected and coordinated by Farooq Omar Al-Ajli (Katara Biodiversity Genomes Program), to create trio-based high-quality assemblies of the maternal and paternal haplotypes for the Vertebrate Genomes Project (VGP) and Qatar Biodiversity Genomes Project (QBGP). Sequencing was done at the Vertebrate Genomes Lab (VGL) at Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. Genome assembly was conducted at Sidra Medicine by Farooq Omar Al-Ajli and Khalid A. 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Fakhro in collaboration with VGL.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1140157"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1140157"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1140157","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1140157:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1140157","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1140158","name":"Chlamydotis macqueenii (MacQueen's bustard) genome, bChlMac3, sequence data","displayTitle":"Chlamydotis macqueenii (MacQueen's bustard) genome, bChlMac3, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/25; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-25","description":"MacQueen's bustard (Chlamydotis macqueenii) is a large bird in the bustard family, renowned for its distinctive courtship display and adaptation to arid landscapes. It is native to the desert and steppe regions of Asia, west from the Sinai Peninsula extending across Kazakhstan east to Mongolia. This sample (bChlMac3) is from a female, bred at the Rawdat Al Faras Houbara Breeding Center, in Qatar. The sample was part of a trio (offspring bChlMac1 and male bChlMac2). These samples were collected and coordinated by Farooq Omar Al-Ajli (Katara Biodiversity Genomes Program), to create trio-based high-quality assemblies of the maternal and paternal haplotypes for the Vertebrate Genomes Project (VGP) and Qatar Biodiversity Genomes Project (QBGP). Sequencing was done at the Vertebrate Genomes Lab (VGL) at Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. Genome assembly was conducted at Sidra Medicine by Farooq Omar Al-Ajli and Khalid A. Fakhro in collaboration with VGL.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1140158"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1140158"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1140158","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1140158:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1140158","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1140636","name":"Nitrifying microbes in the northwest Arabian Gulf","displayTitle":"Nitrifying microbes in the northwest Arabian Gulf","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/26; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-26","description":"This study used a metagenomic sequencing approach to generate spatiotemporal profiles of marine nitrifying microbes in the unique waters of the northwest Arabian Gulf. The study was conducted over a 12-month period and involved analysis of nucleic acids isolated from seawater samples collected monthly from both the surface and the bottom of the water column from three distinct sampling sites, as well as from sediment samples from the same sites. Metagenomic sequencing at a depth of 20 M paired-end reads per sample was performed followed by bioinformatic analysis. Collectively, the data generated allows for comparisons of nitrifying microbial community structure between the surface and the bottom of the water column, seawater and sediment, four different seasons (summer, autumn, winter, and spring), and three different stations. This study is the first of its kind to comprehensively investigate nitrogen cycling in Kuwaiti territorial waters of the northwest Arabian Gulf with the aim of gaining necessary insights into microbial regulation of this biogeochemical process, which has immense environmental and economic implications particularly in the local context of oil production and clearance of oil spills.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1140636"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1140636"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1140636","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1140636:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1140636","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1141237","name":"Genomic analysis of Clinical Isolates of Escherichia coli from the United Arab Emirates","displayTitle":"Genomic analysis of Clinical Isolates of Escherichia coli from the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["UAEU"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/29; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-29","description":"Genomic analysis of Clinical Isolates of Escherichia coli from the United Arab Emirates","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1141237"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1141237"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1141237","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1141237:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1141237","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1141350","name":"Enhancing Bioremediation in Desert Soils: Comparative Impacts of Water-and Sewage Effluent-Irrigation on Oil Degradation and Microbial Dynamics","displayTitle":"Enhancing Bioremediation in Desert Soils: Comparative Impacts of Water-and Sewage Effluent-Irrigation on Oil Degradation and Microbial Dynamics","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait University, Faculty of Science, Department of Biological Sciences"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/29; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-29","description":"A merger among biostimulation, bioaugmentation and phytoremediation for microcosm-bioremediation of heavily oil-contaminated desert soil.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1141350"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1141350"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1141350","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1141350:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1141350","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1141623","name":"The Arabian camel (Camelus dromedarius ) is a one-humped camel species found in the Middle East and North Africa.","displayTitle":"The Arabian camel (Camelus dromedarius ) is a one-humped camel species found in the Middle East and North Africa.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Multiple records","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/29; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-29","description":"The Arabian camel (Camelus dromedarius ) is a one-humped camel species found in the Middle East and North Africa. It is remarkable for its adaptations to arid environments and has been integral to human societies in these regions. This sample (mCamDro1) is from a female bred at Mr. Shabat bin Saqar Al-Muraikhi camel breeding farm, in Qatar. The sample was part of a trio (offspring mCamDro1, father mCamDro2 and mother mCamDro3). These samples were collected and coordinated by Farooq Omar Al-Ajli (Katara Biodiversity Genomes Program), to create trio-based high-quality assemblies of the maternal and paternal haplotypes for the Vertebrate Genomes Project (VGP) and Qatar Biodiversity Genomes Project (QBGP). Sequencing was done at the Vertebrate Genomes Lab (VGL) at Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. Genome assembly was conducted at Sidra Medicine by Farooq Omar Al-Ajli and Khalid A. Fakhro in collaboration with VGL.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1141623","PRJNA1141699"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1141623"},{"scheme":"BioProject","value":"PRJNA1141699"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1141623","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1141623:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1141623","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1141623:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1141699","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1141624","name":"Camelus dromedarius (Arabian camel) genome, mCamDro2, sequence data","displayTitle":"Camelus dromedarius (Arabian camel) genome, mCamDro2, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/07/29; operational lifecycle is not asserted.","statusEvidenceDate":"2024-07-29","description":"The Arabian camel (Camelus dromedarius ) is a one-humped camel species found in the Middle East and North Africa. It is remarkable for its adaptations to arid environments and has been integral to human societies in these regions. This sample (mCamDro2) is from a male bred at Mr. Shabat bin Saqar Al-Muraikhi camel breeding farm, in Qatar. The sample was part of a trio (offspring mCamDro1 and female mCamDro3). These samples were collected and coordinated by Farooq Omar Al-Ajli (Katara Biodiversity Genomes Program), to create trio-based high-quality assemblies of the maternal and paternal haplotypes for the Vertebrate Genomes Project (VGP) and Qatar Biodiversity Genomes Project (QBGP). Sequencing was done at the Vertebrate Genomes Lab (VGL) at Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. Genome assembly was conducted at Sidra Medicine by Farooq Omar Al-Ajli and Khalid A. Fakhro in collaboration with VGL.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1141624"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1141624"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1141624","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1141624:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1141624","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1143395","name":"Resistance to antibiotics in aquatic and marine environments in the UAE","displayTitle":"Resistance to antibiotics in aquatic and marine environments in the UAE","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Escherichia coli","leadOrganizations":["Cefas"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/08/02; operational lifecycle is not asserted.","statusEvidenceDate":"2024-08-02","description":"The aim of this study was to isolate, grow and characterise Escherichia coli from water samples taken from coastal and inland areas within the United Arab Emirates. A total of 256 E. coli from twelve locations were isolated and tested for antibiotic sensitivity using EUVSEC and EUVSEC 2 plates (Thermo Scientific). A subset of isolates (n = 92) were sequenced to provide insight into their genetic diversity and mechanisms of resistance.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1143395"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1143395"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1143395","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1143395:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1143395","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1155289","name":"Salmonella enterica subsp. enterica serovar Enteritidis Genome sequencing","displayTitle":"Salmonella enterica subsp. enterica serovar Enteritidis Genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Salmonella enterica subsp. enterica serovar Enteritidis","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/09/02; operational lifecycle is not asserted.","statusEvidenceDate":"2024-09-02","description":"Salmonella enteritidis is a leading cause of foodborne illness worldwide, with significant public health implications. In this study, we apply whole-genome sequencing combined with advanced bioinformatics analyses to investigate the epidemiology, transmission dynamics, and population structure of Salmonella enteritidis in Saudi Arabia. By analyzing a robust collection of isolates obtained from various sources across the country, we uncover critical insights into the genetic diversity, antimicrobial resistance patterns, and transmission routes of this pathogen.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Other","Genome"],"accessionIds":["PRJNA1155289"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1155289"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1155289","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1155289:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1155289","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1155881","name":"Molecular epidemiology and drug resistance patterns of Mycobacterium tuberculosis isolates among Ethiopian returnees of Saudi Arabia","displayTitle":"Molecular epidemiology and drug resistance patterns of Mycobacterium tuberculosis isolates among Ethiopian returnees of Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Armauer Hansen Research Institute"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/09/03; operational lifecycle is not asserted.","statusEvidenceDate":"2024-09-03","description":"This study aims to characterize the molecular epidemiology and drug resistance patterns of Mycobacterium tuberculosis (M. tuberculosis) isolates from TB presumptive cases, who were further confirmed by Xpert for pulmonary TB.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1155881"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1155881"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1155881","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1155881:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1155881","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1158477","name":"16S rRNA gene amplicon sequencing and functional profiling of Rhizosphere Bacteria in Date Palms Reveal Diverse Potential Plant Growth-Promoting traits","displayTitle":"16S rRNA gene amplicon sequencing and functional profiling of Rhizosphere Bacteria in Date Palms Reveal Diverse Potential Plant Growth-Promoting traits","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Ain shams University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/09/08; operational lifecycle is not asserted.","statusEvidenceDate":"2024-09-08","description":"By; Sultan M. Alsharif1, Mohamed Ismaeil2*, Heba M. Al-Basri1 and Wael S. El Sayed2where, 1-Department of Biology, College of Science, Taibah University, Al Madinah, Kingdom of Saudi Arabia. 2-Microbiology Department, Faculty of Science, Ain Shams University, Cairo, Egypt.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1158477"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1158477"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1158477","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1158477:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1158477","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1159017","name":"Whole Genome Sequencing of Saudi Arabia Pomegranate (Punica granatum L.)","displayTitle":"Whole Genome Sequencing of Saudi Arabia Pomegranate (Punica granatum L.)","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/09/10; operational lifecycle is not asserted.","statusEvidenceDate":"2024-09-10","description":"The pomegranate (Punica granatum L.) is an ancient fruit-bearing small tree well known for its dark red, tangy-sweet, and antioxidant rich fruit juice. Pomegranates are native to the Middle East, and Saudi Arabia produces large quantities of pomegranates in its mountainous regions of Al-Baha, which have recently gained immense popularity. The genetic resources and genome-scale data of the Saudi Pomegranate variety were unavailable for study. In this study, we assemble a chromosome-level reference genome of the Saudi Pomegranate variety using PacBio HiFi long reads. The data will support conservation, molecular breeding, variety identification, and the discovery of traits like disease resistance and stress tolerance in pomegranates in Saudi Arabia and worldwide.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1159017"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1159017"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1159017","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1159017:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1159017","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1159183","name":"Population Genomics of Oysters in the Persian Arabian Gulf","displayTitle":"Population Genomics of Oysters in the Persian Arabian Gulf","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Persian Arabian Gulf Invertebrate Genomes"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/09/10; operational lifecycle is not asserted.","statusEvidenceDate":"2024-09-10","description":"This study is aimed at determining the effect of the physical, geographic, and thermosaline gradients of the Persian Arabian Gulf and Gulf of Oman on the pearl oyster. Oysters were collected from several locations along the coast of these gulfs and the genomic DNA was extracted for whole genome analysis and population genomics.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1159183"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1159183"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1159183","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1159183:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1159183","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1162699","name":"Mitochondrial genome","displayTitle":"Mitochondrial genome","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Dasman Diabetes Institute"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/09/19; operational lifecycle is not asserted.","statusEvidenceDate":"2024-09-19","description":"Mitochondrial genome in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1162699"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1162699"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1162699","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1162699:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1162699","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1168260","name":"Hepatitis B virus Genome sequencing and assembly","displayTitle":"Hepatitis B virus Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Hepatitis B virus","leadOrganizations":["jazan university"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/10/03; operational lifecycle is not asserted.","statusEvidenceDate":"2024-10-03","description":"HBV genotypes and serotypes are associated with the severity of liver disease in patients in the Jazan area of Saudi Arabia. In addition, certain genotypes and serotypes are more strongly associated with advanced liver disease, including cirrhosis and HCC, compared to others.General objective:The general objective of this study is to investigate the role of HBV genotypes and serotypes in the severity of liver disease in patients in the Jazan area, Saudi Arabia. The study aims to determine whether certain genotypes and serotypes are associated with more severe liver disease, including cirrhosis and HCC.Specific objectives:1. To determine the prevalence of HBV genotypes and serotypes in patients with liver disease in the Jazan area of Saudi Arabia.2. To assess the association between HBV genotypes/serotypes and the severity of liver disease patients in the Jazan area.3. To investigate the relationship between HBV viral load and liver disease severity in patients with different genotypes and serotypes.4. To evaluate the response to antiviral therapy in patients with different HBV genotypes and serotypes in the Jazan area of Saudi Arabia.5. To identify the HBV MiRNA and LnRNA at the whole-genome expression level.6. To sequence the whole genome in HCC with or without HBV infection","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1168260"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1168260"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1168260","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1168260:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1168260","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1175015","name":"A comprehensive study of the population dynamics of Hospital-Acquired MRSA using genomic epidemiology within a healthcare facility in Saudi Arabia.","displayTitle":"A comprehensive study of the population dynamics of Hospital-Acquired MRSA using genomic epidemiology within a healthcare facility in Saudi Arabia.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/10/19; operational lifecycle is not asserted.","statusEvidenceDate":"2024-10-19","description":"This study focuses on the population dynamics of Hospital-Acquired MRSA within a healthcare facility in Saudi Arabia, using genomic epidemiology to investigate the genetic diversity, transmission patterns, and evolution of MRSA strains. By analyzing the genetic profiles of these bacteria, the research aims to provide insights into their spread and persistence in hospital settings. The findings will contribute to the development of targeted infection control strategies, helping to prevent the transmission of MRSA and improve overall hospital safety and patient care.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1175015"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1175015"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1175015","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1175015:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1175015","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1177197","name":"Characterization of nutritional and medicinal importance of truffle mushroom of Oman","displayTitle":"Characterization of nutritional and medicinal importance of truffle mushroom of Oman","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Not stated","leadOrganizations":["University of Nizwa"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/10/24; operational lifecycle is not asserted.","statusEvidenceDate":"2024-10-24","description":"This project aims to sequence and analyze the genome of the desert truffle, a highly valued gastronomic delicacy, in order to identify its genus and species and uncover its genetic structure and evolutionary background. The research will offer important insights into the biology and ecology of truffles, aiding efforts in truffle cultivation, conservation, and sustainable use. Additionally, the genomic data generated will contribute to the broader field of fungal genomics and deepen our understanding of symbiotic relationships in ecosystems.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1177197"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1177197"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1177197","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1177197:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1177197","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1181874","name":"Soil Metagenomics in Makkah, Saudi Arabia","displayTitle":"Soil Metagenomics in Makkah, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Maerua crassifolia","leadOrganizations":["King Abdulaziz University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/11/04; operational lifecycle is not asserted.","statusEvidenceDate":"2024-11-04","description":"The metagenomic whole-genome shotgun sequencing (mWGS) approach was employed to characterize the metagenome of the rhizosphere microbiome associated with Maerua crassifolia and its surrounding soil.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA1181874"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1181874"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1181874","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1181874:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1181874","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1181878","name":"Soil Metagenomics in Makkah, Saudi Arabia","displayTitle":"Soil Metagenomics in Makkah, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Maerua crassifolia","leadOrganizations":["King Abdulaziz University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/11/04; operational lifecycle is not asserted.","statusEvidenceDate":"2024-11-04","description":"The metagenomic whole-genome shotgun sequencing (mWGS) approach was employed to characterize the metagenome of the rhizosphere microbiome associated with Maerua crassifolia and its surrounding soil","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA1181878"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1181878"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1181878","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1181878:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1181878","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1185132","name":"Hyalomma dromedarii Raw sequence reads","displayTitle":"Hyalomma dromedarii Raw sequence reads","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Hyalomma dromedarii","leadOrganizations":["ANSES"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/11/12; operational lifecycle is not asserted.","statusEvidenceDate":"2024-11-12","description":"The camel tick, Hyalomma dromedarii, is a prominent ectoparasite in the Middle East and North Africa (MENA) region, critically impacting camel health and acting as a vector for tick-borne pathogens. Despite prior studies on its microbiota, the effects of geographic origin and gender on microbial community structure and functional stability remain poorly understood. Therefore, in this study, we characterized the bacterial microbiota of Hy. dromedarii ticks from camels in Tunisia and Saudi Arabia using 16S rRNA gene sequencing, microbial network analysis and metabolic pathway prediction. Our findings indicate a dominant presence of Francisella endosymbionts in Tunisian ticks, suggesting adaptive rolesof Hy. dromedarii ticks in arid ecosystems. Keystone taxa, particularly Staphylococcus and Corynebacterium, were identified as central to microbial network structure and resilience. Moreover, network robustness analyses demonstrated enhanced ecological stability in the Tunisian tick microbiota under perturbation, indicative of higher resilience to environmental fluctuations. Additionally, functional pathway predictions further revealed geographically distinct metabolic profiles between both groups (Tunisia vs. Saudi Arabia and males vs. females), underscoring environmental and biological influences on Hy. dromedarii microbiota assembly. These results provide insights into region-specific and gender-specific microbial adaptations and potential implications for pathogen transmission dynamics and vector resilience","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1185132"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1185132"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1185132","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1185132:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1185132","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1187828","name":"bacterial community composition with respiratory infectionSaudi Arabia","displayTitle":"bacterial community composition with respiratory infectionSaudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["king abdulaziz university"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/11/19; operational lifecycle is not asserted.","statusEvidenceDate":"2024-11-19","description":"This study examines the alterations in respiratory microbiota associated with diagnosed and undiagnosed respiratory infections from Saudi Arabia,","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1187828"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1187828"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1187828","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1187828:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1187828","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1188536","name":"The aim was to identify microorganisms and antibiotic-resistant microorganisms from seawater sample collected from Kuwait Bay in 2024.","displayTitle":"The aim was to identify microorganisms and antibiotic-resistant microorganisms from seawater sample collected from Kuwait Bay in 2024.","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Ectopseudomonas guguanensis; Pseudomonas aeruginosa","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/11/20; operational lifecycle is not asserted.","statusEvidenceDate":"2024-11-20","description":"The aim was to identify microorganisms and antibiotic-resistant microorganisms from seawater sample collected from Kuwait Bay in 2024.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1188536","PRJNA1188548"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1188536"},{"scheme":"BioProject","value":"PRJNA1188548"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1188536","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1188536:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1188536","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1188536:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1188548","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1188581","name":"Pseudomonas aeruginosa strain:KUKD3 Genome sequencing","displayTitle":"Pseudomonas aeruginosa strain:KUKD3 Genome sequencing","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Pseudomonas aeruginosa","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/11/20; operational lifecycle is not asserted.","statusEvidenceDate":"2024-11-20","description":"The aim was to identify microorganisms and antibiotic-resistant microorganisms from seawater sample collected from Kuwait Bay.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1188581"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1188581"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1188581","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1188581:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1188581","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1188806","name":"Symbiodiniaceae ITS2 UAE Global Search Raw sequence reads - DFG ATLAS PGAFF Global Search","displayTitle":"Symbiodiniaceae ITS2 UAE Global Search Raw sequence reads - DFG ATLAS PGAFF Global Search","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Symbiodiniaceae sp.","leadOrganizations":["Coral Global Search"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/11/21; operational lifecycle is not asserted.","statusEvidenceDate":"2024-11-21","description":"ITS2-based Symbiodiniaceae diversity of Persian/Arabian Gulf and Gulf of Oman","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1188806"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1188806"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1188806","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1188806:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1188806","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1189779","name":"Staphylococcus sp. KUGN1 Genome sequencing","displayTitle":"Staphylococcus sp. KUGN1 Genome sequencing","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Staphylococcus sp. KUGN1","leadOrganizations":["kuwait university"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/11/23; operational lifecycle is not asserted.","statusEvidenceDate":"2024-11-23","description":"environmental","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1189779"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1189779"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1189779","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1189779:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1189779","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1199673","name":"Falco peregrinus (Peregrine falcon) genome, bFalPer1, sequence data","displayTitle":"Falco peregrinus (Peregrine falcon) genome, bFalPer1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/12/17; operational lifecycle is not asserted.","statusEvidenceDate":"2024-12-17","description":"The peregrine falcon (Falco peregrinus) is a large species of falcons. Its breeding range spans all continents except Antarctica, and is considered the fastest member of the animal kingdom. This sample was procured by Farooq Omar Al-Ajli and used to generate a high-quality reference genome in a collaboration between Qatar Falcon Genome Project (QFGP) and Vertebrate Genomes Project (VGP). The project was coordinated by Farooq Al-Ajli as a part of large conservation study (Qatar Falcon Genome Project), and funded by KATARA Cultural Village and Al-Gannas Qatari Society, Qatar. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) by Farooq Omar Al-Ajli at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1199673"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1199673"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1199673","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1199673:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1199673","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1200230","name":"Strong seasonality of marine microbial communities in a shallow man-made lagoon in the United Arab Emirates, and first detection of the toxin domoic acid","displayTitle":"Strong seasonality of marine microbial communities in a shallow man-made lagoon in the United Arab Emirates, and first detection of the toxin domoic acid","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Neew York University Abu Dhabi"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/12/19; operational lifecycle is not asserted.","statusEvidenceDate":"2024-12-19","description":"The marine planktonic community (eukaryotic, bacterial and archaeal) has been little investigated in the Persian/Arabian Gulf (PAG); however, the composition and function of these microbial communities are critical for the healthy functioning of biogeochemical cycling and ecology of this subtropical ecosystem, which in the summer is the hottest marine body of water on Earth. This study explored the temporal changes in the planktonic community in a densely populated, semi-enclosed bay in the United Arab Emirates (UAE), in which seasonal succession of persistent phytoplankton blooms resulted in several beach closures. In this study, we surveyed the microbial community by analyzing 18S ribosomal RNA (rRNA) eukaryotic, 16S rRNA bacterial and archaeal gene sequences, alongside measuring environmental parameters over the course of a full annual cycle. We found strong temporal seasonality between temperate winter conditions and the extreme high temperatures and salinities of summer. Mirroring these seasonal changes, phytoplankton and bacterial diversity and community composition were significantly different in both winter and summer. Dinoflagellates dominated the phytoplankton community in terms of relative abundance of 18S rRNA, though microscopy revealed a higher biomass contribution from diatoms. We observed several toxin producing dinoflagellates and diatoms in the community composition and seasonal co-occurrence networks. Notably, during a Pseudo-nitzschia bloom, we detected the neurotoxin domoic acid, for the first time in the region, highlighting the need for understanding environmental and molecular drivers of toxin production in UAE coastal waters. This study provides a baseline for understanding how environmental and anthropogenic factors influence HABs and microbial dynamics in the Persian/Arabian Gulf.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1200230"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1200230"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1200230","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1200230:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1200230","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1203247","name":"QU_Oryx_E.coli is isolated from fecal samples of Qatari semi-wild Oryx.","displayTitle":"QU_Oryx_E.coli is isolated from fecal samples of Qatari semi-wild Oryx.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Escherichia coli","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/12/26; operational lifecycle is not asserted.","statusEvidenceDate":"2024-12-26","description":"QU_Oryx_E.coli is isolated from fecal samples of Qatari semi-wild Oryx.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1203247","PRJNA1203252"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1203247"},{"scheme":"BioProject","value":"PRJNA1203252"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1203247","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1203247:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1203247","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1203247:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1203252","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1203389","name":"Escherichia coli strain:QU_Oryx_32 | isolate:fecal sample Genome sequencing","displayTitle":"Escherichia coli strain:QU_Oryx_32 | isolate:fecal sample Genome sequencing","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Escherichia coli","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2024/12/27; 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operational lifecycle is not asserted.","statusEvidenceDate":"2024-12-29","description":"16sRNA metagenomic data for seven isolated sponge samples from the Red Sea at Saudi Arabia By Dr. Samah AbuZahrah","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1204080"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1204080"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1204080","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1204080:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1204080","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1207559","name":"Sequencing of 21 genomes (20 accessions + 1 male isolate) of Phoenix dactylifera from Saudi Arabia","displayTitle":"Sequencing of 21 genomes (20 accessions + 1 male isolate) of Phoenix dactylifera from Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Phoenix dactylifera","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/01/07; operational lifecycle is not asserted.","statusEvidenceDate":"2025-01-07","description":"Dates are a culturally and economically significant commodity, both locally and regionally. The overall goal of the fit date palm project is to gain a basic understanding of the genome biology, physiology and development of date palm that can be used to breed new varieties that will outperform existing varieties , while maintaining superior quality.Generating molecular and biotechnological tools for date palm provides the first step toward understanding and improving the mechanisms of adaptation to desert conditions. Establishing palms from a homogenous tissue culture to maintain pure lines will allow the preservation and improvement of local cultivars. This project builds multiple tools that will enable the establishment of robust date palm breeding programs in the KSA. This includes, Stable transformation protocol, Reducing the generation time, Obtaining and analyzing , high-quality genomic information, Developing methods for rapid sex determination.These are the first steps toward establishing date palm breeding in the KSA, to develop fast, fit palms. Furthermore, knowledge from date palm can be transferred to other crops, which will also contribute to improving desert agriculture.The Fast Fit Palms project is led by Professor Ikram Blilou.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1207559"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1207559"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1207559","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1207559:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1207559","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1207711","name":"Oman Surface Expressed Serpentinized Fluid Shotgun Metagenome Sequencing Assemblies","displayTitle":"Oman Surface Expressed Serpentinized Fluid Shotgun Metagenome Sequencing Assemblies","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"sediment metagenome","leadOrganizations":["Arizona State University"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/01/08; operational lifecycle is not asserted.","statusEvidenceDate":"2025-01-08","description":"Shotgun metagenome sequencing assemblies from microbial communities of sediments underlying surface-expressed serpentinized fluids of the Samail Ophiolite in Oman.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenomic assembly","Sequencing","Genome"],"accessionIds":["PRJNA1207711"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1207711"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1207711","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1207711:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1207711","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1209551","name":"Comparative Genomic Study of blaKPC-2-Carrying Multidrug-Resistant Klebsiella pneumoniae in the UAE","displayTitle":"Comparative Genomic Study of blaKPC-2-Carrying Multidrug-Resistant Klebsiella pneumoniae in the UAE","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["United Arab Emirates University"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/01/12; operational lifecycle is not asserted.","statusEvidenceDate":"2025-01-12","description":"The primary goal of the study was to conduct comprehensive whole-genome sequencing (WGS) of three multidrug-resistant (MDR) Klebsiella pneumoniae strains producing KPC (Klebsiella pneumoniae carbapenemase), each belonging to distinct sequence types (STs). 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The findings from this study will be instrumental in developing effective strategies to control and prevent the spread of this pathogen in hospitals, ultimately enhancing patient safety and public health","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1230878"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1230878"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1230878","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1230878:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1230878","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1231772","name":"Impact of Physical Activity on Gut Microbiome of Lab Rats with Fat Diet Induced Obesity","displayTitle":"Impact of Physical Activity on Gut Microbiome of Lab Rats with Fat Diet Induced Obesity","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/03/05; operational lifecycle is not asserted.","statusEvidenceDate":"2025-03-05","description":"This study investigates how diet and exercise influence gut microbial composition in lab rats. Obesity, a major risk factor for metabolic disorders, is closely linked to gut microbiota composition. While diet's role in shaping gut microbiota is well understood, the combined impact of exercise and diet remains underexplored. This research examines microbial diversity, taxonomy, and correlations with exercise intensity and weight. Sixty-four rats were divided into six groups based on dietary interventions and exercise regimens.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1231772"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1231772"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1231772","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1231772:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1231772","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1232128","name":"Klebsiella pneumoniae OMAN strains and mutants","displayTitle":"Klebsiella pneumoniae OMAN strains and mutants","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Venatorx Pharmaceuticals"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/03/05; operational lifecycle is not asserted.","statusEvidenceDate":"2025-03-05","description":"Sequences of Klebsiella pneumoniae OMAN 8 and 19 strains as well as the mutants selected by cefepime-taniborbactam","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1232128"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1232128"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1232128","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1232128:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1232128","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1233615","name":"Expression data of exosomal miRNAs extracted from plasma [Affymetrix miRNA 4.0]","displayTitle":"Expression data of exosomal miRNAs extracted from plasma [Affymetrix miRNA 4.0]","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Department of Pharmaceutical Sciences, College of Pharmacy, QU Health, Qatar University"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/03/08; operational lifecycle is not asserted.","statusEvidenceDate":"2025-03-08","description":"Exosomal miRNAs have emerged as promising disease biomarkers. We aim to investigate the potential of exosomal miRNAs to assist with AIS clinical diagnosis. In the present research, we used the Affymetrix Genechip miRNA 4.0 Array to investgate the profiles of differentially expressed miRNAs (DEMs) in the exosomes of peripheral blood plasma. As a result, exosomal miRNA profiling yielded a total of 05 DEMs between the AIS (Acute Ischemic Stroke) patients and controls. Overall design: Peripheral blood samples of 5 AIS patients and 5 healthy individuals were collected for the for exosomal miRNAs extraction and hybridization on Affymetrix microarrays. In AIS group samples selected were: AIS-1, AIS-2, AIS-3, AIS-4 and AIS-5. Meanwhile, 5 healthy individuals were selected as controls: Control-1, Control-2, Control-3, Control-4 and Control-5.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Array","Transcriptome"],"accessionIds":["PRJNA1233615"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1233615"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1233615","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1233615:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1233615","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1239551","name":"Acinetobacter baumannii strain:AB-JZ01 Genome sequencing","displayTitle":"Acinetobacter baumannii strain:AB-JZ01 Genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Acinetobacter baumannii","leadOrganizations":["The Regional Laboratory, Jazan, Saudi Arabia"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/03/20; operational lifecycle is not asserted.","statusEvidenceDate":"2025-03-20","description":"Acinetobacter baumannii AB-JZ01 is a multidrug resistant isolate which associated with nosocomial infection in Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1239551"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1239551"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1239551","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1239551:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1239551","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1239927","name":"WGS of A. baumannii in Jazan, Saudi Arabia","displayTitle":"WGS of A. baumannii in Jazan, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["The Regional Laboratory, Jazan, Saudi Arabia"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/03/20; operational lifecycle is not asserted.","statusEvidenceDate":"2025-03-20","description":"This work addresses the critical issue of the global spread of carbapenem-resistant A.baumannii (CRAB), driven primarily by the International high-risk, particularly the sequencetype 2 (ST2) clone. Our findings highlight the urgent need for continuous monitoring andtargeted interventions to control the spread of these high-risk clones. We believe that ourwork provides valuable insights into the epidemiology and genomic characteristics of CRABin the Jazan region, which can inform public health strategies and improve patient outcomes.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1239927"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1239927"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1239927","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1239927:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1239927","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1240580","name":"E. coli and Klebsiella pneumoniae isolated from patients with complicated UTI","displayTitle":"E. coli and Klebsiella pneumoniae isolated from patients with complicated UTI","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Sultan Qaboos University"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/03/22; operational lifecycle is not asserted.","statusEvidenceDate":"2025-03-22","description":"Mapping the local etiology and antibiogram of common pathogens causing complicated urinary tract infection (cUTI) is important for promoting evidence based antimicrobial prescribing. Evaluating the prevalence of extended spectrum beta lactamases (ESBL), AmpC beta lactamases (AmpC) and carbapenemase producing Enterobacterales (CPE), is equally important as it informs treatment guidelines and empiric management. Whole genome sequencing (WGS) enhances antimicrobial resistance (AMR) surveillance by complementing phenotypic antimicrobial susceptibility testing, offering deeper insights into resistance mechanisms, transmission, and evolution. Integrating it into routine AMR monitoring can significantly improve global efforts to combat antimicrobial resistance. Methods: Antimicrobial susceptibility profile of isolates from cUTI were collected from patients presenting with Sultan Qaboos University Hospital, Muscat and Suhar Hospital, Suhar, Oman. Automated systems as well as manual methods were used for detection of ESBL and CPE. ESBLs, AmpC beta-lactamases, and CPE were further detected by manual methods: double disc synergy test for ESBL; disc approximation assay and D69C AmpC detection set for AmpC and CIM/mCIM and KPC/IMP/NDM/VIM/OXA-48 Combo test kit for CPE. WGS was carried out in 11 FOX resistant E. coli and 22 K. pneumoniae CPE isolates with varying susceptibilities to identify circulating clades, AMR genes and plasmids. Bioinformatic analysis was performed using online tools.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1240580"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1240580"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1240580","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1240580:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1240580","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1240816","name":"A genomic epidemiology study of hospital-acquired Acinetobacter baumannii population dynamics within healthcare facilities in Saudi Arabia.","displayTitle":"A genomic epidemiology study of hospital-acquired Acinetobacter baumannii population dynamics within healthcare facilities in Saudi Arabia.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/03/23; operational lifecycle is not asserted.","statusEvidenceDate":"2025-03-23","description":"This study explores the population dynamics of hospital-acquired Acinetobacter baumannii within healthcare facilities in Saudi Arabia, employing genomic epidemiology to examine its genetic diversity, transmission routes, and evolutionary patterns. Through detailed analysis of bacterial genomes, the research seeks to uncover how these strains spread and persist in clinical environments. The outcomes aim to support the design of targeted infection control measures, ultimately helping to curb the transmission of A. baumannii and enhance patient safety and healthcare quality.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1240816"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1240816"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1240816","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1240816:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1240816","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1247017","name":"Bacillus velezensis strain:BV-22 Genome sequencing","displayTitle":"Bacillus velezensis strain:BV-22 Genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Bacillus velezensis","leadOrganizations":["King Saud University"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/04/06; operational lifecycle is not asserted.","statusEvidenceDate":"2025-04-06","description":"Whole genome sequence of Bacillus velezensis isolated from Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1247017"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1247017"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1247017","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1247017:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1247017","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1251100","name":"Bacteria Metagenome","displayTitle":"Bacteria Metagenome","aliases":[],"countries":["Bahrain"],"regionLabel":"Bahrain","geographicScope":"Bahrain connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Bacteria","leadOrganizations":["University of Bahrain"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/04/15; operational lifecycle is not asserted.","statusEvidenceDate":"2025-04-15","description":"This study explores the microbiome diversity in raw milk from different animal sources using a culture-independent sequencing approach. Deep metagenomic sequencing enables the detection of both beneficial probiotic and harmful pathogenic bacteria. Additionally, the research highlights antibiotic resistance in livestock and emphasizes the need for regulatory monitoring of antibiotic usage.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA1251100"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1251100"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1251100","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1251100:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1251100","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1255389","name":"Carbapenemase producing Enterobacterales from Qatar and Gaza area in Sidra Medicine Raw sequence reads","displayTitle":"Carbapenemase producing Enterobacterales from Qatar and Gaza area in Sidra Medicine Raw sequence reads","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["National Centre for Infectious Diseases"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/04/25; operational lifecycle is not asserted.","statusEvidenceDate":"2025-04-25","description":"To compare the colonization rates and characteristics of carbapenemase-producing Enterobacterales (CPE) in war-affected Palestinian children in the Gaza Strip with those of the local pediatric population at Sidra Medicine in Doha.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1255389"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1255389"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1255389","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1255389:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1255389","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1257324","name":"Emergence of livestock-associated MRSA in the Egyptian Nile Delta that carry the exfoliative toxin gene etA","displayTitle":"Emergence of livestock-associated MRSA in the Egyptian Nile Delta that carry the exfoliative toxin gene etA","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Leibniz Institute of Photonic Technology (IPHT)"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/04/30; operational lifecycle is not asserted.","statusEvidenceDate":"2025-04-30","description":"Staphylococcus aureus is a common opportunistic pathogen. Methicillin-resistant strains, MRSA, carry SCCmec elements that include beta-lactam resistance genes mecA/mecC. One globally common lineage, Clonal Complex (CC) 15 failed to evolve MRSA strains until, in 2016, CC15-MRSA were described from Saudi Arabia that carried a fusidic acid resistance gene, fusC, within a SCCmec V element. Henceforth, this strain spread across Gulf states and Egypt infecting or colonizing both, humans and livestock. DNA-microarray-based typing was performed on 134 MRSA isolates collected from livestock and farmers in the Nile Delta region of Egypt in 2022. Twenty-eight out of those 134 isolates from both, humans and milk samples of small ruminants, were assigned to CC15-MRSA-[V+fusC]. Thus, this strain was the second most common MRSA strain, behind CC88-MRSA-[IV+fusC]. Twenty out of those 28 isolates harboured the gene etA, encoding exfoliative toxin A associated with Staphylococcal scalded skin syndrome (SSSS). This toxin was previously observed in CC15, but not in CC15-MRSA. Hence, two isolates were sequenced applying Oxford Nanopore Technology. This confirmed the presence of the etA gene on a sufB-integrating prophage. Based on gene content and on electron microscopic morphology after mitomycin C induction, it was assigned to the genus Phietavirus. In addition to SCCmec-borne mecA, fusC and aacA-aphD (encoding beta-lactam, fusidic acid and gentamicin/tobramycin resistance), they also harboured resistance genes aadD, lnu(A), tet(K) (for tobramycin, lincosamide and tetracycline resistance) as well as beta-lactamase and cadmium resistance operons on a plasmid. They also showed a conspicuous recombination affecting the hsdS/M operon associated with the set/ssl-locus. This, and the identity of their composite SCCmec-[V+fusC] element, suggest descent from the etA-negative strain previously observed in Gulf states and Egypt. In conclusion, we describe a novel variant of a CC15 livestock-associated MRSA strain from Egypt. Because of the presence of etA, it might be of increased virulence to humans, especially to new-borns who might also be exposed to contaminated milk. Hence, we urgently recommend surveillance of SSSS/Ritters disease in Egypt or in people with relevant travel history.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1257324"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1257324"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1257324","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1257324:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1257324","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1258391","name":"Transcriptome of Cistanche phelypaea Flower, Stem and Root","displayTitle":"Transcriptome of Cistanche phelypaea Flower, Stem and Root","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Modern Sciences"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/05/03; operational lifecycle is not asserted.","statusEvidenceDate":"2025-05-03","description":"First molecular study on the rare Cistanche phelypaea in the United Arab Emirates region.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1258391"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1258391"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1258391","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1258391:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1258391","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1260419","name":"Bacillus sp. alh8 Genome sequencing","displayTitle":"Bacillus sp. alh8 Genome sequencing","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait institute for scientific research"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/05/08; 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Abnormal overexpression of human antimicrobial peptide LL-37 is a hallmark of rosacea. However, its significance in the rosacea pathogenesis is not fully understood. We sought to understand the molecular mechanisms of LL-37-mediated rosacea-like inflammation in an in-vitro model of normal human epidermal keratinocytes. Transcriptome profiling of LL-37-treated keratinocytes identified signatures of interferon (IFN)-stimulating genes (ISGs) such as CXCL10, IFIT2, RSAD2 and CXCL11 among the top upregulated differentially expressed genes. Gene ontogeny (GO) enrichment of biological processes revealed activation of cellular response to molecules of bacterial origin, response to chemokines, and cytokine mediated signaling pathways. While KEGG enrichment analysis revealed the activation of TNF signaling, IL-17 signaling, NF-kB signaling and chemokine signaling among the most significant pathways.  Remarkably, T cell recruiting chemokine CXCL10 turns out to be the most abundant inflammatory mediator overexpressed upon LL-37 exposure. Mechanistically, LL-37 induced CXCL10 production relied on JAK-1/STAT-1 signaling pathway. In summary, our findings provide a crucial link to keratinocyte: T cell crosstalk and blockade of CXCL10:CXCR3 axis or JAK-1/STAT-1 pathways can be an effective anti-inflammatory strategy to reduce rosacea inflammation by restricting pathogenic T cells infiltration. Overall design: Primary keratinocytes (NHEK) from three healthy donors were stimulated with or without LL-37 in a 6-well collagen 1-coated culture plate for 6-hours. Cells were lysed and RNA was isolated using RNAeasy Mini kit (Qiagen). RNA was further processed for Affymetrix microarray.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Array","Transcriptome"],"accessionIds":["PRJNA1294752"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1294752"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1294752","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1294752:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1294752","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1294809","name":"Sporosarcina sp. 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AD_1 demonstrates notable bioremediation potential, particularly in degrading pharmaceutical and endocrine-disrupting compounds such as venlafaxine and imidacloprid under aerobic conditions. This strain was selected for whole genome sequencing due to its high degradative capacity and genomic novelty.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1294809"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1294809"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1294809","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1294809:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1294809","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1294993","name":"Al-Ula date palm project","displayTitle":"Al-Ula date palm project","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["New York University Abu Dhabi","Center for Desert Agriculture - King Abdullah University of Science and Technology (KAUST)","Royal Commission for AlUla"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/07/22; operational lifecycle is not asserted.","statusEvidenceDate":"2025-07-22","description":"Study of the genetic diversity of date palms in al-Ula oasis, Saudi Arabia. This work was funded by the French Agency for AlUla Development (AFALULA) with his Saudi partner the Royal Commission for AlUla (RCU) through a grant awarded to Vincent Battesti and Muriel Gros-Balthazard (project al-Ula DPA: Ethnographic, genetic, and morphometric analyses of the date palm agrobiodiversity in al-Ula oasis).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1294993"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1294993"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1294993","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1294993:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1294993","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1295575","name":"Klebsiella pneumoniae strain:KP-JZ177 Genome sequencing","displayTitle":"Klebsiella pneumoniae strain:KP-JZ177 Genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Klebsiella pneumoniae","leadOrganizations":["The Regional Laboratory, Jazan, Saudi Arabia"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/07/23; 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All isolates underwent short-read Illumina whole-genome sequencing to get antimicrobial resistance profiles, sequence types, virulence gene patterns.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1377314"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1377314"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1377314","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1377314:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1377314","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna138447","name":"Expression data from MCF7 cell line after silencing of Estrogen receptor","displayTitle":"Expression data from MCF7 cell line after silencing of Estrogen receptor","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Homo sapiens","leadOrganizations":["Molecular pathology, Pathology, Kuwait University"],"partnerOrganizations":[],"startYear":2011,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2011/05/01; operational lifecycle is not asserted.","statusEvidenceDate":"2011-05-01","description":"We propose the hypothesis that loss of estrogen receptor function which leads to endocrine resistance in breast cancer, also results in de-differentiation from an epithelial to a mesenchymal phenotype that is responsible for increased aggressiveness and metastatic propensity. siRNA mediated silencing of the estrogen receptor in MCF7 breast cancer cells resulted in estrogen/tamoxifen resistant cells (pII) with altered morphology, increased motility with rearrangement and switch from an actin to a vimentin based cytoskeleton, and ability to invade simulated components of the extracellular matrix. Phenotypic profiling using an Affymetrix Human Genome U133 plus 2.0 GeneChip indicated fold changes ≥ 3 in approximately 2500 identifiable unique sequences, with about 1270 of these being up-regulated in pII cells. Changes were associated with genes whose products are involved in cell motility, loss of cellular adhesion and interaction with the extracellular matrix. Selective analysis of the data also showed a shift from luminal to basal cell markers and increased expression of a wide spectrum of genes normally associated with mesenchymal characteristics, with consequent loss of epithelial specific markers. Over-expression of several peptide growth factors and their receptors are indicative of an increased contribution to the higher proliferative rates of pII cells as well as aiding their potential for metastatic activity. Signalling molecules that have been identified as key transcriptional drivers of epithelial to mesenchymal transition were also found to be elevated in pII cells. We suggest that these data support our hypothesis that induced loss of estrogen receptor in previously antiestrogen sensitive cells is a trigger for the concomitant loss of endocrine dependence and onset of a series of possibly parallel events that changes the cell from an epithelial to a mesenchymal type. Inhibition of this transition through targeting of specific mediators may be a useful supplementary strategy to circumvent the effects of loss of endocrine sensitivity. We used microarrays to detail the global programme of gene expression underlying Epithelial to mesenchymal transition and identified distinct classes of regulated genes during this process. Overall design: MCF7 cell line was selected before and after (PII) silencing of Estrogen receptor for RNA extraction and hybridization on Affymetrix expression microarrays.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Array","Transcriptome"],"accessionIds":["PRJNA138447"],"identifiers":[{"scheme":"BioProject","value":"PRJNA138447"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA138447","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna138447:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA138447","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1392042","name":"Effects of Low pH and Elevated Temperature on the Structural and Functional Diversity of Microbes in Submerged and Intertidal Biofilms","displayTitle":"Effects of Low pH and Elevated Temperature on the Structural and Functional Diversity of Microbes in Submerged and Intertidal Biofilms","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait University","Mariam Almatrouk"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2025/12/21; operational lifecycle is not asserted.","statusEvidenceDate":"2025-12-21","description":"The study evaluates how elevated temperature and reduced pH influence the biogeochemical dynamics within marine biofilms in the Arabian Gulf, one of the world's most extreme marine environments. Through controlled microcosm experiments, along with high throughput metagenomic sequencings, the study investigates how climate driven stressors cause a shift in microbial diversity, functional genes, and ecosystem processes. The findings provide novel insights into the coupling of physical drivers and biogeochemical responses in the Arabian Gulf, contributing to the understanding of ecosystem resilience and vulnerability under climate change.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1392042"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1392042"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1392042","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1392042:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1392042","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1398948","name":"Antimicrobial Resistance and Genomic Characterization of Four mcr-1-Harboring Foodborne Salmonella Isolates Recov-ered from Poultry in Saudi Arabia","displayTitle":"Antimicrobial Resistance and Genomic Characterization of Four mcr-1-Harboring Foodborne Salmonella Isolates Recov-ered from Poultry in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Saudi Food and Drug Authority"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/01/06; operational lifecycle is not asserted.","statusEvidenceDate":"2026-01-06","description":"Antimicrobial Resistance and Genomic Characterization of Four mcr-1-Harboring Foodborne Salmonella Isolates Recov-ered from Poultry in Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1398948"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1398948"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1398948","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1398948:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1398948","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1402053","name":"Whole Genome Sequencing of Carbapenems Resistant Acinetobacter baumannii in Saudi Arabia","displayTitle":"Whole Genome Sequencing of Carbapenems Resistant Acinetobacter baumannii in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdulaziz City for Science and Technology"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/01/13; operational lifecycle is not asserted.","statusEvidenceDate":"2026-01-13","description":"An Integrated Phenotype and WGS Pipeline for Carbapenem-Resistant Acinetobacter baumannii. Quantifying AST Discordance and Resolving Local Transmission Micro-clusters in Makkah and Riyadh, Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1402053"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1402053"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1402053","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1402053:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1402053","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1404447","name":"Whole-genome sequencing of ESBL- and carbapenemase-producing Gram-negative bacteria from an aquarium in the United Arab Emirates","displayTitle":"Whole-genome sequencing of ESBL- and carbapenemase-producing Gram-negative bacteria from an aquarium in the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Bacteria","leadOrganizations":["United Arab Emirates University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/01/17; operational lifecycle is not asserted.","statusEvidenceDate":"2026-01-17","description":"This project investigates the prevalence and genetic basis of extended-spectrum beta-lactamase (ESBL)-producing and carbapenemase-producing Gram-negative bacteria isolated from an aquarium environment in the United Arab Emirates. Cultured bacterial isolates recovered from animals and associated environmental samples were subjected to whole-genome sequencing to characterize antimicrobial resistance determinants and genomic diversity. The generated sequence data support surveillance and risk assessment of antimicrobial resistance in aquatic and animal-associated environments.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1404447"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1404447"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1404447","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1404447:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1404447","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1404647","name":"Salinity Driven Endophytic Microbiome Profiling of Salvadora persica Leaves and Roots Using 16S rRNA Amplicon Sequencing","displayTitle":"Salinity Driven Endophytic Microbiome Profiling of Salvadora persica Leaves and Roots Using 16S rRNA Amplicon Sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["University of Jeddah"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/01/17; operational lifecycle is not asserted.","statusEvidenceDate":"2026-01-17","description":"This study investigates how plant compartment shapes endophytic bacterial community assembly in the halophytic shrub Salvadora persica cultivated under seawater (saline water) irrigation in a saline desert environment in western Saudi Arabia. Leaf and root tissues were sampled from healthy mature shrubs at Arak Farm (Rabigh Governorate, Makkah Region) and profiled using high-throughput 16S rRNA gene amplicon sequencing targeting the V3-V4 region. Amplicon sequence variants (ASVs) were inferred using a DADA2-based workflow, and taxonomic and diversity analyses were performed to compare bacterial richness, phylogenetic diversity, and community structure between leaves and roots. The dataset provides a compartment-resolved baseline for understanding plant-microbe interactions under salinity stress and supports future functional and metagenomic studies aimed at identifying microbial traits contributing to stress tolerance and ecological adaptation in desert agro-ecosystems.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Targeted Locus (Loci)","Sequencing","Genome"],"accessionIds":["PRJNA1404647"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1404647"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1404647","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1404647:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1404647","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1406732","name":"Sequencing of outbreak adapted Candidozyma auris isolates from Kuwait","displayTitle":"Sequencing of outbreak adapted Candidozyma auris isolates from Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["St. Jude Children's Research Hospital"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/01/22; operational lifecycle is not asserted.","statusEvidenceDate":"2026-01-22","description":"This study leveraged a large collection of C. auris isolates from multi-facility clinical outbreaks within the same urban area to identify genomic patho-adaptations that promote persistence and dissemination in the healthcare environment.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1406732"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1406732"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1406732","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1406732:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1406732","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1414257","name":"Kocuria sp. U4B Genome sequencing","displayTitle":"Kocuria sp. U4B Genome sequencing","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Kocuria sp. U4B","leadOrganizations":["UAE University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/01/26; operational lifecycle is not asserted.","statusEvidenceDate":"2026-01-26","description":"The novel bacterium Kocuria strain U4B sp. nov., isolated from the seeds of Citrullus colocynthis (desert melon) in the United Arab Emirates. To unveil the genetic basis of endophytic lifestyle of this bacterium under arid conditions whole-genome sequencing was performed.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1414257"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1414257"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1414257","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1414257:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1414257","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1414479","name":"Extended-Spectrum Beta-Lactamase-Producing Escherichia coli at a United Arab Emirates Urban Zoo","displayTitle":"Extended-Spectrum Beta-Lactamase-Producing Escherichia coli at a United Arab Emirates Urban Zoo","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Solu Healthcare Oy"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/01/26; operational lifecycle is not asserted.","statusEvidenceDate":"2026-01-26","description":"This study investigated the occurrence, phenotypic resistance patterns, and genomic characteristics of extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli in clinically healthy captive ungulates at Al Ain Zoo, one of the largest urban zoological institutions in the United Arab Emirates (UAE).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1414479"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1414479"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1414479","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1414479:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1414479","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1417587","name":"Streptococcus pneumoniae Raw sequence reads","displayTitle":"Streptococcus pneumoniae Raw sequence reads","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Streptococcus pneumoniae","leadOrganizations":["Mohammed Bin Rashid University of Medicine and Health Sciences"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/02/02; operational lifecycle is not asserted.","statusEvidenceDate":"2026-02-02","description":"We performed whole-genome sequencing of 250 S. pneumoniae isolates collected in the UAE and Kuwait and analysed population structure using Global Pneumococcal Sequence Clusters (GPSCs). 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operational lifecycle is not asserted.","statusEvidenceDate":"2026-03-16","description":"Occurrence, Diversity, and Genomic Characterization of Non-typhoidal Salmonella and Enterococcus spp. In Conservation-Priority Captive Ungulates in the United Arab Emirates","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1438090"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1438090"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1438090","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1438090:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1438090","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1444687","name":"Granulicatella adiacens strain:G2025 Genome sequencing","displayTitle":"Granulicatella adiacens strain:G2025 Genome sequencing","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Granulicatella adiacens","leadOrganizations":["kuwait university"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/03/29; 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operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-02","description":"The scaled pigeon (Patagioenas speciosa) is a large New World tropical dove. 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Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1447603","PRJNA1447604"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1447603"},{"scheme":"BioProject","value":"PRJNA1447604"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447603","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1447603:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447603","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1447603:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447604","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1447606","name":"The yellow-eyed stock dove (Columba eversmanni) is a member of the family Columbidae (doves and pigeons).","displayTitle":"The yellow-eyed stock dove (Columba eversmanni) is a member of the family Columbidae (doves and pigeons).","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Columba eversmanni","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/02; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-02","description":"The yellow-eyed stock dove (Columba eversmanni) is a member of the family Columbidae (doves and pigeons). It breeds in southern Kazakhstan, Uzbekistan, Turkmenistan, Tajikistan, Kyrgyzstan, Afghanistan, north-east Iran and extreme north-west China (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. 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It is a common species of Southeast Asia, found from Myanmar, Thailand, and Vietnam south through to the major islands of Indonesia and the Philippines (where it is called \"punay\") (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. 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Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1447618","PRJNA1447619"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1447618"},{"scheme":"BioProject","value":"PRJNA1447619"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447618","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1447618:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447618","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1447618:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447619","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1447620","name":"The scaly-naped pigeon (Patagioenas squamosa), also known as the red-necked pigeon, is a bird belonging to the family Columbidae.","displayTitle":"The scaly-naped pigeon (Patagioenas squamosa), also known as the red-necked pigeon, is a bird belonging to the family Columbidae.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Patagioenas squamosa","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/02; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-02","description":"The scaly-naped pigeon (Patagioenas squamosa), also known as the red-necked pigeon, is a bird belonging to the family Columbidae. The species occurs throughout the Caribbean (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. 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With its relatives it represents an evolutionary radiation extending through most of the warm-temperate to tropical Americas. Grey-hued birds, even their males generally lack iridescent display plumage, although the present species has some coppery gloss on the nape (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1447622","PRJNA1447623"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1447622"},{"scheme":"BioProject","value":"PRJNA1447623"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447622","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1447622:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447622","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1447622:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447623","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1447683","name":"The white-winged pigeon (Patagioenas albipennis) is a columbiform bird taxon of the genus Patagioenas that inhabits valleys and ravines in mountainous areas of central-west South America (translated from Spanish Wikipedia entry).","displayTitle":"The white-winged pigeon (Patagioenas albipennis) is a columbiform bird taxon of the genus Patagioenas that inhabits valleys and ravines in mountainous areas of central-west…","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Patagioenas maculosa albipennis","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/02; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-02","description":"The white-winged pigeon (Patagioenas albipennis) is a columbiform bird taxon of the genus Patagioenas that inhabits valleys and ravines in mountainous areas of central-west South America (translated from Spanish Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco. Assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1447683","PRJNA1447684"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1447683"},{"scheme":"BioProject","value":"PRJNA1447684"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447683","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1447683:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447683","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1447683:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1447684","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1448077","name":"The West Peruvian dove (Zenaida meloda) is a species of dove in the genus Zenaida.","displayTitle":"The West Peruvian dove (Zenaida meloda) is a species of dove in the genus Zenaida.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Zenaida meloda","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/03; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-03","description":"The West Peruvian dove (Zenaida meloda) is a species of dove in the genus Zenaida. It can be found in desert lowlands and foothills in many open and semi-open habitats (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1448077","PRJNA1448078"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1448077"},{"scheme":"BioProject","value":"PRJNA1448078"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448077","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1448077:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448077","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1448077:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448078","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1448079","name":"The mourning dove (Zenaida macroura) is a member of the dove family, Columbidae.","displayTitle":"The mourning dove (Zenaida macroura) is a member of the dove family, Columbidae.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Zenaida macroura","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/03; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-03","description":"The mourning dove (Zenaida macroura) is a member of the dove family, Columbidae. It is one of the most abundant and widespread North American birds and a popular gamebird, with more than 20 million birds (up to 70 million in some years) shot annually in the U.S., both for sport and meat (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi and Erick Duarte of the VGL.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1448079","PRJNA1448080"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1448079"},{"scheme":"BioProject","value":"PRJNA1448080"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448079","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1448079:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448079","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1448079:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448080","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1448081","name":"The Namaqua dove (Oena capensis) is a very small species of pigeon.","displayTitle":"The Namaqua dove (Oena capensis) is a very small species of pigeon.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Oena capensis","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/03; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-03","description":"The Namaqua dove (Oena capensis) is a very small species of pigeon. It is the only species in the genus Oena. It is found over much of Sub-Saharan Africa as well as Arabia and Madagascar (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1448081","PRJNA1448082","PRJNA1037231","PRJNA489243","PRJNA1493220"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1448081"},{"scheme":"BioProject","value":"PRJNA1448082"},{"scheme":"BioProject","value":"PRJNA1037231"},{"scheme":"BioProject","value":"PRJNA489243"},{"scheme":"BioProject","value":"PRJNA1493220"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448081","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1448081:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448081","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1448081:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448082","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1448083","name":"The eastern bronze-naped pigeon (Columba delegorguei), also known as Delegorgue's pigeon, is a species of bird in the family Columbidae.","displayTitle":"The eastern bronze-naped pigeon (Columba delegorguei), also known as Delegorgue's pigeon, is a species of bird in the family Columbidae.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Columba delegorguei","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/03; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-03","description":"The eastern bronze-naped pigeon (Columba delegorguei), also known as Delegorgue's pigeon, is a species of bird in the family Columbidae. It is found in Angola, Kenya, Malawi, Mozambique, South Africa, South Sudan, Tanzania, Uganda, Zambia, and Zimbabwe (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1448083","PRJNA1448084"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1448083"},{"scheme":"BioProject","value":"PRJNA1448084"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448083","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1448083:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448083","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1448083:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448084","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1448085","name":"The white-crowned pigeon (Patagioenas leucocephala) is a fruit and seed-eating species of bird in the dove and pigeon family Columbidae.","displayTitle":"The white-crowned pigeon (Patagioenas leucocephala) is a fruit and seed-eating species of bird in the dove and pigeon family Columbidae.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Patagioenas leucocephala","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/03; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-03","description":"The white-crowned pigeon (Patagioenas leucocephala) is a fruit and seed-eating species of bird in the dove and pigeon family Columbidae. It is found primarily in the Caribbean (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1448085","PRJNA1448086"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1448085"},{"scheme":"BioProject","value":"PRJNA1448086"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448085","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1448085:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448085","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1448085:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448086","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1448087","name":"The Santa Cruz ground dove (Pampusana sanctaecrucis) is a species of bird in the family Columbidae.","displayTitle":"The Santa Cruz ground dove (Pampusana sanctaecrucis) is a species of bird in the family Columbidae.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Pampusana sanctaecrucis","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/03; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-03","description":"The Santa Cruz ground dove (Pampusana sanctaecrucis) is a species of bird in the family Columbidae. It is found in the southern Solomon Islands and Vanuatu. Its natural habitat is subtropical or tropical moist lowland forests. It is threatened by habitat loss (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1448087","PRJNA1448088"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1448087"},{"scheme":"BioProject","value":"PRJNA1448088"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448087","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1448087:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448087","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1448087:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1448088","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1449514","name":"Pseudomonas sp. FA-1 Genome sequencing","displayTitle":"Pseudomonas sp. FA-1 Genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Pseudomonas sp. FA-1","leadOrganizations":["King Saud University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/06; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-06","description":"Whole genome sequencing of a tick-associated Pseudomonas sp. isolated from Hyalomma dromedarii ticks collected from camels at Hail Province, Saudi Arabia. Average nucleotide identity analysis (87.5% to the closest relative, P. guariconensis type strain LMG 27394) and digital DNA-DNA hybridization (dDDH 32.9%) indicate this isolate represents a potentially novel genomospecies within the P. putida group. The genome was assembled using SPAdes from Illumina paired-end reads, yielding a 5.1 Mb draft genome (38 contigs at 500 bp or greater, N50 363 kb, GC 63.75%). Annotation by Prokka identified 4,541 protein-coding genes, 77 tRNAs, and 5 rRNAs. AMR screening detected only intrinsic efflux pump genes (MexAB-OprM, MexCD-OprJ, MexEF-OprN) with no acquired resistance determinants. This project supports characterization of tick-associated bacteria and antimicrobial resistance surveillance in arthropod vectors from Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1449514"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1449514"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1449514","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1449514:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1449514","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1456569","name":"Stenotrophomonas maltophilia Genome sequencing","displayTitle":"Stenotrophomonas maltophilia Genome sequencing","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Stenotrophomonas maltophilia","leadOrganizations":["College of Medicine and Health Sciences, Sultan Qaboos University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/04/22; operational lifecycle is not asserted.","statusEvidenceDate":"2026-04-22","description":"Stenotrophomonas maltophilia has emerged as an opportunistic pathogen causing high rates of morbidities and mortalities worldwide. It is characterized by a high ability to survive and thrive on different biotic and abiotic surfaces. It is resistant to most available antibiotics due to its intrinsic resistance, leaving only some antibacterial agents as possible therapeutic options, which is further reduced by acquired mechanisms of antimicrobial resistance . Studies focusing on the molecular characterization of its resistance and virulence are scarce in Oman. This study aims to genomically characterize Stenotrophomonas maltophilia strains in Sultan Qaboos University Hospital (SQUH) using Whole Genome Sequencing (WGS).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1456569"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1456569"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1456569","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1456569:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1456569","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1461349","name":"First reported characterization of the skin microbiome of stranded Dugong dugon from the coastal habitats in the Arabian Gulf: a baseline study using full-length 16S rRNA gene sequencing","displayTitle":"First reported characterization of the skin microbiome of stranded Dugong dugon from the coastal habitats in the Arabian Gulf: a baseline study using full-length 16S rRNA gene…","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/05/03; operational lifecycle is not asserted.","statusEvidenceDate":"2026-05-03","description":"This study reports the first characterization of the skin microbiome of the marine mammal Dugong dugon (order Sirenia) using full-length 16S rRNA gene sequencing. Skin samples were collected from three stranded individuals along ecologically distinct coastal regions of Qatar (Khor Al Adaid, Dukhan, and Fuwayrit). Sequencing was performed using Oxford Nanopore Technologies (ONT) to achieve species-level taxonomic resolution. The dataset reveals distinct microbial community structures across individuals, with no shared core microbiome, and highlights the influence of environmental and ecological factors on skin-associated microbial composition. This dataset provides a baseline reference for future microbiome and conservation studies in dugongs.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1461349"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1461349"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1461349","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1461349:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1461349","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1461865","name":"Impact of TWW on Soil microbial community","displayTitle":"Impact of TWW on Soil microbial community","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"soil metagenome","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/05/04; operational lifecycle is not asserted.","statusEvidenceDate":"2026-05-04","description":"Soil sample of turfgrass ecosystem that irrigated with different water: TWW (long term), TWW (short term), and regular water.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA1461865"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1461865"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1461865","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1461865:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1461865","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1463121","name":"Genome assembly of Halospirulina saudiensis from the KSA Living Library","displayTitle":"Genome assembly of Halospirulina saudiensis from the KSA Living Library","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Halospirulina sp. 171","leadOrganizations":["King Abdullah University of Science and Technology (KAUST)"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/05/07; operational lifecycle is not asserted.","statusEvidenceDate":"2026-05-07","description":"The KSA Living Library characterizes microalgae and cyanobacteria originating from Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1463121","SAMN59259494"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1463121"},{"scheme":"BioSample","value":"SAMN59259494"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1463121","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1463121:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1463121","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1467888","name":"Antimicrobial resistance, virulence determinants, and genomic characterization of Escherichia coli from retail eggshells in the United Arab Emirates","displayTitle":"Antimicrobial resistance, virulence determinants, and genomic characterization of Escherichia coli from retail eggshells in the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Solu Healthcare Oy"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/05/19; operational lifecycle is not asserted.","statusEvidenceDate":"2026-05-19","description":"This study provides baseline evidence on the occurrence, antimicrobial resistance, virulence determinants, and genomic diversity of generic E. coli recovered from retail table eggs in the United Arab Emirates (UAE).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1467888"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1467888"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1467888","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1467888:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1467888","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1467966","name":"Miicrobiota profile in animal model of Focal segmental glomerulosclerosis (FSGS)","displayTitle":"Miicrobiota profile in animal model of Focal segmental glomerulosclerosis (FSGS)","aliases":[],"countries":["Oman","Qatar"],"regionLabel":"Oman · Qatar","geographicScope":"Oman, Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Oman College of Health Sciences"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/05/19; operational lifecycle is not asserted.","statusEvidenceDate":"2026-05-19","description":"Focal segmental glomerulosclerosis (FSGS) was induced in male BALBc mice using single IV injection of adryamycin. Control group were injected with saline. fresh stool samples were collected 7 days post injection. FSGS was confirmed histologically and by protein analysis in urine. DNA were extracted from stool samples and sequencing libraries were prepared according to the manufacturer instructions of TruSeq Nano DNA High Throughput Library. Sequencing was performed in the Nova Seq (illumina)","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1467966"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1467966"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1467966","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1467966:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1467966","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1475391","name":"Detection of Low-Frequency Drug-Resistant Variants of HIV-1","displayTitle":"Detection of Low-Frequency Drug-Resistant Variants of HIV-1","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Ministry of Health"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/05; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-05","description":"Background: Highly Active Antiretroviral Therapy has transformed the management of HIV-1 infection; however, the emergence of drug-resistant variants remains a critical challenge. Whole Genome Sequencing offers comprehensive detection of resistance mutations across all viral gene regions simultaneously.Objectives: To evaluate the performance of Whole Genome HIV-1 Assay on the Ion Torrent S5 platform compared to targeted NGS and Sanger sequencing for detecting drug-resistant variants in HIV-1 positive patients at Mubarak Al Kabeer Hospital, Kuwait.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1475391"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1475391"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1475391","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1475391:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1475391","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1476337","name":"Patagioenas leucocephala (white-crowned pigeon) genome, bPatLeu1, sequence data","displayTitle":"Patagioenas leucocephala (white-crowned pigeon) genome, bPatLeu1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/08; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-08","description":"The white-crowned pigeon (Patagioenas leucocephala) is a fruit and seed-eating species of bird in the dove and pigeon family Columbidae. It is found primarily in the Caribbean (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1476337"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1476337"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1476337","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1476337:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1476337","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1476338","name":"Patagioenas albipennis (white-winged pigeon) genome, bPatAlb1, sequence data","displayTitle":"Patagioenas albipennis (white-winged pigeon) genome, bPatAlb1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/08; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-08","description":"The white-winged pigeon (Patagioenas albipennis) is a columbiform bird taxon of the genus Patagioenas that inhabits valleys and ravines in mountainous areas of central-west South America (translated from Spanish Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco. Assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1476338"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1476338"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1476338","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1476338:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1476338","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1476773","name":"Patagioenas squamosa (scaly-naped pigeon) genome, bPatSqu1, sequence data","displayTitle":"Patagioenas squamosa (scaly-naped pigeon) genome, bPatSqu1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/09; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-09","description":"The scaly-naped pigeon (Patagioenas squamosa), also known as the red-necked pigeon, is a bird belonging to the family Columbidae. The species occurs throughout the Caribbean (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1476773"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1476773"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1476773","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1476773:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1476773","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1476774","name":"Patagioenas cayennensis (pale-vented pigeon) genome, bPatCay1, sequence data","displayTitle":"Patagioenas cayennensis (pale-vented pigeon) genome, bPatCay1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/09; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-09","description":"The pale-vented pigeon (Patagioenas cayennensis) is a large pigeon (family Columbidae) found in the tropical Americas. With its relatives it represents an evolutionary radiation extending through most of the warm-temperate to tropical Americas. Grey-hued birds, even their males generally lack iridescent display plumage, although the present species has some coppery gloss on the nape (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1476774"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1476774"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1476774","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1476774:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1476774","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1477438","name":"Shelter Dogs and Cats as a One Health Interface for Phenotypic and Genomic Surveillance of Antimicrobial-Resistant Enterococcus Spp. in the United Arab Emirates","displayTitle":"Shelter Dogs and Cats as a One Health Interface for Phenotypic and Genomic Surveillance of Antimicrobial-Resistant Enterococcus Spp. in the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Solu Healthcare Oy"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/11; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-11","description":"This study investigated the recovery, antimicrobial resistance, and genomic features of Enterococcus spp. from shelter dogs and cats in the United Arab Emirates (UAE).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1477438"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1477438"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1477438","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1477438:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1477438","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1477606","name":"Substrate Type Shapes Microbial Community Structure in Omani Avicennia marina Mangroves","displayTitle":"Substrate Type Shapes Microbial Community Structure in Omani Avicennia marina Mangroves","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["OGRC/Sultan Qaboos University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/11; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-11","description":"This project investigates bacterial community composition and diversity across Avicennia marina mangrove ecosystems in Oman. Samples were collected from four mangrove sites, including Bandar Al-Khairan, Al-Qurum 1, Al-Qurum 2, and the planted Al-Sawadi lagoon. Three substrate types were analyzed: water, sediment, and rhizosphere. Sampling was conducted over three consecutive months: April, May, and June. Bacterial communities were characterized using 16S rRNA gene amplicon sequencing to evaluate the effects of substrate type, site, and short-term temporal variation on microbial community structure.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1477606"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1477606"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1477606","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1477606:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1477606","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1478113","name":"Characterization of oral microbiome alterations in thalassemia patients using 16S rRNA gene sequencing","displayTitle":"Characterization of oral microbiome alterations in thalassemia patients using 16S rRNA gene sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdulaziz University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/13; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-13","description":"This study investigates the composition of the oral microbiota in thalassemia patients and compares it with healthy individuals from Saudi Arabia. Thalassemia is an inherited blood disorder characterized by reduced or absent production of globin chains, resulting in hypochromic microcytic anemia and multiple complications, such as iron overload from by frequent blood transfusions. Using 16S rRNA gene sequencing, 28 saliva samples were analyzed, revealing minor changes in the richness and diversity of the oral microbiota. Taxonomic analysis demonstrated significant differences between the two groups, with notable variations in the abundance of several bacterial species. All taxa showing differential abundance belonged to two phyla Firmicutes and Bacteroidota; including taxa such as Prevotella intermedia, Eubacterium sulci, and Porphyromonas gingivalis. Thalassemia patients exhibited a reduction in beneficial bacteria such as Prevotella. The observed gender differences in oral microbiome diversity warrant further investigation for potential gender-specific interventions. Future research should focus on characterizing microbial shifts in greater depth and exploring probiotics or prebiotics to restore beneficial bacteria. Incorporating regular dental check ups and targeted oral hygiene strategies into thalassemia care may significantly improve treatment outcomes and overall patient health through better oral microbiome management.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1478113"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1478113"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1478113","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1478113:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1478113","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1478227","name":"Fungal ITS amplicon sequencing of Prosopis juliflora-associated compartments in Oman","displayTitle":"Fungal ITS amplicon sequencing of Prosopis juliflora-associated compartments in Oman","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Sultan Qaboos University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/14; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-14","description":"This BioProject contains fungal ITS1 amplicon sequencing reads generated from Prosopis juliflora leaves, fine roots, rhizosphere soil and adjacent bulk soil collected from Seeb and Samail, Oman. The dataset was generated to compare compartment-specific fungal communities associated with invasive Prosopis juliflora using Illumina MiSeq sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1478227"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1478227"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1478227","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1478227:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1478227","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1478775","name":"AMR and genomic characterization of E. coli from sheep in Qatar","displayTitle":"AMR and genomic characterization of E. coli from sheep in Qatar","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/16; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-16","description":"This project investigates the genomic characteristics and AMR profiles of E. coli isolates recovered from sheep fecal samples in Qatar. Whole-genome sequencing was performed to characterize antimicrobial resistance genes, virulence-associated factors and genetic diversity.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1478775"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1478775"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1478775","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1478775:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1478775","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1479176","name":"Homo sapiens isolate:Sample_01 Genome sequencing","displayTitle":"Homo sapiens isolate:Sample_01 Genome sequencing","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/17; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-17","description":"Partial sequence of MSX1 Gene among samples of non-syndrome cleft lip with or without cleft palate in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1479176"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1479176"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1479176","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1479176:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1479176","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1479459","name":"Patagioenas leucocephala (white-crowned pigeon) genome, bPatLeu1","displayTitle":"Patagioenas leucocephala (white-crowned pigeon) genome, bPatLeu1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Patagioenas leucocephala","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/17; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-17","description":"The white-crowned pigeon (Patagioenas leucocephala) is a fruit and seed-eating species of bird in the dove and pigeon family Columbidae. It is found primarily in the Caribbean (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1479459"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1479459"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1479459","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1479459:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1479459","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1479462","name":"Patagioenas albipennis (white-winged pigeon) genome, bPatAlb1","displayTitle":"Patagioenas albipennis (white-winged pigeon) genome, bPatAlb1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Patagioenas maculosa albipennis","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/17; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-17","description":"The white-winged pigeon (Patagioenas albipennis) is a columbiform bird taxon of the genus Patagioenas that inhabits valleys and ravines in mountainous areas of central-west South America (translated from Spanish Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco. Assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1479462"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1479462"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1479462","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1479462:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1479462","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1479463","name":"Patagioenas squamosa (scaly-naped pigeon) genome, bPatSqu1","displayTitle":"Patagioenas squamosa (scaly-naped pigeon) genome, bPatSqu1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Patagioenas squamosa","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/17; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-17","description":"The scaly-naped pigeon (Patagioenas squamosa), also known as the red-necked pigeon, is a bird belonging to the family Columbidae. The species occurs throughout the Caribbean (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1479463"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1479463"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1479463","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1479463:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1479463","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1481712","name":"Draft genomes of Salmonella enterica different Serovars and STs isolated from poultry and poultry-associate environment","displayTitle":"Draft genomes of Salmonella enterica different Serovars and STs isolated from poultry and poultry-associate environment","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["National Center for the Prevention & Control of Plants Pests & Animal Diseases"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/24; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-24","description":"This is important for public health, food safety, and scientific advancement in Saudi Arabia. These are previously unreported serovars and sequence types of Salmonella enterica by applying whole-genome sequencing, that expands the national epidemiological map of poultry-associated strains","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1481712","SAMN61089413","SAMN61089421","SAMN61089414","SAMN61089426","SAMN61089418","SAMN61089429","SAMN61089428","SAMN61089422"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1481712"},{"scheme":"BioSample","value":"SAMN61089413"},{"scheme":"BioSample","value":"SAMN61089421"},{"scheme":"BioSample","value":"SAMN61089414"},{"scheme":"BioSample","value":"SAMN61089426"},{"scheme":"BioSample","value":"SAMN61089418"},{"scheme":"BioSample","value":"SAMN61089429"},{"scheme":"BioSample","value":"SAMN61089428"},{"scheme":"BioSample","value":"SAMN61089422"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1481712","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1481712:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1481712","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482218","name":"Patagioenas speciosa (scaled pigeon) genome, bPatSpe1, sequence data","displayTitle":"Patagioenas speciosa (scaled pigeon) genome, bPatSpe1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/25; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-25","description":"The scaled pigeon (Patagioenas speciosa) is a large New World tropical dove. It is a resident breeder from southern Mexico south to western Ecuador, southern Brazil, northern Argentina, and Trinidad (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482218"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482218"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482218","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482218:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482218","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482219","name":"Patagioenas picazuro (picazuro pigeon) genome, bPatPic1, sequence data","displayTitle":"Patagioenas picazuro (picazuro pigeon) genome, bPatPic1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/25; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-25","description":"The picazuro pigeon (Patagioenas picazuro) is a pigeon native to South America, found in Argentina, Bolivia, Brazil, Paraguay and Uruguay (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482219"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482219"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482219","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482219:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482219","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482221","name":"Streptopelia tranquebarica (red collared dove) genome, bStrTra1, sequence data","displayTitle":"Streptopelia tranquebarica (red collared dove) genome, bStrTra1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/25; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-25","description":"The red collared dove (Streptopelia tranquebarica), also known as the red turtle dove, is a small pigeon which is a resident breeding bird in the tropics of Asia (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482221"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482221"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482221","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482221:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482221","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482222","name":"Columba oenas (stock dove) genome, bColOen1, sequence data","displayTitle":"Columba oenas (stock dove) genome, bColOen1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/25; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-25","description":"The stock dove (Columba oenas) is a species of bird in the family Columbidae, the doves and pigeons. It is widely distributed in the western Palearctic, north to central Scandinavia and south to northwest Africa (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482222"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482222"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482222","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482222:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482222","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482223","name":"Macropygia unchall (barred cuckoo-dove) genome, bMacUnc1, sequence data","displayTitle":"Macropygia unchall (barred cuckoo-dove) genome, bMacUnc1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/25; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-25","description":"The barred cuckoo-dove (Macropygia unchall) is a bird species in the family Columbidae. It is native to South and Southeast Asia, and listed as Least Concern on the IUCN Red List (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482223"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482223"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482223","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482223:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482223","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482638","name":"Zenaida meloda (West Peruvian dove) genome, bZenMel1, sequence data","displayTitle":"Zenaida meloda (West Peruvian dove) genome, bZenMel1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/26; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-26","description":"The West Peruvian dove (Zenaida meloda) is a species of dove in the genus Zenaida. It can be found in desert lowlands and foothills in many open and semi-open habitats (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482638"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482638"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482638","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482638:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482638","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482639","name":"Columba delegorguei (eastern bronze-naped pigeon) genome, bColDeg1, sequence data","displayTitle":"Columba delegorguei (eastern bronze-naped pigeon) genome, bColDeg1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/26; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-26","description":"The eastern bronze-naped pigeon (Columba delegorguei), also known as Delegorgue's pigeon, is a species of bird in the family Columbidae. It is found in Angola, Kenya, Malawi, Mozambique, South Africa, South Sudan, Tanzania, Uganda, Zambia, and Zimbabwe (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482639"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482639"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482639","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482639:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482639","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482640","name":"Pampusana sanctaecrucis (Santa Cruz ground dove) genome, bPamSan1, sequence data","displayTitle":"Pampusana sanctaecrucis (Santa Cruz ground dove) genome, bPamSan1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/26; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-26","description":"The Santa Cruz ground dove (Pampusana sanctaecrucis) is a species of bird in the family Columbidae. It is found in the southern Solomon Islands and Vanuatu. Its natural habitat is subtropical or tropical moist lowland forests. It is threatened by habitat loss (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482640"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482640"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482640","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482640:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482640","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482641","name":"Treron vernans (pink-necked green pigeon) genome, bTreVer1, sequence data","displayTitle":"Treron vernans (pink-necked green pigeon) genome, bTreVer1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/26; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-26","description":"The pink-necked green pigeon (Treron vernans) is a species of bird of the pigeon and dove family, Columbidae. It is a common species of Southeast Asia, found from Myanmar, Thailand, and Vietnam south through to the major islands of Indonesia and the Philippines (where it is called \"punay\") (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482641"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482641"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482641","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482641:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482641","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1482642","name":"Columba eversmanni (yellow-eyed pigeon) genome, bColEve1, sequence data","displayTitle":"Columba eversmanni (yellow-eyed pigeon) genome, bColEve1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/26; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-26","description":"The yellow-eyed stock dove (Columba eversmanni) is a member of the family Columbidae (doves and pigeons). It breeds in southern Kazakhstan, Uzbekistan, Turkmenistan, Tajikistan, Kyrgyzstan, Afghanistan, north-east Iran and extreme north-west China (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1482642"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1482642"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482642","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1482642:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1482642","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1484183","name":"Patagioenas cayennensis (pale-vented pigeon) genome, bPatCay1","displayTitle":"Patagioenas cayennensis (pale-vented pigeon) genome, bPatCay1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Patagioenas cayennensis","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/30; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-30","description":"The pale-vented pigeon (Patagioenas cayennensis) is a large pigeon (family Columbidae) found in the tropical Americas. With its relatives it represents an evolutionary radiation extending through most of the warm-temperate to tropical Americas. Grey-hued birds, even their males generally lack iridescent display plumage, although the present species has some coppery gloss on the nape (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1484183"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1484183"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1484183","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1484183:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1484183","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1484191","name":"Oena capensis (Namaqua dove) genome, bOenCap1, sequence data","displayTitle":"Oena capensis (Namaqua dove) genome, bOenCap1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/30; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-30","description":"The Namaqua dove (Oena capensis) is a very small species of pigeon. It is the only species in the genus Oena. It is found over much of Sub-Saharan Africa as well as Arabia and Madagascar (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1484191"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1484191"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1484191","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1484191:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1484191","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1484192","name":"Columba livia gymnocycla (rock pigeon) genome, bColLiv6, sequence data","displayTitle":"Columba livia gymnocycla (rock pigeon) genome, bColLiv6, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/30; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-30","description":"The rock pigeon (Columba livia) is a member of the bird family Columbidae (doves and pigeons). It's a fairly large pigeon with pale gray overall with two bold black wingbars and iridescent purple and green on neck. This species has wild and feral populations throughout the world. True wild birds nest on cliffs and in caves from western Europe to central Asia. Feral varieties are common in cities and farmland, often in large flocks (from Wikipedia entry). This sample of a female individual is from the gymnocycla subspecies, the West African rock dove (recent evidence supports a species-level taxonomic arrangement to designate the West African rock dove as C. gymnocycla, PMID: 40896089). The sample was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1484192"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1484192"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1484192","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1484192:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1484192","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1484202","name":"The rock pigeon (Columba livia) is a member of the bird family Columbidae (doves and pigeons).","displayTitle":"The rock pigeon (Columba livia) is a member of the bird family Columbidae (doves and pigeons).","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Columba livia gymnocycla","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/06/30; operational lifecycle is not asserted.","statusEvidenceDate":"2026-06-30","description":"The rock pigeon (Columba livia) is a member of the bird family Columbidae (doves and pigeons). It's a fairly large pigeon with pale gray overall with two bold black wingbars and iridescent purple and green on neck. This species has wild and feral populations throughout the world. True wild birds nest on cliffs and in caves from western Europe to central Asia. Feral varieties are common in cities and farmland, often in large flocks (from Wikipedia entry). This sample of a female individual is from the gymnocycla subspecies, the West African rock dove (recent evidence supports a species-level taxonomic arrangement to designate the West African rock dove as C. gymnocycla, PMID: 40896089). The sample was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA1484202","PRJNA1484203"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1484202"},{"scheme":"BioProject","value":"PRJNA1484203"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1484202","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1484202:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1484202","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna1484202:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1484203","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna1485012","name":"Zenaida macroura (mourning dove) genome, bZenMac1, sequence data","displayTitle":"Zenaida macroura (mourning dove) genome, bZenMac1, sequence data","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/02; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-02","description":"The mourning dove (Zenaida macroura) is a member of the dove family, Columbidae. It is one of the most abundant and widespread North American birds and a popular gamebird, with more than 20 million birds (up to 70 million in some years) shot annually in the U.S., both for sport and meat (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1485012"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1485012"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1485012","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1485012:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1485012","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1489738","name":"Amplicon Profiling of Fungi and Oomycetes in Greenhouse Cucumbers Highlights a Compartment-Driven Structure","displayTitle":"Amplicon Profiling of Fungi and Oomycetes in Greenhouse Cucumbers Highlights a Compartment-Driven Structure","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Pythium sp.","leadOrganizations":["Sultan Qaboos University"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/04; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-04","description":"Root and rhizosphere of cucumber plants thar are symptomatic and asymptomatic grown in greenhouse conditions from two governorates from Oman","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA1489738"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1489738"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1489738","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1489738:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1489738","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493194","name":"Patagioenas speciosa (scaled pigeon) genome, bPatSpe1","displayTitle":"Patagioenas speciosa (scaled pigeon) genome, bPatSpe1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Patagioenas speciosa","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The scaled pigeon (Patagioenas speciosa) is a large New World tropical dove. It is a resident breeder from southern Mexico south to western Ecuador, southern Brazil, northern Argentina, and Trinidad (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493194"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493194"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493194","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493194:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493194","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493195","name":"Patagioenas picazuro (picazuro pigeon) genome, bPatPic1","displayTitle":"Patagioenas picazuro (picazuro pigeon) genome, bPatPic1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Patagioenas picazuro","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The picazuro pigeon (Patagioenas picazuro) is a pigeon native to South America, found in Argentina, Bolivia, Brazil, Paraguay and Uruguay (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493195"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493195"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493195","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493195:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493195","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493199","name":"Streptopelia tranquebarica (red collared dove) genome, bStrTra1","displayTitle":"Streptopelia tranquebarica (red collared dove) genome, bStrTra1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Streptopelia tranquebarica","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The red collared dove (Streptopelia tranquebarica), also known as the red turtle dove, is a small pigeon which is a resident breeding bird in the tropics of Asia (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi and Erick Duarte of the VGL.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493199"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493199"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493199","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493199:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493199","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493203","name":"Columba oenas (stock dove) genome, bColOen1","displayTitle":"Columba oenas (stock dove) genome, bColOen1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Columba oenas","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The stock dove (Columba oenas) is a species of bird in the family Columbidae, the doves and pigeons. It is widely distributed in the western Palearctic, north to central Scandinavia and south to northwest Africa (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493203"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493203"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493203","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493203:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493203","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493205","name":"Macropygia unchall (barred cuckoo-dove) genome, bMacUnc1","displayTitle":"Macropygia unchall (barred cuckoo-dove) genome, bMacUnc1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Macropygia unchall","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The barred cuckoo-dove (Macropygia unchall) is a bird species in the family Columbidae. It is native to South and Southeast Asia, and listed as Least Concern on the IUCN Red List (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493205"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493205"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493205","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493205:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493205","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493208","name":"Treron vernans (pink-necked green pigeon) genome, bTreVer1","displayTitle":"Treron vernans (pink-necked green pigeon) genome, bTreVer1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Treron vernans","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The pink-necked green pigeon (Treron vernans) is a species of bird of the pigeon and dove family, Columbidae. It is a common species of Southeast Asia, found from Myanmar, Thailand, and Vietnam south through to the major islands of Indonesia and the Philippines (where it is called \"punay\") (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493208"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493208"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493208","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493208:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493208","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493209","name":"Columba eversmanni (yellow-eyed pigeon) genome, bColEve1","displayTitle":"Columba eversmanni (yellow-eyed pigeon) genome, bColEve1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Columba eversmanni","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The yellow-eyed stock dove (Columba eversmanni) is a member of the family Columbidae (doves and pigeons). It breeds in southern Kazakhstan, Uzbekistan, Turkmenistan, Tajikistan, Kyrgyzstan, Afghanistan, north-east Iran and extreme north-west China (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493209"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493209"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493209","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493209:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493209","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493214","name":"Pampusana sanctaecrucis (Santa Cruz ground dove) genome, bPamSan1","displayTitle":"Pampusana sanctaecrucis (Santa Cruz ground dove) genome, bPamSan1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Pampusana sanctaecrucis","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The Santa Cruz ground dove (Pampusana sanctaecrucis) is a species of bird in the family Columbidae. It is found in the southern Solomon Islands and Vanuatu. Its natural habitat is subtropical or tropical moist lowland forests. It is threatened by habitat loss (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493214"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493214"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493214","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493214:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493214","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493215","name":"Zenaida meloda (West Peruvian dove) genome, bZenMel1","displayTitle":"Zenaida meloda (West Peruvian dove) genome, bZenMel1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Zenaida meloda","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The West Peruvian dove (Zenaida meloda) is a species of dove in the genus Zenaida. It can be found in desert lowlands and foothills in many open and semi-open habitats (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493215"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493215"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493215","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493215:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493215","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493218","name":"Columba delegorguei (eastern bronze-naped pigeon) genome, bColDeg1","displayTitle":"Columba delegorguei (eastern bronze-naped pigeon) genome, bColDeg1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Columba delegorguei","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The eastern bronze-naped pigeon (Columba delegorguei), also known as Delegorgue's pigeon, is a species of bird in the family Columbidae. It is found in Angola, Kenya, Malawi, Mozambique, South Africa, South Sudan, Tanzania, Uganda, Zambia, and Zimbabwe (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493218"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493218"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493218","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493218:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493218","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493220","name":"Oena capensis (Namaqua dove) genome, bOenCap1","displayTitle":"Oena capensis (Namaqua dove) genome, bOenCap1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Oena capensis","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The Namaqua dove (Oena capensis) is a very small species of pigeon. It is the only species in the genus Oena. It is found over much of Sub-Saharan Africa as well as Arabia and Madagascar (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493220"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493220"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493220","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493220:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493220","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493222","name":"Zenaida macroura (mourning dove) genome, bZenMac1","displayTitle":"Zenaida macroura (mourning dove) genome, bZenMac1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Zenaida macroura","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The mourning dove (Zenaida macroura) is a member of the dove family, Columbidae. It is one of the most abundant and widespread North American birds and a popular gamebird, with more than 20 million birds (up to 70 million in some years) shot annually in the U.S., both for sport and meat (from Wikipedia entry). This sample of a female individual was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi and Erick Duarte of the VGL.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493222"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493222"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493222","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493222:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493222","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1493223","name":"Columba livia gymnocycla (rock pigeon) genome, bColLiv6","displayTitle":"Columba livia gymnocycla (rock pigeon) genome, bColLiv6","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Columba livia gymnocycla","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genomes Lab"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/10; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-10","description":"The rock pigeon (Columba livia) is a member of the bird family Columbidae (doves and pigeons). It's a fairly large pigeon with pale gray overall with two bold black wingbars and iridescent purple and green on neck. This species has wild and feral populations throughout the world. True wild birds nest on cliffs and in caves from western Europe to central Asia. Feral varieties are common in cities and farmland, often in large flocks (from Wikipedia entry). This sample of a female individual is from the gymnocycla subspecies, the West African rock dove (recent evidence supports a species-level taxonomic arrangement to designate the West African rock dove as C. gymnocycla, PMID: 40896089). The sample was procured from the breeding center project \"The Dodo Park\" owned by Nasser Bin Mohamed Al-Jbr in northern Qatar and coordinated by Simona Secomandi and supported by Ben Novak to generate a high-quality reference genome for Revive &amp; Restore and the Vertebrate Genomes Project (VGP). Sequencing was done by the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco, and assembly and manual curation were done by Secomandi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA1493223","PRJNA1493222","PRJNA977295","PRJNA489243","PRJNA1448080","PRJNA1484203","33911273","PRJNA1484202","PRJNA1448079"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1493223"},{"scheme":"BioProject","value":"PRJNA1493222"},{"scheme":"BioProject","value":"PRJNA977295"},{"scheme":"BioProject","value":"PRJNA489243"},{"scheme":"BioProject","value":"PRJNA1448080"},{"scheme":"BioProject","value":"PRJNA1484203"},{"scheme":"PMID","value":"33911273"},{"scheme":"BioProject","value":"PRJNA1484202"},{"scheme":"BioProject","value":"PRJNA1448079"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493223","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1493223:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1493223","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna1497650","name":"This BioProject aims to characterize the genomic features and genetic diversity of Salmonella isolates obtained from poultry samples.","displayTitle":"This BioProject aims to characterize the genomic features and genetic diversity of Salmonella isolates obtained from poultry samples.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Salmonella enterica subsp. enterica serovar Minnesota; Salmonella enterica subsp. enterica serovar Typhimurium","leadOrganizations":["WEQAA CENTER"],"partnerOrganizations":[],"startYear":2026,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2026/07/20; operational lifecycle is not asserted.","statusEvidenceDate":"2026-07-20","description":"This BioProject aims to characterize the genomic features and genetic diversity of Salmonella isolates obtained from poultry samples. Whole genome sequencing was performed using an Illumina Miseq sequencing platform, followed by genome assembly and bioinformatic analysis. The generated genomic data will be used for species identification, genomic characterization, sequence typing, phylogenetic analysis, and investigation of genetic relationships among Salmonella isolates. 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The results demonstrated the importance the value of WGS for antimicrobial resistance surveillance in Kuwait.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA1499723","SAMN61887960","SAMN61887927","SAMN61887947","SAMN61887945","SAMN61887918","SAMN61887952","SAMN61887930","SAMN61887943","SAMN61887908","SAMN61887915","SAMN61887941","SAMN61887942","SAMN61887944","SAMN61887914","SAMN61887950","SAMN61887911","SAMN61887913","SAMN61887956","SAMN61887934","SAMN61887923","SAMN61887957","SAMN61887935","SAMN61887951","SAMN61887946","SAMN61887953","SAMN61887948","SAMN61887940","SAMN61887938","SAMN61887910","SAMN61887909","SAMN61887919","SAMN61887917","SAMN61887907","SAMN61887929","SAMN61887955","SAMN61887933","SAMN61887920","SAMN61887949","SAMN61887925","SAMN61887937","SAMN61887928","SAMN61887932","SAMN61887924","SAMN61887906","SAMN61887958","SAMN61887922","SAMN61887939","SAMN61887926","SAMN61887916","SAMN61887921","SAMN61887961","SAMN61887959","SAMN61887931","SAMN61887936","SAMN61887954","SAMN61887912"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1499723"},{"scheme":"BioSample","value":"SAMN61887960"},{"scheme":"BioSample","value":"SAMN61887927"},{"scheme":"BioSample","value":"SAMN61887947"},{"scheme":"BioSample","value":"SAMN61887945"},{"scheme":"BioSample","value":"SAMN61887918"},{"scheme":"BioSample","value":"SAMN61887952"},{"scheme":"BioSample","value":"SAMN61887930"},{"scheme":"BioSample","value":"SAMN61887943"},{"scheme":"BioSample","value":"SAMN61887908"},{"scheme":"BioSample","value":"SAMN61887915"},{"scheme":"BioSample","value":"SAMN61887941"},{"scheme":"BioSample","value":"SAMN61887942"},{"scheme":"BioSample","value":"SAMN61887944"},{"scheme":"BioSample","value":"SAMN61887914"},{"scheme":"BioSample","value":"SAMN61887950"},{"scheme":"BioSample","value":"SAMN61887911"},{"scheme":"BioSample","value":"SAMN61887913"},{"scheme":"BioSample","value":"SAMN61887956"},{"scheme":"BioSample","value":"SAMN61887934"},{"scheme":"BioSample","value":"SAMN61887923"},{"scheme":"BioSample","value":"SAMN61887957"},{"scheme":"BioSample","value":"SAMN61887935"},{"scheme":"BioSample","value":"SAMN61887951"},{"scheme":"BioSample","value":"SAMN61887946"},{"scheme":"BioSample","value":"SAMN61887953"},{"scheme":"BioSample","value":"SAMN61887948"},{"scheme":"BioSample","value":"SAMN61887940"},{"scheme":"BioSample","value":"SAMN61887938"},{"scheme":"BioSample","value":"SAMN61887910"},{"scheme":"BioSample","value":"SAMN61887909"},{"scheme":"BioSample","value":"SAMN61887919"},{"scheme":"BioSample","value":"SAMN61887917"},{"scheme":"BioSample","value":"SAMN61887907"},{"scheme":"BioSample","value":"SAMN61887929"},{"scheme":"BioSample","value":"SAMN61887955"},{"scheme":"BioSample","value":"SAMN61887933"},{"scheme":"BioSample","value":"SAMN61887920"},{"scheme":"BioSample","value":"SAMN61887949"},{"scheme":"BioSample","value":"SAMN61887925"},{"scheme":"BioSample","value":"SAMN61887937"},{"scheme":"BioSample","value":"SAMN61887928"},{"scheme":"BioSample","value":"SAMN61887932"},{"scheme":"BioSample","value":"SAMN61887924"},{"scheme":"BioSample","value":"SAMN61887906"},{"scheme":"BioSample","value":"SAMN61887958"},{"scheme":"BioSample","value":"SAMN61887922"},{"scheme":"BioSample","value":"SAMN61887939"},{"scheme":"BioSample","value":"SAMN61887926"},{"scheme":"BioSample","value":"SAMN61887916"},{"scheme":"BioSample","value":"SAMN61887921"},{"scheme":"BioSample","value":"SAMN61887961"},{"scheme":"BioSample","value":"SAMN61887959"},{"scheme":"BioSample","value":"SAMN61887931"},{"scheme":"BioSample","value":"SAMN61887936"},{"scheme":"BioSample","value":"SAMN61887954"},{"scheme":"BioSample","value":"SAMN61887912"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1499723","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna1499723:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1499723","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"accessionIds":["PRJNA1502585"],"aliases":[],"countries":["Saudi Arabia"],"dataAccess":"Public repository metadata; access varies by record.","dataTypes":["WGS","RNA-Seq","METAGENOMIC","METATRANSCRIPTOMIC"],"description":"Metagenomic and metatranscriptomic sequencing from marine anammox bioreactors operated under planktonic and granular growth conditions supports analysis of microbial community composition and functional potential.","displayTitle":"Marine anammox bioreactor metagenomics and metatranscriptomics","domainGroup":"Environmental and microbial genomics","endYear":null,"evidenceGrade":"B","geographicScope":"Thuwal, Saudi Arabia sample collection metadata","id":"ncbi-prjna1502585","identifiers":[{"scheme":"BioProject","value":"PRJNA1502585"}],"inclusionBasis":"Direct GCC sample-collection metadata in authoritative INSDC records.","lastVerified":"2026-08-26","leadOrganizations":["King Abdullah University of Science and Technology"],"lifecycleGroup":"Repository record","lifecycleStatus":"repository record","name":"Marine anammox bioreactor metagenomics and metatranscriptomics","notes":"Editorially normalized to the stable project-level accession; 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access varies by record.","dataTypes":["AMPLICON","METAGENOMIC"],"description":"Longitudinal 16S rRNA amplicon sequencing of fecal samples from post-weaning Sprague Dawley rats compares camel-, goat-, and commercial-infant-formula regimens with an unsupplemented control.","displayTitle":"Gut microbiota dynamics in weaned rats fed camel, goat, and commercial infant formulas","domainGroup":"Agriculture, food and veterinary genomics","endYear":null,"evidenceGrade":"B","geographicScope":"Saudi Arabia sample collection metadata","id":"ncbi-prjna1506740","identifiers":[{"scheme":"BioProject","value":"PRJNA1506740"}],"inclusionBasis":"Direct GCC sample-collection metadata in authoritative INSDC records.","lastVerified":"2026-08-26","leadOrganizations":["Faculty of Pharmacy, Cairo University"],"lifecycleGroup":"Repository record","lifecycleStatus":"repository record","name":"Gut microbiota dynamics in weaned rats fed camel, goat, and commercial infant formulas","notes":"Editorially normalized to the stable project-level accession; 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operational lifecycle is not asserted.","statusEvidenceDate":"2012-08-01","description":"Whole transcript expression was profiled using the Affymetrix 1.0 array in human bronchial epithelial cells exposed to PM collected from Saudi Arabia for 1 or 4 days. The differentially expressed genes were identified and analyzed for enriched networks and pathways using Ingenuity Pathway Analysis (IPA). We have identified 140 and 230 genes that significantly changed more than 1.5 fold after PM exposure for 1 or 4 days, respectively. IPA analysis revealed that different exposure durations triggered distinct pathways. Genes involved in NRF2-mediated response to oxidative stress were up-regulated after 1 day exposure. In contrast, cells exposed for 4 days exhibited significantly changes in genes related to cholesterol and lipid synthesis pathways. Overall design: We analyzed gene expression profiles from 12 samples collected at two different time points, including 2 untreated controls, 2 normal PM treated samples and 2 storm PM treated samples for each time point.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Array","Transcriptome"],"accessionIds":["PRJNA167360"],"identifiers":[{"scheme":"BioProject","value":"PRJNA167360"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA167360","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna167360:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA167360","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna178032","name":"Nocardiopsis halotolerans DSM 44410 Genome sequencing and assembly","displayTitle":"Nocardiopsis halotolerans DSM 44410 Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Nocardiopsis halotolerans DSM 44410","leadOrganizations":["Yunnan Institute of Microbiology, Yunnan University"],"partnerOrganizations":[],"startYear":2013,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2013/02/19; operational lifecycle is not asserted.","statusEvidenceDate":"2013-02-19","description":"Genetic mechanisms of Nocardiopsis environmental adaptability.  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The first report of S. aureus subsp. anaerobius from a human was in a patient presenting with septicemia, septic arthritis, and multiple pulmonary abscesses to an emergency department in South Australia.  The Staphylococcus aureus subsp. anaerobius genome sequences offers major insight on the evolution and explains the taxonomic relationship between Staphylococcus species.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA178987"],"identifiers":[{"scheme":"BioProject","value":"PRJNA178987"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA178987","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna178987:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA178987","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna179343","name":"Profundibacterium mesophilum KAUST100406-0324 Genome sequencing and assembly","displayTitle":"Profundibacterium mesophilum KAUST100406-0324 Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Profundibacterium mesophilum KAUST100406-0324","leadOrganizations":["CBRC, KAUST"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/01/09; operational lifecycle is not asserted.","statusEvidenceDate":"2020-01-09","description":"Profundibacterium mesophilum gen. nov., sp. nov., a novel member in the family Rhodobacteraceae isolated from deep sea sediment in the Red Sea, Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA179343"],"identifiers":[{"scheme":"BioProject","value":"PRJNA179343"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA179343","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna179343:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA179343","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna18497","name":"Non-pandemic O1 El Tor serotype","displayTitle":"Non-pandemic O1 El Tor serotype","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Vibrio cholerae NCTC 8457","leadOrganizations":["TIGR","Broad Institute"],"partnerOrganizations":[],"startYear":2007,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2007/01/03; operational lifecycle is not asserted.","statusEvidenceDate":"2007-01-03","description":"Vibrio cholerae NCTC 8457. Vibrio cholerae NCTC 8457 was isolated from a clinical specimen in Saudi Arabia in 1910. This strain is an O1 El Tor serotype which did not become pandemic and will be used for comparative analysis with other Vibrio cholerae strains.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA18497"],"identifiers":[{"scheme":"BioProject","value":"PRJNA18497"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA18497","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna18497:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA18497","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna185767","name":"Red Sea marine sponges and seawater Targeted Locus (Loci)","displayTitle":"Red Sea marine sponges and seawater Targeted Locus (Loci)","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"marine metagenome","leadOrganizations":["University of Wuerzburg"],"partnerOrganizations":[],"startYear":2013,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2013/01/09; operational lifecycle is not asserted.","statusEvidenceDate":"2013-01-09","description":"The genes and transcripts of 16S rRNA were amplified from seawater, S. carteri, and X. testudinaria DNA (originating the following datasets: WTD1-WTD3, ASD1-ASD3, and AXD1-AXD3; respectively) and cDNA (originating the following datasets: WTR1-WTR3, ASR1-ASR3, and AXR1-AXR3; respectively). Purified amplicons were pooled equally and sequenced on a Roche 454 GS FLX Titanium platform. Sponge samples from the species Stylissa carteri and Xestospongia testudinaria were collected. Seawater samples were collected during the same dive. Sample location is: Fsar reef (22°23’N; 39°03’E) at the coast of Thuwal, Saudi Arabia. Depth was at 8.5-12 meters.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Targeted Locus (Loci)","Sequencing","Genome"],"accessionIds":["PRJNA185767"],"identifiers":[{"scheme":"BioProject","value":"PRJNA185767"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA185767","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna185767:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA185767","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna192710","name":"Leishmania arabica strain:LEM1108 Genome sequencing","displayTitle":"Leishmania arabica strain:LEM1108 Genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Leishmania arabica","leadOrganizations":["Kinetoplastid Genomes Consortium","The Genome Institute - Washington University School of Medicine"],"partnerOrganizations":[],"startYear":2013,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2013/06/11; operational lifecycle is not asserted.","statusEvidenceDate":"2013-06-11","description":"The kinetoplastids are a group of protozoa that include three major human disease-causing parasites: The Leishmania parasites and the African and American trypanosomes, each of which rank within the top 10 in terms of global impact. Leishmania arabica is limited to Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA192710"],"identifiers":[{"scheme":"BioProject","value":"PRJNA192710"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA192710","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna192710:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA192710","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna205118","name":"Vibrio fluvialis is a halophilic Gram-negative bacterium.","displayTitle":"Vibrio fluvialis is a halophilic Gram-negative bacterium.","aliases":[],"countries":["Bahrain"],"regionLabel":"Bahrain","geographicScope":"Bahrain connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Vibrio fluvialis I21563; Vibrio fluvialis PG41","leadOrganizations":["Institute of Microbial Technology"],"partnerOrganizations":[],"startYear":2013,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2013/07/02; operational lifecycle is not asserted.","statusEvidenceDate":"2013-07-02","description":"Vibrio fluvialis is a halophilic Gram-negative bacterium. It has a straight to slightly curved rod cell morphology that is motile by means of polar flagella. Vibrio fluvialis is a water-borne bacterium first isolated from patients with severe diarrhoea in Bahrain in the 1970s by A. L. Furniss and his colleagues, and is considered to be an emerging pathogen with the potential to have a significant impact on public health.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA205118","PRJNA205119"],"identifiers":[{"scheme":"BioProject","value":"PRJNA205118"},{"scheme":"BioProject","value":"PRJNA205119"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA205118","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna205118:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA205118","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna205118:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA205119","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna210525","name":"Rhynchophorus ferrugineus Transcriptome or Gene expression","displayTitle":"Rhynchophorus ferrugineus Transcriptome or Gene expression","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Rhynchophorus ferrugineus","leadOrganizations":["Jiont Center for Genomics Research, KASCT and CAS","King Abudulaziz City for Science and Technology"],"partnerOrganizations":[],"startYear":2013,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2013/07/04; operational lifecycle is not asserted.","statusEvidenceDate":"2013-07-04","description":"The trasncriptomics study of red palm weevil (Rhynchophorus ferrugineus) embryogenesis process. This study includes five libraries, which are from four embryos and one newly-hatched larvars timepoints.  The red palm weevil males and females were colleted from the farms in the oasis of Al Hofuf, Saudi Arabia. Eggs and newly-hatched larvars were collected from mating males and females.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA210525"],"identifiers":[{"scheme":"BioProject","value":"PRJNA210525"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA210525","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna210525:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA210525","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna211641","name":"Expression data from endothelial cells sorted from breast cancer cells MDA-MB231 as compared with normal endothelial cells","displayTitle":"Expression data from endothelial cells sorted from breast cancer cells MDA-MB231 as compared with normal endothelial cells","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Weill Cornell Mecial College - Qatar"],"partnerOrganizations":[],"startYear":2013,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2013/07/11; operational lifecycle is not asserted.","statusEvidenceDate":"2013-07-11","description":"We studied the crosstalk between tumor and endothelial cells to explore the role of tumor microenvironment on cancer growth and progression.  As part of our investigation, we showed that contact-dependent interaction of endothelial cells with breast tumor cells triggered the differential expression of a large number of genes in endothelium. Overall design: Endothelial and MDA-MB231 cells were co-cultured together under serum- cytokine-free environment for 5 days followed by sorting endothelial cells and extracting RNA for microarray analysis. All conditions were made in triplicate.  Endothelial cells were obtained using the methods described in Seandel M. & Butler J.M., 2008. WCMC-Q Genomics Core","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Array","Transcriptome"],"accessionIds":["PRJNA211641"],"identifiers":[{"scheme":"BioProject","value":"PRJNA211641"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA211641","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna211641:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA211641","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna229842","name":"Red Sea marine sponge Stylissa carteri metatranscriptomes","displayTitle":"Red Sea marine sponge Stylissa carteri metatranscriptomes","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"sponge metagenome","leadOrganizations":["University of Wuerzburg"],"partnerOrganizations":[],"startYear":2013,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2013/11/25; operational lifecycle is not asserted.","statusEvidenceDate":"2013-11-25","description":"The primary goal of this study was to reveal the most transcribed gene functions of the prokaryotes associated with S. carteri. Stylissa carteri specimens (n=3) were collected at Fsar reef (22°23’N; 39°03’E) at the coast of Thuwal, Saudi Arabia. The collection occurred with water temperature at 30 °C, at 13-14 meters depth, on 2nd November 2010. Enriched prokaryotic mRNA was obtained from total RNA extracted from RNAlater-preserved sponge tissues. Enriched prokaryotic mRNA was amplified and pair-ended sequenced using Illumina HiSeq 2000 standard protocols.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA229842"],"identifiers":[{"scheme":"BioProject","value":"PRJNA229842"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA229842","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna229842:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA229842","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna232440","name":"Pampus argenteus Genome sequencing","displayTitle":"Pampus argenteus Genome sequencing","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Pampus argenteus","leadOrganizations":["Kuwait Institute For Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2013,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2013/12/23; operational lifecycle is not asserted.","statusEvidenceDate":"2013-12-23","description":"Silver pomfret or Zobaidy as locally known in the Gulf region, belongs to the family Stromateidae. It is a highly valuable fish species in the region. The stock is shared among Kuwait, Iraq and Iran. Zobaidy stock is under heavy exploitation in the northern Gulf area as revealed from the drastic decrease in landings and catch rates. Genetic characterization of this species would greatly help in stock conservation through proper management and sustainable productivity. In this study the genome sequencing was carried out using Illumina Genome Analyzer","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA232440"],"identifiers":[{"scheme":"BioProject","value":"PRJNA232440"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA232440","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna232440:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA232440","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna240272","name":"The sequence and de-novo assembly of the Pampus argenteus (Silver pomfret) genome","displayTitle":"The sequence and de-novo assembly of the Pampus argenteus (Silver pomfret) genome","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Pampus argenteus","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/06/03; operational lifecycle is not asserted.","statusEvidenceDate":"2014-06-03","description":"Silver pomfret or Zobaidy as locally known in the Gulf region, belongs to the family Stromateidae. It is a highly valuable fish species in the region. The stock is shared among Kuwait, Iraq and Iran. Zobaidy stock is under heavy exploitation in the northern Gulf area as revealed from the drastic decrease in landings and catch rates. Genetic characterization of this species would greatly help in stock conservation through proper management and sustainable productivity. In this study the genome sequencing was carried out using Illumina Genome Analyzer.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA240272"],"identifiers":[{"scheme":"BioProject","value":"PRJNA240272"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA240272","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna240272:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA240272","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna245931","name":"Homo sapiens Variation","displayTitle":"Homo sapiens Variation","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Dasman Diabetes Institute"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/05/01; operational lifecycle is not asserted.","statusEvidenceDate":"2014-05-01","description":"Whole genome sequencing of sub-groups of Arab individuals in Kuwaiti population","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Variation","Sequencing","Genome"],"accessionIds":["PRJNA245931"],"identifiers":[{"scheme":"BioProject","value":"PRJNA245931"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA245931","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna245931:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA245931","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna253521","name":"Homo sapiens Transcriptome or Gene expression","displayTitle":"Homo sapiens Transcriptome or Gene expression","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Weill Cornell Medical College in Qatar"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/06/25; operational lifecycle is not asserted.","statusEvidenceDate":"2014-06-25","description":"The goal of this study is to identify deferentially expressed genes among three groups of individuals of the same family. These groups are : affected, unaffected wild, unaffected carrier.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA253521"],"identifiers":[{"scheme":"BioProject","value":"PRJNA253521"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA253521","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna253521:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA253521","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna258311","name":"Wetland microbial mats Targeted Locus (Loci)","displayTitle":"Wetland microbial mats Targeted Locus (Loci)","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"microbial mat metagenome","leadOrganizations":["Sultan Qaboos University"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/08/16; operational lifecycle is not asserted.","statusEvidenceDate":"2014-08-16","description":"This study was conducted to compare the bacterial diversity of cyanobacterial mats in an oil polluted wetland and the environmental parameters that shape up their distribution","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Targeted Locus (Loci)","Sequencing","Genome"],"accessionIds":["PRJNA258311"],"identifiers":[{"scheme":"BioProject","value":"PRJNA258311"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA258311","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna258311:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA258311","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna260607","name":"Human Exome sequence of a POF family","displayTitle":"Human Exome sequence of a POF family","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Magee-Womens Research Institute"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/09/09; operational lifecycle is not asserted.","statusEvidenceDate":"2014-09-09","description":"A Saudi Arabia family. The parents are first cousins. 3 daughters have primary amenorrhea, hypothyroidism and hypergonadotropic hypogonadism. Our study find a new MCM8 gene autosomal recessive mutation is related to the affected daughters endocrine dysfunction and genomic instability.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Exome","Sequencing","Genome"],"accessionIds":["PRJNA260607"],"identifiers":[{"scheme":"BioProject","value":"PRJNA260607"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA260607","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna260607:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA260607","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna265079","name":"Genome-wide peripheral blood transcriptome analysis of Arab female Lupus and Lupus nephritis","displayTitle":"Genome-wide peripheral blood transcriptome analysis of Arab female Lupus and Lupus nephritis","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Molecular Biology, Medical laboratory Sciences, Kuwait University"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/10/28; operational lifecycle is not asserted.","statusEvidenceDate":"2014-10-28","description":"Genome-wide alternative splice analysis of RNA from lupus and its severe form lupus nephritis We aimed to explore the genome-wide peripheral blood transcriptome of lupus (SLE) and its severe form lupus nephritis (LN) cases compared to healthy subjects (HC) using high density Affymetrix Human Exon1.0.ST arrays. Analysis revealed 15 splice variants that are differentially expressed between SLE/HC and 99 variants between LN/HC (p≤0.05,SI>or≤0.5,Benjamin Hochberg-False discovery rate correction). Comparison between LN/SLE revealed 7 variants that are differentially expressed with p≤0.05,SI>0.5,Benjamin Hochberg-FDR correction. Pathway analysis of differentially spliced genes revealed 11 significant pathways in SLE and 12 in LN (p<0.05). Analysis of peripheral blood transcriptome revealed signature causative genes that are alternatively spliced, signifying their clinical relevance in the pathophysiology of disease. The extent of differential splicing was found to be higher in LN than in SLE, signifying the need for further in-depth research in the same domain. Present study is the first to reveal the significance of alternative variants in susceptibility to SLE and LN. Overall design: We analyzed blood from 11 female subjects (5 lupus, 3 lupus nephritis and 3 healthy control) using the Affymetrix Human Exon 1.0 ST platform. Array data was processed by Alt Analyze and Genespring software. No techinical replicates were performed. One of the outiler sample (HC2)  was excluded from further analysis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Array","Transcriptome"],"accessionIds":["PRJNA265079"],"identifiers":[{"scheme":"BioProject","value":"PRJNA265079"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA265079","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna265079:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA265079","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna266964","name":"High throughput analysis of three human adipose cell lines PAZ6, SGBS and SW872","displayTitle":"High throughput analysis of three human adipose cell lines PAZ6, SGBS and SW872","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Chouchane Lab, Genetic Medicine, Weill Cornell Medical College in Qatar"],"partnerOrganizations":[],"startYear":2014,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2014/11/12; operational lifecycle is not asserted.","statusEvidenceDate":"2014-11-12","description":"We report molecular characterization of human brown and white adipocytes. We showed that PAZ6 and SW872 cells exhibit classical molecular and phenotypic markers of brown and white adipocytes, respectively. However, SGBS cells presented a versatile phenotype of adipocyte Overall design: Sequencing of three human adipocytes cell lines (SGBS, SW872 and PAZ6) in undifferentiated and differentiated stages.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA266964"],"identifiers":[{"scheme":"BioProject","value":"PRJNA266964"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA266964","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna266964:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA266964","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna273322","name":"Thielaviopsis punctulata Genome sequencing and assembly","displayTitle":"Thielaviopsis punctulata Genome sequencing and assembly","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Thielaviopsis punctulata","leadOrganizations":["University of Illinois"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/04/03; operational lifecycle is not asserted.","statusEvidenceDate":"2015-04-03","description":"Draft assembly and annotation of Ceratocystis Radicicola","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA273322"],"identifiers":[{"scheme":"BioProject","value":"PRJNA273322"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA273322","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna273322:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA273322","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna273573","name":"Homo sapiens Transcriptome or Gene expression","displayTitle":"Homo sapiens Transcriptome or Gene expression","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Weill Cornell Medical College in Qatar"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/01/26; operational lifecycle is not asserted.","statusEvidenceDate":"2015-01-26","description":"Characterization of circular RNAs in Ovarian cancer","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA273573"],"identifiers":[{"scheme":"BioProject","value":"PRJNA273573"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA273573","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna273573:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA273573","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna277616","name":"human embryonic and mesenchymal stem cells","displayTitle":"human embryonic and mesenchymal stem cells","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Weill Cornell Medical College in Qatar"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/03/09; operational lifecycle is not asserted.","statusEvidenceDate":"2015-03-09","description":"Mesenchymal stem cells (MSC) are self-renewing multipotent cells which hold great potential in stem cell-based therapy. MSC can be derived from multiple adult tissues but require invasive harvesting and imply donor-to-donor differences. MSC derived from embryonic stem cells (ESC) may provide an alternative source not suffering from those limitations, but to what extend they correspond to the adult counterpart is not known. Here we characterized human ESC-derived MSC in-depth and compared them to human adult tissue-derived MSC (bone marrow BM-MSC) as well as to hESC using next-generation RNA sequencing. In MSC we observed enrichment of proteins involved in cell adhesion, wound healing, extracellular matrix generation, as well as vesicle-mediated transport and exosomes, with the latter pointing towards paracrine signaling. The enrichment and variety of developmental terms associated with MSC further suggest the support function in tissue regeneration. The observed differences between ESC-and adult tissue derived-MSC are similar in magnitude to those reported for MSC of different origin and the former may thus represent an alternative source for therapeutic applications.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Transcriptome"],"accessionIds":["PRJNA277616"],"identifiers":[{"scheme":"BioProject","value":"PRJNA277616"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA277616","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna277616:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA277616","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna278799","name":"Panulirus homarus Raw sequence reads","displayTitle":"Panulirus homarus Raw sequence reads","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Panulirus homarus","leadOrganizations":["Sultan Qaboos University, Muscat, Oman"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/03/19; operational lifecycle is not asserted.","statusEvidenceDate":"2015-03-19","description":"454 whole-genome sequencing was used to isolate large numbers of microsatellite markers for panulirus homarus.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA278799"],"identifiers":[{"scheme":"BioProject","value":"PRJNA278799"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA278799","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna278799:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA278799","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna278809","name":"Brucella melitensis Genome sequencing and assembly","displayTitle":"Brucella melitensis Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Brucella melitensis","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2016,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2016/08/10; operational lifecycle is not asserted.","statusEvidenceDate":"2016-08-10","description":"Brucella melitensis WGS","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA278809"],"identifiers":[{"scheme":"BioProject","value":"PRJNA278809"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA278809","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna278809:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA278809","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna279790","name":"Panulirus homarus Raw sequence reads","displayTitle":"Panulirus homarus Raw sequence reads","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Panulirus homarus","leadOrganizations":["Sultan Qaboos University, Muscat, Oman"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/03/29; operational lifecycle is not asserted.","statusEvidenceDate":"2015-03-29","description":"454 whole-genome sequencing was used to isolate large numbers of microsatellite markers for panulirus homarus.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA279790"],"identifiers":[{"scheme":"BioProject","value":"PRJNA279790"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA279790","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna279790:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA279790","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna282443","name":"Homo sapiens Genome sequencing and assembly","displayTitle":"Homo sapiens Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Ministry of National Guard Health Affairs / King Abdullah International Medical Research Center"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/04/28; operational lifecycle is not asserted.","statusEvidenceDate":"2015-04-28","description":"Genome sequence of an individual from the region of Saudi Arabia to facilitate these data can be use as a baseline for Saudi/Arabs genetics database. Furthermore, this project will be essential focusing on generating a significantly larger data set.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA282443"],"identifiers":[{"scheme":"BioProject","value":"PRJNA282443"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA282443","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna282443:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA282443","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna284175","name":"Helicobacter pylori strain:22 Genome sequencing and assembly","displayTitle":"Helicobacter pylori strain:22 Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Helicobacter pylori","leadOrganizations":["University of Hyderabad"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/09/03; operational lifecycle is not asserted.","statusEvidenceDate":"2015-09-03","description":"Comparative genomic analysis of H. pylori strains from Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA284175"],"identifiers":[{"scheme":"BioProject","value":"PRJNA284175"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA284175","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna284175:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA284175","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna287126","name":"Qatar barchan dunes 16S and metagenomics","displayTitle":"Qatar barchan dunes 16S and metagenomics","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"sand metagenome","leadOrganizations":["Cornell University"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/06/16; operational lifecycle is not asserted.","statusEvidenceDate":"2015-06-16","description":"This study aimed to survey the microbial ecology of microorganisms found in barchan sand dunes in Qatar. Barchan sand dunes are highly mobile, and as a result threaten stationary human population centers in arid regions. Bacteria-dominated biological soil crusts play a role in demobilizing dunes in many arid regions. Although biological soil crusts are not present on these dunes, a bacterial community is present within the dunes. To better understand the microbial populations within these dunes, we undertook 16S deep-sequencing of DNA extracts from sand samples from the crest, middle, and base of the windward faces of mobile barchan sand dunes near Doha, Qatar. Soil samples from beneath several dunes were also deep-sequenced. Shotgun metagenomic sequencing of two dunes was also conducted.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA287126"],"identifiers":[{"scheme":"BioProject","value":"PRJNA287126"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA287126","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna287126:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA287126","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna294996","name":"Genetic  variants of hepatitis B virus among chronic hepatitis B patients in Saudi Arabia","displayTitle":"Genetic  variants of hepatitis B virus among chronic hepatitis B patients in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Hepatitis B virus","leadOrganizations":["King Abdulaziz university"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/09/08; operational lifecycle is not asserted.","statusEvidenceDate":"2015-09-08","description":"1. Determining the variability in genotypes of HBV in Saudi Arabia.2. Identifying mutations in the pre S and S regions3. Phylogenetic, evolutionary analysis of the HBV strains found in Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA294996"],"identifiers":[{"scheme":"BioProject","value":"PRJNA294996"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294996","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna294996:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294996","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna305383","name":"Streptomyces jeddahensis strain:G25(2015) Genome sequencing and assembly","displayTitle":"Streptomyces jeddahensis strain:G25(2015) Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Streptomyces jeddahensis","leadOrganizations":["Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory","Goettingen Genomics Laboratory"],"partnerOrganizations":[],"startYear":2016,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2016/05/12; operational lifecycle is not asserted.","statusEvidenceDate":"2016-05-12","description":"Streptomyces sp. strain G25 was isolated from desert soil collected nearJeddah in Saudi-Arabia. Its genome was sequenced to identify genes responsiblefor its extraordinarily high storage of neutral lipids. This strain representsan interesting organism to study triacylglycerol synthesis in streptomycetes.It could also serve as potential feedstock for biodiesel production fromlignocellulose-derived saccharides, such as cellobiose.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA305383"],"identifiers":[{"scheme":"BioProject","value":"PRJNA305383"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA305383","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna305383:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA305383","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna305745","name":"Combined Genome and Transcriptome Sequencing to Identify Allelic Selection in Epithelial Ovarian Cancer","displayTitle":"Combined Genome and Transcriptome Sequencing to Identify Allelic Selection in Epithelial Ovarian Cancer","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Weill Cornell Medicine in Qatar"],"partnerOrganizations":[],"startYear":2015,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2015/12/11; operational lifecycle is not asserted.","statusEvidenceDate":"2015-12-11","description":"Identifying genes where a variant allele is preferentially expressed in tumors could lead to a better understanding of cancer biology and optimization of targeted therapy. However, tumor sample heterogeneity complicates standard approaches for detecting preferential allele expression. We therefore developed a novel approach combining genome and transcriptome sequencing data from the same sample that corrects for sample heterogeneity and identifies significant preferentially expressed alleles. We applied this analysis to epithelial ovarian cancer samples consisting of matched primary ovary and peritoneum and lymph node metastasis. We find that preferentially expressed variant alleles include germline and somatic variants, are shared at a relatively high frequency between patients and are in gene networks known to be involved in cancer processes. Analysis at a patient level identifies patient-specific preferentially expressed alleles in genes that are targets for known drugs. Analysis at a site level identifies patterns of site specific preferential allele expression with similar pathways being impacted in the primary and metastasis sites. We conclude that genes with preferentially expressed variant alleles can act as cancer drivers and that targeting those alleles could lead to new therapeutic strategies. Overall design: Three cancer patients, three tumor samples per patient from different sites, two normal tissue samples from two different patients, four cell lines.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other","Sequencing"],"accessionIds":["PRJNA305745"],"identifiers":[{"scheme":"BioProject","value":"PRJNA305745"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA305745","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna305745:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA305745","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna307583","name":"Sporosarcina koreensis strain:Q1 Genome sequencing and assembly","displayTitle":"Sporosarcina koreensis strain:Q1 Genome sequencing and assembly","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Sporosarcina koreensis","leadOrganizations":["Cornell University"],"partnerOrganizations":[],"startYear":2016,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2016/01/22; operational lifecycle is not asserted.","statusEvidenceDate":"2016-01-22","description":"Sporoscarcina strain isolated from sand from barchan dunes in Qatar. Strain was isolated on nitrogen-free minimal media supplemented with glucose and urea. Whole-genome shotgun sequencing was done via HiSeq and genome was assembled using Velvet.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA307583"],"identifiers":[{"scheme":"BioProject","value":"PRJNA307583"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA307583","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna307583:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA307583","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna309930","name":"Metagenomic analysis and variation between the different taxa communities inhabiting the soil horizons of Mecca region, Saudi Arabia","displayTitle":"Metagenomic analysis and variation between the different taxa communities inhabiting the soil horizons of Mecca region, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"soil metagenome","leadOrganizations":["Biological Sciences Department, Faculty of Science, University of Jeddah, Jeddah 21454, Saudi Arabia","Cairo University","Tarek A. A. Moussa"],"partnerOrganizations":[],"startYear":2016,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2016/01/27; operational lifecycle is not asserted.","statusEvidenceDate":"2016-01-27","description":"This study aimed to analyze the diversity of soil-inhabiting taxa (plant, animal, fungi, nematode and insects) in Mecca Region, Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA309930"],"identifiers":[{"scheme":"BioProject","value":"PRJNA309930"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA309930","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna309930:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA309930","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna316859","name":"Escherichia coli O25b:H4 Genome sequencing and assembly","displayTitle":"Escherichia coli O25b:H4 Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Escherichia coli O25b:H4","leadOrganizations":["Igenbio, Inc"],"partnerOrganizations":[],"startYear":2016,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2016/06/15; operational lifecycle is not asserted.","statusEvidenceDate":"2016-06-15","description":"Genome Sequence and Comparative Pathogenic Determinants of Uropathogenic Escherichia coli O25b:H4, a Clinical Isolate from Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA316859"],"identifiers":[{"scheme":"BioProject","value":"PRJNA316859"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA316859","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna316859:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA316859","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna321092","name":"marine sediment metagenome Metagenomic assembly","displayTitle":"marine sediment metagenome Metagenomic assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"marine sediment metagenome","leadOrganizations":["King Abdullah University Science and Technology"],"partnerOrganizations":[],"startYear":2016,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2016/05/10; operational lifecycle is not asserted.","statusEvidenceDate":"2016-05-10","description":"Metagenomics as a preliminary screen for antibiotic bioprospecting Coastal sediment of the Red Sea. 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operational lifecycle is not asserted.","statusEvidenceDate":"2017-03-02","description":"Sequencing of Influenza A viruses collected at the Hajj for the characterisation genetic diversity","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA377792"],"identifiers":[{"scheme":"BioProject","value":"PRJNA377792"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA377792","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna377792:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA377792","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna379064","name":"Boswellia sacra Genome sequencing and assembly","displayTitle":"Boswellia sacra Genome sequencing and assembly","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Boswellia sacra","leadOrganizations":["University of Nizwa"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/05/28; 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operational lifecycle is not asserted.","statusEvidenceDate":"2017-03-14","description":"Description of microbial community structure in the crude oil contaminated soil in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA379195"],"identifiers":[{"scheme":"BioProject","value":"PRJNA379195"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA379195","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna379195:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA379195","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna380997","name":"Acinetobacter baumannii Genome sequencing and assembly","displayTitle":"Acinetobacter baumannii Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Acinetobacter baumannii","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/03/09; operational lifecycle is not asserted.","statusEvidenceDate":"2018-03-09","description":"Whole-genome sequencing, assembly and comparison of clinical Acinetobacter baumannii isolates from two major hospitals in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA380997"],"identifiers":[{"scheme":"BioProject","value":"PRJNA380997"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA380997","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna380997:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA380997","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna382218","name":"Pseudomonas sp. AK6U Genome sequencing and assembly","displayTitle":"Pseudomonas sp. AK6U Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Pseudomonas sp. AK6U","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/04/08; operational lifecycle is not asserted.","statusEvidenceDate":"2017-04-08","description":"The Gram-negative genus Pseudomonas describes an environmentally widespread taxon. Members of the genus include metabolically diverse species being proficient at mineralizing a wide range of recalcitrant hydrocarbon compounds making them useful chassis for engineering whole cell catalysts. As a first stage in developing such whole cell catalysts for hydrocarbon-applications in a strain adapted to the harsh environmental conditions of the Arabian Peninsula, we present the complete chromosomal genome sequence of Pseudomonas strain AK6U. This strain was isolated from soil contaminated with lubricating oil, benzene and diesel in Fahaheel district, Kuwait. It produces rhamnolipid biosurfactants that support hydrocarbon catabolism and can desulfurize dibenzothiophene which is the sulfur-hydrocarbon species most resistant to removal by hydrotreatment.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA382218"],"identifiers":[{"scheme":"BioProject","value":"PRJNA382218"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA382218","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna382218:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA382218","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna383024","name":"Arabian Gulf coral microbiome","displayTitle":"Arabian Gulf coral microbiome","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/04/15; operational lifecycle is not asserted.","statusEvidenceDate":"2017-04-15","description":"Metagenome analysis for the microbiome of Acropora downingi and Porites horrisoni inhabiting inshore and offshore coral reef systems north of the Arabian Gulf in teh Kuwaiti water. Samples were collected during July and October 2011 and January 2012 from 5 sites.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA383024"],"identifiers":[{"scheme":"BioProject","value":"PRJNA383024"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA383024","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna383024:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA383024","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna383026","name":"Arabian Gulf coral virome","displayTitle":"Arabian Gulf coral virome","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/04/15; operational lifecycle is not asserted.","statusEvidenceDate":"2017-04-15","description":"This is the first virome of Acropora downingi and Porites horrisoni sampled from 5 inshore and offshore coral reefs sampled from Kuwaiti water north of the Arabian Gulf. Sampled were collected on July and October 2011 and January 2012.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA383026"],"identifiers":[{"scheme":"BioProject","value":"PRJNA383026"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA383026","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna383026:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA383026","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna383067","name":"Kuwaiti Exomes","displayTitle":"Kuwaiti Exomes","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/04/16; operational lifecycle is not asserted.","statusEvidenceDate":"2017-04-16","description":"Multiple sclerosis case control Exome sequencing","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Exome","Array","Genome"],"accessionIds":["PRJNA383067"],"identifiers":[{"scheme":"BioProject","value":"PRJNA383067"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA383067","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna383067:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA383067","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna385755","name":"Anopheles dthali Raw sequence reads","displayTitle":"Anopheles dthali Raw sequence reads","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Anopheles dthali","leadOrganizations":["National Center for Vector-Borne diseases"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/05/08; operational lifecycle is not asserted.","statusEvidenceDate":"2017-05-08","description":"Ecological and genetic determinants of malaria transmitting behaviors in the Anopheles dthali in Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA385755"],"identifiers":[{"scheme":"BioProject","value":"PRJNA385755"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA385755","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna385755:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA385755","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna386092","name":"MRSA from Riyadh","displayTitle":"MRSA from Riyadh","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Mohammed Bin Rashid University of Medicine and Health Sciences"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/05/10; operational lifecycle is not asserted.","statusEvidenceDate":"2017-05-10","description":"Full genome sequencing of Staphylococcus aureus methicillin resistant isolates from Riyadh Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA386092"],"identifiers":[{"scheme":"BioProject","value":"PRJNA386092"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA386092","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna386092:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA386092","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna387156","name":"Mers-cov Genome sequencing and assembly","displayTitle":"Mers-cov Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Betacoronavirus 1","leadOrganizations":["Ministry of Agriculture"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/05/18; operational lifecycle is not asserted.","statusEvidenceDate":"2017-05-18","description":"Mers-cov Camel nasal swab isolate, from Riyadh, Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA387156"],"identifiers":[{"scheme":"BioProject","value":"PRJNA387156"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA387156","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna387156:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA387156","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna396214","name":"Metagenome of dromedary camel upper respiratory samples from the United Arab Emirates","displayTitle":"Metagenome of dromedary camel upper respiratory samples from the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"upper respiratory tract metagenome","leadOrganizations":["Centers for Disease Control and Prevention"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/07/28; operational lifecycle is not asserted.","statusEvidenceDate":"2017-07-28","description":"This project is to identify viral pathogens from the upper respiratory tract of dromedary camels. Samples were taken from camels at a live animal market in Abu Dhabi, UAE, and screened for MERS-CoV. Those samples were then sequenced and analyzed for additional viruses.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA396214"],"identifiers":[{"scheme":"BioProject","value":"PRJNA396214"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA396214","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna396214:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA396214","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna396267","name":"Phoenix dactylifera cultivar:Naghal Genome sequencing","displayTitle":"Phoenix dactylifera cultivar:Naghal Genome sequencing","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Phoenix dactylifera","leadOrganizations":["University of Nizwa"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/07/29; operational lifecycle is not asserted.","statusEvidenceDate":"2017-07-29","description":"Date palm draft genome of Naghal cultivar from Oman","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA396267"],"identifiers":[{"scheme":"BioProject","value":"PRJNA396267"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA396267","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna396267:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA396267","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna396270","name":"Phoenix dactylifera cultivar:Khanizi Genome sequencing and assembly","displayTitle":"Phoenix dactylifera cultivar:Khanizi Genome sequencing and assembly","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Phoenix dactylifera","leadOrganizations":["University of Nizwa"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/08/01; operational lifecycle is not asserted.","statusEvidenceDate":"2019-08-01","description":"whole genome of phoenix dactylifera cultivar Khanizi growing in Oman","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA396270"],"identifiers":[{"scheme":"BioProject","value":"PRJNA396270"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA396270","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna396270:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA396270","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna40349","name":"Phoenix dactylifera Genome sequencing","displayTitle":"Phoenix dactylifera Genome sequencing","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Phoenix dactylifera","leadOrganizations":["Weill Cornell Medical College in Qatar"],"partnerOrganizations":[],"startYear":2009,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2009/10/09; operational lifecycle is not asserted.","statusEvidenceDate":"2009-10-09","description":"Weill Cornell Medical College in Qatar has sequenced the genome of Date Palm, khalas cultivar, by whole genome shotgun sequencing to 25X coverage. The sequenced genome will help in complete understanding of date palm genetics and also aid in developing high yielding, disease resistant cultivars.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA40349"],"identifiers":[{"scheme":"BioProject","value":"PRJNA40349"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA40349","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna40349:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA40349","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna407796","name":"Arabidopsis thaliana Transcriptome or Gene expression","displayTitle":"Arabidopsis thaliana Transcriptome or Gene expression","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Arabidopsis thaliana","leadOrganizations":["King Abdulaziz University"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/09/18; operational lifecycle is not asserted.","statusEvidenceDate":"2017-09-18","description":"Biological material involved arabidopsis WT (Col), the knockout T-DNA insertion (SALK_150614) mutant (namely KOERF109) and over-expression lines of ERF109 gene (CS2102255) (OEERF109) of locus AT4G34410 provided by the SALK Institute, Genomic Analysis Laboratory (SIGnAL) (http://signal.salk.edu/tdnaprimers.2.html). Plantlets were grown from seed in a growth chamber for two weeks under the following growth conditions. First, seeds of the three genotypes were surface sterilized, sown in Petri dishes containing MS medium. The plates were kept in the dark at 4°C for 2 days and then shifted to 21 ± 2°C (day/night) under light intensity of ~175 umoles m-2sec-1 and a 16-h-light/8-h-dark cycle where plantlets were allowed to grow for 12 more days. Knockout mutant was screened for homozygosity by standard PCR approach, while seeds of the over-expression line were homozygous. Sequences of PCR primers and reaction conditions were recovered from Arabidopsis database (TAIR, http://www.arabidopsis.org/).Salt stress experiments were conducted at the laboratories of the Department of Biological Sciences, KAU, Jeddah, Saudi Arabia. In order to harvest transcriptomes under salt stress, 2-wk-old plantlets of KOERF109 and OEERF109 lines as well as the WT (Col) with homogeneous performance were transferred to pots (9 cm) filled with soil mix (1 soil : 1 vermiculite), where salt stress experiment started. Two-wk-old control untreated and salt-stressed plantlets were allowed to grow at the above mentioned growth conditions. Control plantlets were irrigated daily with deionized double distilled water and allowed to grow for two more weeks. While, salt-stressed plantlets were initially irrigated daily with salt concentration of 50 mM NaCl for one week. Then, two incremental increases of salt stress was made as recommended by Munns41. An increase of 75 mM NaCl was made for 3-wk-old plantlets, which were left to grow for one more week. Another increase of 75 mM NaCl was made for 4-wk-old plantlets which is the target salt concentration (200 mM NaCl) for RNA-Seq analysis. At the same day of reaching the target salt concentration, leaf samples of the 4-wk-old plantlets were harvested 2 and 12 h. Leaf samples of the control unstressed 4-wk-old plantlets were harvested concurrently with those harvested 12 h after salt treatment.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA407796"],"identifiers":[{"scheme":"BioProject","value":"PRJNA407796"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA407796","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna407796:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA407796","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna412146","name":"Complete Genome Sequences of Bacteria from Red Sea","displayTitle":"Complete Genome Sequences of Bacteria from Red Sea","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/09/26; operational lifecycle is not asserted.","statusEvidenceDate":"2017-09-26","description":"We sequenced genomes isolated from the Red Sea, specifically three types of sediments: mangrove mud (MN), microbial mat (MM), and barren soil (BS) collected from Rabigh harbor lagoon (39°0′35.762′′ E, 22°45′5.582′′ N) and Al-Kharrar lagoon (38°54′39.638′′ E, 22°54′50.251′′ N) in Saudi Arabia. MN mud was sampled from the coastal lagoon of the Red Sea alongside mangrove tree. MM was sampled approximately 7.5 m away from the coastal lagoon. BS refers to sediments with no contact with lagoon water at high tide.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA412146"],"identifiers":[{"scheme":"BioProject","value":"PRJNA412146"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA412146","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna412146:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA412146","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna421388","name":"Mcr-1 mediated colistin resistant Escherichia coli ST95 from Qatar","displayTitle":"Mcr-1 mediated colistin resistant Escherichia coli ST95 from Qatar","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Escherichia coli","leadOrganizations":["University of Queensland"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/12/21; operational lifecycle is not asserted.","statusEvidenceDate":"2017-12-21","description":"Complete genome of an mcr-1 positive Escherichia coli strain from the major pandemic sequence type 95 (ST95) lineage. E. coli strain MS8345 was isolated from the respiratory tract of an intubated male patient in Qatar.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA421388"],"identifiers":[{"scheme":"BioProject","value":"PRJNA421388"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA421388","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna421388:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA421388","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna427409","name":"Sequencing of Phoenix Palms","displayTitle":"Sequencing of Phoenix Palms","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Weill Cornell Medicine in Qatar"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/12/24; operational lifecycle is not asserted.","statusEvidenceDate":"2017-12-24","description":"Sequencing of Genome of Phoenix Palms","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA427409"],"identifiers":[{"scheme":"BioProject","value":"PRJNA427409"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA427409","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna427409:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA427409","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna427666","name":"Metagenomics of oil contaminated soil samples planted with Alfalfa and Barley","displayTitle":"Metagenomics of oil contaminated soil samples planted with Alfalfa and Barley","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2017,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2017/12/27; operational lifecycle is not asserted.","statusEvidenceDate":"2017-12-27","description":"The role of rhizosphere microbial communities in the degradation of hydrocarbons remains poorly understood and is a field of active study. We used next generation sequencing to explore the rhizosphere microbial diversity in the alfalfa and barley planted oil contaminated soil samples. The findings of the current study will be useful in understanding the micro-flora responsible for oil degradation, and thus can help in designing appropriate phytoremediation strategies for oil contaminated lands.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA427666"],"identifiers":[{"scheme":"BioProject","value":"PRJNA427666"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA427666","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna427666:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA427666","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna431874","name":"Microbial communities of desert plants Targeted loci environmental","displayTitle":"Microbial communities of desert plants Targeted loci environmental","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"plant metagenome","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/01/28; operational lifecycle is not asserted.","statusEvidenceDate":"2018-01-28","description":"Deserts in Saudi Arabia are one of the most hostile places for plant growth. However, desert plants can still grow under these extreme conditions and might reveal interesting survival strategies. In this study, we examined the soil, rhizosphere and endosphere microbiome of four native desert plants, Tribulus terrestris, Zygophyllum simplex, Panicum turgidum and Euphorbia granulate, at two sites, Midwest (Al Wahbah) and Southwest (Jizan) of Saudi Arabia, with different soil physicochemical properties.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Targeted loci environmental","Sequencing","Genome"],"accessionIds":["PRJNA431874"],"identifiers":[{"scheme":"BioProject","value":"PRJNA431874"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA431874","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna431874:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA431874","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna432298","name":"Escherichia coli strain:C-91 | isolate:C-91 Genome sequencing and assembly","displayTitle":"Escherichia coli strain:C-91 | isolate:C-91 Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Escherichia coli","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/01/31; operational lifecycle is not asserted.","statusEvidenceDate":"2018-01-31","description":"Colistin resistant clinical E. coli","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA432298"],"identifiers":[{"scheme":"BioProject","value":"PRJNA432298"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA432298","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna432298:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA432298","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna432649","name":"Soil samples from biowashing-biopile processes Raw sequence reads","displayTitle":"Soil samples from biowashing-biopile processes Raw sequence reads","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"soil metagenome","leadOrganizations":["HanKuk University of Foreign Studies"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/02/02; operational lifecycle is not asserted.","statusEvidenceDate":"2018-02-02","description":"Biowashing and biopile processes were designed and evaluated for remediation of crude oil in Kuwait soil. The bacterial community structure in either enrichment culture and soil samples was investigated by using high throughput sequencing and phylogenetic analysis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA432649"],"identifiers":[{"scheme":"BioProject","value":"PRJNA432649"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA432649","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna432649:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA432649","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna449458","name":"Pool-sequencing of two Schistosoma mansoni chronotypes from Oman","displayTitle":"Pool-sequencing of two Schistosoma mansoni chronotypes from Oman","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["University of Perpignan Via Domitia"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/04/10; operational lifecycle is not asserted.","statusEvidenceDate":"2018-04-10","description":"Comparative population genomics of two chronotypes of the metazoan parasite Schistosoma mansoni","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA449458"],"identifiers":[{"scheme":"BioProject","value":"PRJNA449458"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA449458","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna449458:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA449458","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna451073","name":"Ignatzschineria Genome sequencing and assembly","displayTitle":"Ignatzschineria Genome sequencing and assembly","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Ignatzschineria","leadOrganizations":["The University of Hong Kong"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/05/12; operational lifecycle is not asserted.","statusEvidenceDate":"2018-05-12","description":"Isolation from necrotic foot tissues of dromedaries (Camelus dromedarius) and associated maggots in Dubai, United Arab Emirates","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA451073"],"identifiers":[{"scheme":"BioProject","value":"PRJNA451073"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA451073","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna451073:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA451073","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna454555","name":"TNF alpha association studies in Kuwaiti population","displayTitle":"TNF alpha association studies in Kuwaiti population","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/05/02; operational lifecycle is not asserted.","statusEvidenceDate":"2018-05-02","description":"TNF alpha studies in Kuwaiti population","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Variation","Sequencing","Genome"],"accessionIds":["PRJNA454555"],"identifiers":[{"scheme":"BioProject","value":"PRJNA454555"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA454555","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna454555:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA454555","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna472694","name":"Sequencing of maleand female flowersand leaves in Date Palm (Phoenix dactylifera)","displayTitle":"Sequencing of maleand female flowersand leaves in Date Palm (Phoenix dactylifera)","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Phoenix dactylifera","leadOrganizations":["Weill Cornell Medicine in Qatar"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/05/23; operational lifecycle is not asserted.","statusEvidenceDate":"2018-05-23","description":"Comparison of gene expression in male and female date palm flowers","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA472694"],"identifiers":[{"scheme":"BioProject","value":"PRJNA472694"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA472694","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna472694:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA472694","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna485025","name":"Brucella melitensis strain:KSA_BM_07 Genome sequencing and assembly","displayTitle":"Brucella melitensis strain:KSA_BM_07 Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Brucella melitensis","leadOrganizations":["King Abdullah International Medical Research Center (KAIMRC)"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/08/29; operational lifecycle is not asserted.","statusEvidenceDate":"2018-08-29","description":"The intracellular Gram-negative bacterium Brucella melitensis causes a zoonotic disease in human originating from animals. Here, we report the whole-genome sequence (WGS) of B. melitensis strain KSA_BM_07, isolated from sheep in March 2017 in Huraymila, Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA485025"],"identifiers":[{"scheme":"BioProject","value":"PRJNA485025"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA485025","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna485025:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA485025","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna487099","name":"Viral metagenomics survey of bats from Saudi Arabia","displayTitle":"Viral metagenomics survey of bats from Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Columbia University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/08/21; operational lifecycle is not asserted.","statusEvidenceDate":"2018-08-21","description":"Bats are implicated as reservoirs for a wide range of zoonotic viruses including SARS and MERS coronaviruses, ebola, marburg, lyssa, nipah and hendra viruses. Accordingly, many One Health surveillance and discovery programs focus on bat viromics. Here we report virome analyses of bats from the Kingdom of Saudi Arabia (KSA). Unbiased high throughput sequencing of 72 bat fecal samples from four bat species Rhinopoma hardwickii (R. hardwickii), Taphozous perforatus (T. perforates), Eidolon helvum (E. helvum) and Rousettus aegyptiacus (R. aegyptiacus) revealed molecular evidence of a diverse set of viral families, including whole genomes of hepatovirus, rotavirus, polyomavirus, papillomavirus and partial genomes of astrovirus, sapovirus, teschovirus, parechovirus, coronavirus, adenovirus, paramyxovirus and chuvirus. Additionally, we also discovered KSA-Hepe-Astrovirus, which appears to be similar to a recently discovered basto like virus, with a genomic organization similar to Hepeviridae and homology to Hepeviridae in ORF1 and homology to Astroviridae in ORF2. The Hepe-Astrovirus also represents a phylogenetic bridge between Hepeviridae and Astroviridae.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA487099"],"identifiers":[{"scheme":"BioProject","value":"PRJNA487099"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA487099","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna487099:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA487099","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna487209","name":"Core Microbiota Shift of Fish Influenced by Oxidative Stress","displayTitle":"Core Microbiota Shift of Fish Influenced by Oxidative Stress","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdulaziz University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/08/22; operational lifecycle is not asserted.","statusEvidenceDate":"2018-08-22","description":"The main objective of this work was to explore the influence of pollution oxidative stress on the diversities and complexities of gut communities in wild fish species from the Red Sea costal of Jeddah City in Saudi Arabia and correlate the variation in microbial diversity to detoxifying antioxidant enzymatic activities compared to referenced unstressed samples.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA487209"],"identifiers":[{"scheme":"BioProject","value":"PRJNA487209"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA487209","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna487209:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA487209","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna491387","name":"Burkholderia cenocepacia isolate:bc-1386 | cultivar:Leila Vali Genome sequencing and assembly","displayTitle":"Burkholderia cenocepacia isolate:bc-1386 | cultivar:Leila Vali Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Burkholderia cenocepacia","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/09/17; operational lifecycle is not asserted.","statusEvidenceDate":"2018-09-17","description":"Our objectives were to characterize multidrug resistant Bcc isolates from hospitalized patients in Kuwait and to analyze their genetic relatedness.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA491387"],"identifiers":[{"scheme":"BioProject","value":"PRJNA491387"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA491387","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna491387:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA491387","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna492764","name":"Escherichia coli strain:Kuwait C-91 Genome sequencing and assembly","displayTitle":"Escherichia coli strain:Kuwait C-91 Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Escherichia coli","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/07/26; operational lifecycle is not asserted.","statusEvidenceDate":"2021-07-26","description":"Escherichia coli Strain Kuwait-C91 clinical isolate","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA492764"],"identifiers":[{"scheme":"BioProject","value":"PRJNA492764"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA492764","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna492764:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA492764","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna503939","name":"Genome Sequencing of Haloxylon salicornicum","displayTitle":"Genome Sequencing of Haloxylon salicornicum","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Haloxylon salicornicum","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/11/06; operational lifecycle is not asserted.","statusEvidenceDate":"2018-11-06","description":"The study aims to provide information about the genes of this native plant grown in an arid ecosystem","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA503939"],"identifiers":[{"scheme":"BioProject","value":"PRJNA503939"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA503939","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna503939:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA503939","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna507603","name":"Differentiation of human embryonic stem cells into mesenchymal stem cells","displayTitle":"Differentiation of human embryonic stem cells into mesenchymal stem cells","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Weill Cornell Medical College in Qatar"],"partnerOrganizations":[],"startYear":2018,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2018/11/29; operational lifecycle is not asserted.","statusEvidenceDate":"2018-11-29","description":"Differentiation of human embryonic stem cells into mesenchymal stem cells","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA507603"],"identifiers":[{"scheme":"BioProject","value":"PRJNA507603"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA507603","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna507603:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA507603","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna514910","name":"E. coli Genome SIAU-MY","displayTitle":"E. coli Genome SIAU-MY","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Abdulaziz University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/01/13; operational lifecycle is not asserted.","statusEvidenceDate":"2019-01-13","description":"Genomic characterization of multidrug-resistant clinical isolates from western Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA514910"],"identifiers":[{"scheme":"BioProject","value":"PRJNA514910"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA514910","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna514910:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA514910","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna518024","name":"Identification of DNA sequences associated with pathogenicity island III536 locus in Uropathogenic Escherichia coli isolate","displayTitle":"Identification of DNA sequences associated with pathogenicity island III536 locus in Uropathogenic Escherichia coli isolate","aliases":[],"countries":["Bahrain"],"regionLabel":"Bahrain","geographicScope":"Bahrain connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["University of Bahrain"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/01/31; operational lifecycle is not asserted.","statusEvidenceDate":"2019-01-31","description":"Identification of virulence determinants in Uropathogenic Escherichia coli isolates","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA518024"],"identifiers":[{"scheme":"BioProject","value":"PRJNA518024"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA518024","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna518024:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA518024","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna522946","name":"Mycobacterium riyadhense_Whole Genome Sequencing","displayTitle":"Mycobacterium riyadhense_Whole Genome Sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["King Faisal Specialist Hospital and Research Centre"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/02/18; operational lifecycle is not asserted.","statusEvidenceDate":"2019-02-18","description":"Mycobacterium riyadhense is an emerging non tuberculous mycobacterial pathogen responsible to cause both pulmonary and extrapulmonary diseases in any age group. Globally few dozens of cases only reported and the pathogen is geographically confined to Saudi Arabia. Although, several genetic and clinical resemblance exist between Mycobacterium tuberculosis and Mycobacterium riyadhense, the real threat of this pathogen is till date underestimated. This project focus to explore the evolutionary changes, genetic relatedness and possible transmission dynamics of this pathogen following clinical cases.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA522946"],"identifiers":[{"scheme":"BioProject","value":"PRJNA522946"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA522946","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna522946:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA522946","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna524435","name":"wastewater metagenome sequence reads","displayTitle":"wastewater metagenome sequence reads","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"wastewater metagenome","leadOrganizations":["Massachusetts Institute of Technology"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/02/27; operational lifecycle is not asserted.","statusEvidenceDate":"2019-02-27","description":"upstream residential and wwtp metagenomes from USA, Kuwait, South Korea","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA524435"],"identifiers":[{"scheme":"BioProject","value":"PRJNA524435"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA524435","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna524435:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA524435","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna525551","name":"Identification of DNA sequences associated with pathogenicity island III536 locus in Uropathogenic Escherichia coli isolate","displayTitle":"Identification of DNA sequences associated with pathogenicity island III536 locus in Uropathogenic Escherichia coli isolate","aliases":[],"countries":["Bahrain"],"regionLabel":"Bahrain","geographicScope":"Bahrain connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Escherichia coli","leadOrganizations":["University of Bahrain"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/03/05; operational lifecycle is not asserted.","statusEvidenceDate":"2019-03-05","description":"Identification of DNA sequences associated with pathogenicity island III536 locus in Uropathogenic Escherichia coli isolate","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA525551"],"identifiers":[{"scheme":"BioProject","value":"PRJNA525551"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA525551","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna525551:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA525551","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna526399","name":"Transcriptome of circANKRD12 knockdown cancer cells and control","displayTitle":"Transcriptome of circANKRD12 knockdown cancer cells and control","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["weill cornell medicine- qatar"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/03/11; operational lifecycle is not asserted.","statusEvidenceDate":"2019-03-11","description":"Molecular phenotyping of circularANKRD12 RNA in breast, ovarian, lung cancer cell lines. RNAseq analysis was performed on circANKRD12 silenced MDA-MB-231, SKOV3, OVCAR3, NCI-H226 cell lines. The data provide functional and molecular characterization of circANKRD12 in the human cancer cell.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA526399"],"identifiers":[{"scheme":"BioProject","value":"PRJNA526399"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA526399","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna526399:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA526399","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna527474","name":"Commiphora gileadensis RefSeq Genome","displayTitle":"Commiphora gileadensis RefSeq Genome","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Commiphora gileadensis","leadOrganizations":["NCBI","NCBI RefSeq Genome Project","UoN Chair of Oman Medicinal Plant and Marine Natural Products, University of Oman"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/03/16; operational lifecycle is not asserted.","statusEvidenceDate":"2019-03-16","description":"Commiphora gileadensis genome reference project","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["RefSeq Genome","Sequencing","Genome"],"accessionIds":["PRJNA527474"],"identifiers":[{"scheme":"BioProject","value":"PRJNA527474"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA527474","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna527474:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA527474","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna527560","name":"Commiphora foliacea RefSeq Genome","displayTitle":"Commiphora foliacea RefSeq Genome","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Commiphora foliacea","leadOrganizations":["NCBI","NCBI RefSeq Genome Project","UoN Chair of Oman Medicinal Plant and Marine Natural Products, University of Oman"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/03/16; operational lifecycle is not asserted.","statusEvidenceDate":"2019-03-16","description":"Commiphora foliacea genome reference project","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["RefSeq Genome","Sequencing","Genome"],"accessionIds":["PRJNA527560"],"identifiers":[{"scheme":"BioProject","value":"PRJNA527560"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA527560","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna527560:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA527560","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna531683","name":"Tomato-infecting geminiviruses","displayTitle":"Tomato-infecting geminiviruses","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Solanum lycopersicum","leadOrganizations":["Sultan Qaboos University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/04/09; operational lifecycle is not asserted.","statusEvidenceDate":"2019-04-09","description":"Identification of geminivirses in tomato from Oman","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA531683"],"identifiers":[{"scheme":"BioProject","value":"PRJNA531683"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA531683","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna531683:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA531683","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna540061","name":"Sponges associated bacteria and their potential biotechnological applications","displayTitle":"Sponges associated bacteria and their potential biotechnological applications","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"sponge metagenome","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/04/27; operational lifecycle is not asserted.","statusEvidenceDate":"2019-04-27","description":"Sponges are one of the simplest and oldest multicellular metazoa, they are primitive sedentary and exclusively aquatic animal that forms close associations with different microbes. Sponge associated microbiomes have a huge role in different fields and identifying these microbiomes could reveal their potential biotechnological application. The bacteriome of eight different sponge species inhabiting the Arabian Gulf, one of the world hottest seas, were investigated using culture dependent and culture independent methods. The amplicon metagenome analysis using MiSeq showed various bacterial groups dominating the different sponge species.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenomic assembly","Sequencing","Genome"],"accessionIds":["PRJNA540061"],"identifiers":[{"scheme":"BioProject","value":"PRJNA540061"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA540061","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna540061:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA540061","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna542588","name":"High resolution protein-protein interaction mapping using all-versus-all sequencing (AVA-seq)","displayTitle":"High resolution protein-protein interaction mapping using all-versus-all sequencing (AVA-seq)","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Weill Cornell Medicine in Qatar"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/05/13; operational lifecycle is not asserted.","statusEvidenceDate":"2019-05-13","description":"Development of a bacterial two-hybrid system that fuses proteins to be tested for interactions on to a single vector allowing for next-generation sequencing. Here the system is demonstrated on 3 known human protein interactions.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA542588"],"identifiers":[{"scheme":"BioProject","value":"PRJNA542588"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA542588","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna542588:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA542588","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna544438","name":"Extensively drug-resistant Klebsiella pneumoniae and E. coli from Oman in 2015","displayTitle":"Extensively drug-resistant Klebsiella pneumoniae and E. coli from Oman in 2015","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Karolinska Institutet"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/05/23; 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operational lifecycle is not asserted.","statusEvidenceDate":"2019-11-01","description":"Saline BTEX enrichment culture from Kuwait petroleum well waste pond","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA545514"],"identifiers":[{"scheme":"BioProject","value":"PRJNA545514"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA545514","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna545514:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA545514","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna546104","name":"Proto-dolomite formation in microbial consortia dominated by Halomonas strains","displayTitle":"Proto-dolomite formation in microbial consortia dominated by Halomonas strains","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Toronto"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/06/04; operational lifecycle is not asserted.","statusEvidenceDate":"2019-06-04","description":"The objectives of this study were to assess the ability of two microbial consortia to form dolomite using enrichment culture experiments, mineralogy, and metagenomics. Different culturing experiments of pure cultures provided evidence for the microbial role in dolomite formation. However, the culturing experiments have been limited in scope and do not fully address the possible interactions of the naturally occurring microbial communities; consequently, the ability of microbes as a community to form dolomite. Our experiments focused on investigating microbial composition as affected by microbial community interactions through culturing aerobic heterotrophs from the top hypersaline sediments of Al-Khiran sabkha in Kuwait, a modern dolomite-forming environment.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA546104"],"identifiers":[{"scheme":"BioProject","value":"PRJNA546104"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA546104","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna546104:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA546104","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna554447","name":"Molecular Characterization of pH1N1 in Qatar","displayTitle":"Molecular Characterization of pH1N1 in Qatar","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Qatar University","Biomedical Research center"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/07/13; operational lifecycle is not asserted.","statusEvidenceDate":"2019-07-13","description":"The project aims to study the molecular characterization of pH1N1 viruses circulated during 2015-2017 in Qatar. however, the main aim of the study is estimating pH1N1 diversity at sub-consensus level using sequencing data generated by NGS.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA554447"],"identifiers":[{"scheme":"BioProject","value":"PRJNA554447"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA554447","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna554447:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA554447","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna554702","name":"Gut microbiome of healthy, native, Arab Kuwaitis","displayTitle":"Gut microbiome of healthy, native, Arab Kuwaitis","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["The University of Melbourne"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/07/15; operational lifecycle is not asserted.","statusEvidenceDate":"2019-07-15","description":"Characterising the “normal” gut microbiota in different geographical regions provides a comprehensive picture of the microbiota from a global perspective which is important for improving our understanding of the relationship of dysbiosis to specific health conditions as it relates to different populations. There is limited data describing the gut microbiota of people in the Arabian Peninsula, of which Kuwait is a part. In this study we describe the gut microbiota of native adult Arab Kuwaitis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA554702"],"identifiers":[{"scheme":"BioProject","value":"PRJNA554702"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA554702","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna554702:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA554702","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna556149","name":"Abha Soil Metagenome","displayTitle":"Abha Soil Metagenome","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"soil metagenome","leadOrganizations":["Aligarh Muslim University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/07/23; operational lifecycle is not asserted.","statusEvidenceDate":"2019-07-23","description":"Abha Soil is the semi arid agricultural soil of Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA556149"],"identifiers":[{"scheme":"BioProject","value":"PRJNA556149"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA556149","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna556149:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA556149","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna556182","name":"soil metagenome Targeted loci","displayTitle":"soil metagenome Targeted loci","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"soil metagenome","leadOrganizations":["Aligarh Muslim University"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/07/23; operational lifecycle is not asserted.","statusEvidenceDate":"2019-07-23","description":"Abha is a semi-arid region of Saudi Arabia known for Agriculture in otherwise arid region of the country","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Targeted Locus (Loci)","Sequencing","Genome"],"accessionIds":["PRJNA556182"],"identifiers":[{"scheme":"BioProject","value":"PRJNA556182"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA556182","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna556182:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA556182","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna556301","name":"Characterisation of a multiresistant Shigella flexneri serotype 1 isolate from a child in Kuwait","displayTitle":"Characterisation of a multiresistant Shigella flexneri serotype 1 isolate from a child in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["The University of Melbourne"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/07/23; operational lifecycle is not asserted.","statusEvidenceDate":"2019-07-23","description":"A Shigella flexneri serotype 1 was cultured from the stool of a 1 year-old Syrian girl admitted in Al-Sabah hospital, Kuwait, in April 2019 with severe diarrhea and dehydration. The isolate was multi-drug-resistant. The child recovered after treatment with cefotaxime. Whole genome sequencing of the isolate showed that it carried five different beta lactamases belonging to three different classes - A, C and D. To our knowledge, this is the first report of a bacterial isolate carrying multiple beta lactamases as previous reports showed not more than two beta lactamases in a bacterial isolate.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA556301"],"identifiers":[{"scheme":"BioProject","value":"PRJNA556301"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA556301","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna556301:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA556301","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna557915","name":"Teucrium mascatense RefSeq Genome","displayTitle":"Teucrium mascatense RefSeq Genome","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Teucrium mascatense","leadOrganizations":["NCBI","NCBI RefSeq Genome Project","UoN Chair of Oman Medicinal Plant and Marine Natural Products, University of Oman"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/08/01; 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operational lifecycle is not asserted.","statusEvidenceDate":"2019-08-12","description":"RAD-seq data of 151 individuals of Pomacanthus maculosus collected through the Western Indian Ocean.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA559876"],"identifiers":[{"scheme":"BioProject","value":"PRJNA559876"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA559876","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna559876:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA559876","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna560069","name":"Schistosoma mansoni population exomics (Oman)","displayTitle":"Schistosoma mansoni population exomics (Oman)","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Texas Biomedical Research Institute"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/08/13; operational lifecycle is not asserted.","statusEvidenceDate":"2019-08-13","description":"In this project, we sequenced exomes from schistosomes (individual adults and cercariae) obtained from patient stools from Oman in order to have a comprehensive view of the natural variation in coding regions of the parasite genome.We specifically analyzed variation in the SmSULT-OR gene , the gene involved in oxamniquine resistance. An exome-wide analysis using these samples is on going.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA560069"],"identifiers":[{"scheme":"BioProject","value":"PRJNA560069"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA560069","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna560069:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA560069","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna560313","name":"Samail Ophiolite groundwater sequencing","displayTitle":"Samail Ophiolite groundwater sequencing","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Colorado School of Mines"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/08/15; operational lifecycle is not asserted.","statusEvidenceDate":"2019-08-15","description":"This study investigated the microbiome of serpentinization-impacted fluids across a range of geologic and hydrologic regimes within the Samail ophiolite of Oman.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA560313"],"identifiers":[{"scheme":"BioProject","value":"PRJNA560313"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA560313","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna560313:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA560313","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna560611","name":"The Etiological Bases of Giftedness: Epidemiological study of cognitive ability in children in Saudi Arabia","displayTitle":"The Etiological Bases of Giftedness: Epidemiological study of cognitive ability in children in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["NICHD"],"partnerOrganizations":[],"startYear":null,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"The BioProject registration date is unavailable; operational lifecycle is not asserted.","statusEvidenceDate":null,"description":"Recent studies of genetic foundations of cognitive ability rely on large samples (hundreds of thousands) of individuals from relatively outbred populations of mostly European ancestry. Hypothesizing that the genetic foundation of cognitive ability depends on the broader population-specific genetic context, we performed a genome-wide association study and homozygosity mapping of cognitive ability estimates obtained through latent variable modeling in a sample of 354 children from the consanguineous population of Saudi Arabia. Approximately half of the sample demonstrated significantly elevated homozygosity levels indicative of inbreeding, and among those with elevated homozygosity, it was negatively associated with cognitive ability. Further homozygosity mapping identified a specific run, inclusive of the GRIA4 gene, that survived corrections for multiple testing for association with cognitive ability. The results suggest that in a consanguineous population... (for more see dbGaP study page.)","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA560611"],"identifiers":[{"scheme":"BioProject","value":"PRJNA560611"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA560611","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna560611:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA560611","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna560612","name":"The Etiological Bases of Giftedness: Epidemiological study of cognitive ability in children in Saudi Arabia","displayTitle":"The Etiological Bases of Giftedness: Epidemiological study of cognitive ability in children in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Yale"],"partnerOrganizations":[],"startYear":null,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"The BioProject registration date is unavailable; operational lifecycle is not asserted.","statusEvidenceDate":null,"description":"Recent studies of genetic foundations of cognitive ability rely on large samples (hundreds of thousands) of individuals from relatively outbred populations of mostly European ancestry. 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operational lifecycle is not asserted.","statusEvidenceDate":"2019-11-23","description":"Here we report the genome sequences of the first OXA-48-producing S. Kentucky isolate in Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA591296"],"identifiers":[{"scheme":"BioProject","value":"PRJNA591296"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA591296","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna591296:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA591296","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna596664","name":"Alteration in the Culex pipiens transcriptome reveals the implication of the mosquito immune system during Rift Valley fever phlebovirus infection","displayTitle":"Alteration in the Culex pipiens transcriptome reveals the implication of the mosquito immune system during Rift Valley fever phlebovirus infection","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Culex pipiens","leadOrganizations":["CNAG-CRG"],"partnerOrganizations":[],"startYear":2019,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2019/12/19; operational lifecycle is not asserted.","statusEvidenceDate":"2019-12-19","description":"Rift valley fever (RVF) is an emerging zoonotic disease and it is caused by Rift valley fever phlebovirus (RVFV). This virus is commonly transmitted in endemic areas between wild ruminants and mosquitoes, mainly by mosquitoes of Culex and Aedes genus. Starting from 2000, several outbreaks have been reported outside the African continent, in countries facing the Mediterranean Sea, such as Saudi Arabia. The available vaccines for ruminants present limited efficacy or residual pathogenic effects. Consequently, new strategies are urgently required to limit the expansion of this zoonotic virus. The main objective of this work is to investigate the molecular responses of Culex pipiens to RVFV focusing mainly on genes implicated in the classical innate immunity pathways, RNAi mechanism and apoptosis process in order to elucidate the implicated genes in viral infection. The immune altered genes here described could be potential targets to control RVFV infection in mosquitoes. Some of the genes related to the immune defense response were previously described in others mosquito-arbovirus models, as also in Drosophila and human. To our knowledge, this study elucidates for the first time the Cx. pipiens-RVFV interaction in terms of defense infection-response, which was largely under studied and provides information to develop new approaches to prevent and control the expansion of the virus in the future. Overall design: Examination of the virulent RVFV infection in Cx. pipiens mosquito interaction","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA596664"],"identifiers":[{"scheme":"BioProject","value":"PRJNA596664"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA596664","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna596664:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA596664","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna599369","name":"Molecular epidemiology of ESBL producing Escherichia coli in paediatric population in Qatar","displayTitle":"Molecular epidemiology of ESBL producing Escherichia coli in paediatric population in Qatar","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Escherichia coli","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/06/18; operational lifecycle is not asserted.","statusEvidenceDate":"2020-06-18","description":"WGS was performed on ESBL-producing Escherichia coli recovered from screening and clinical specimens from paediatric patients at Sidra Medicine using Illumina Miseq platform in 2018","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA599369"],"identifiers":[{"scheme":"BioProject","value":"PRJNA599369"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA599369","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna599369:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA599369","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna603451","name":"Simmondsia chinensis Genome sequencing and assembly","displayTitle":"Simmondsia chinensis Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Simmondsia chinensis","leadOrganizations":["King Abdulaziz University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/01/28; operational lifecycle is not asserted.","statusEvidenceDate":"2020-01-28","description":"The present study aims at investigating a number of sex-specific markers previously used in jojoba towards further usage in breeding programs of jojoba growing in Saudi Arabia. Two experiments were performed. The first was conducted in order to detect presence of some sex-specific markers or genes known in the literature. This experiment involved one male and one female DNA samples isolated from leaves of morphologically-distinguished -based on flower shape- male and female plants growing at King Abdulaziz Farm station at Hada El-Sham near Jeddah. DNAs were isolated following standard procedures and nucleic acid samples were shipped to BGI, China for deep sequencing. The second experiment was conducted in order to detect expression of some sex-specific markers or genes known in the literature.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA603451"],"identifiers":[{"scheme":"BioProject","value":"PRJNA603451"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA603451","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna603451:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA603451","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna603760","name":"Comparative metagenomic analysis of crude oil contaminated soil samples","displayTitle":"Comparative metagenomic analysis of crude oil contaminated soil samples","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["SULTAN QABOOS UNIVERSITY"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/01/29; operational lifecycle is not asserted.","statusEvidenceDate":"2020-01-29","description":"Crude oil is a difficult environment to thrive, due to high toxicity and hydrophobicity, still microbial communities in oil-polluted desert soils were able to persist in such conditions. In order to find microbes that could be utilized for bioremediation or biotransformation objectives, diversity analyses from soil samples randomly collected from four oil sludge pits of a heavy oil field in Sultanate of Oman were conducted.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA603760"],"identifiers":[{"scheme":"BioProject","value":"PRJNA603760"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA603760","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna603760:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA603760","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna606937","name":"Litoribacterium kuwaitense strain:SIJ1 Genome sequencing and assembly","displayTitle":"Litoribacterium kuwaitense strain:SIJ1 Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Litoribacterium kuwaitense","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/03/02; operational lifecycle is not asserted.","statusEvidenceDate":"2020-03-02","description":"Describing novel genus of the family Bacillaceae","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA606937"],"identifiers":[{"scheme":"BioProject","value":"PRJNA606937"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA606937","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna606937:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA606937","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna607756","name":"Grimontia sedimenti strain:S25 Genome sequencing and assembly","displayTitle":"Grimontia sedimenti strain:S25 Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Grimontia sedimenti","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/03/01; operational lifecycle is not asserted.","statusEvidenceDate":"2020-03-01","description":"The study describe a novel species of Grimontia isolated from marine sediment near coral reefs in the Arabian Gulf","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA607756"],"identifiers":[{"scheme":"BioProject","value":"PRJNA607756"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA607756","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna607756:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA607756","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna609106","name":"Skin microbiome Raw sequence reads","displayTitle":"Skin microbiome Raw sequence reads","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdulaziz University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/02/27; operational lifecycle is not asserted.","statusEvidenceDate":"2020-02-27","description":"The aim of this study is the identification of normal (healthy) skin microbiome signatures in individuals living in Saudi Arabia through the analysis of 16S rRNA of the resident skin microbiome in inner elbow. Eight healthy volunteers from Saudi Arabia (4 male &amp; 4 female), aged 20 to 37 years, were enrolled in the current study. The skin samples were collected by swabbing from areas of the antecubital fossa (inner elbow) of the right arm for each subject with no prior cleaning or treatment of skin surface. Swabbing has previously been shown to be as effective as other skin sampling methods for surveying bacterial diversity (Grice et al., 2008). Swabs were obtained using a single-use sterilized cotton-tipped pledget, soaked in 0.15 M NaCl with 0.1% Tween 20 (Fisher Scientific). PCR amplification of the V3-V4 regions of bacterial 16S rRNA was performed and amplicons were, then, shipped to Beijing Genome Institute (BGI) in China for library construction and deep sequencing on Illumina Miseq platform to recover ~300 bp pair-end reads of the V3 and V4 regions.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA609106"],"identifiers":[{"scheme":"BioProject","value":"PRJNA609106"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA609106","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna609106:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA609106","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna609881","name":"Identification of MCR-8 in clinical isolates from Qatar and evaluation of their antimicrobial profiles","displayTitle":"Identification of MCR-8 in clinical isolates from Qatar and evaluation of their antimicrobial profiles","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Enterobacteriaceae bacterium","leadOrganizations":["University of Antwerpen"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/03/03; operational lifecycle is not asserted.","statusEvidenceDate":"2020-03-03","description":"This study aimed to elucidate molecular mechanisms behind the phenotypic colistin resistance seen in 18 bacterial isolates collected from patients at the Hamad General Hospital (Qatar). We believe that this is the first description of MCR-8 in human isolates from Qatar, where previously it has only been observed in animals.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA609881"],"identifiers":[{"scheme":"BioProject","value":"PRJNA609881"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA609881","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna609881:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA609881","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna611941","name":"Effect of superhydrophobic sand mulches on bacterial communities associated with crops","displayTitle":"Effect of superhydrophobic sand mulches on bacterial communities associated with crops","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/03/11; operational lifecycle is not asserted.","statusEvidenceDate":"2020-03-11","description":"The effects of superhydrophobic sand mulches layer on crop yields were evaluated in field trials (Hada Al-Sham, Saudi Arabia, 21.7963 N, 39.7265 E) using tomato and wheat as model plants. For each field treatment (irrigation: fresh/salty water; overlay: superhydrophobic sand mulches presence/absence), the root system of barley and tomato plants was randomly selected from each experimental plot (barley, n=18; tomato, n=18). The root system was sampled using sterile scissors and tweezers and the rhizosphere portion of soil further separated. Bulk soil not influenced by the root system was also sampled. Microbiological analyses were performed on the total DNA extracted from root tissues, rhizosphere, and bulk soil. High-throughput sequencing of the 16S rRNA gene was used to investigate the bacterial community associated with such samples.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA611941"],"identifiers":[{"scheme":"BioProject","value":"PRJNA611941"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA611941","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna611941:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA611941","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna613076","name":"Population genomic analyses of the sea urchin, Echinometra sp. EZ, across an extreme environmental gradient","displayTitle":"Population genomic analyses of the sea urchin, Echinometra sp. EZ, across an extreme environmental gradient","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["University of North Carolina at Charlotte"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/03/17; operational lifecycle is not asserted.","statusEvidenceDate":"2020-03-17","description":"The study of genetic diversity and population structure in marine organisms is fundamental to our understanding of how species have evolved and diversified. Extreme environmental gradients represent excellent study systems to better understand the variables that mediate patterns of genomic variation between populations, and allow for more accurate predictions of how environmental change might affect marine species. The Persian/Arabian Gulf is extreme in both temperature and salinity while the adjacent Gulf of Oman has conditions more typical of tropical oceans. The sea urchin Echinometra sp. EZ inhabits both of these seas and plays a critical role in coral reef health as a grazer and bioeroder, but, to date, there have been no population genomic studies on urchins in this unique region. More broadly, there have been no regional studies investigating marine invertebrate species with similar life histories, such as long-lived, planktotrophic larvae, large population sizes, and large reproductive clutches. These traits, in theory, should homogenize populations, unless non-neutral processes are occurring. To this end, we generated a draft genome and a restriction-site associated DNA sequencing dataset from seven populations along an environmental gradient across the Persian/Arabian Gulf and the Gulf of Oman. Population structure analyses revealed a high degree of admixture between all sites, although there was population differentiation and significant pairwise FST values between the two seas. Preliminary results suggest migration is bidirectional between the seas and nine candidate loci were identified as being under putative natural selection, including one collagen gene. This study is the first to investigate the population genomics of a sea urchin from this extreme environmental gradient and is an important contribution to our understanding of the complex spatial patterns that drive genomic divergence.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA613076"],"identifiers":[{"scheme":"BioProject","value":"PRJNA613076"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA613076","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna613076:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA613076","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna613915","name":"Natural soil habitats in the State of Qatar: Investigating the prevalent soil microbiome and edaphic characteristics.","displayTitle":"Natural soil habitats in the State of Qatar: Investigating the prevalent soil microbiome and edaphic characteristics.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Weill Cornell Medicine-Qatar"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/03/22; operational lifecycle is not asserted.","statusEvidenceDate":"2020-03-22","description":"This study identifies the different microbiota associated with different landforms/soil types present in the State of Qatar and further examines the ecological and chemical nature of the habitats inhabited by these microbes and their inter-relationship.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA613915"],"identifiers":[{"scheme":"BioProject","value":"PRJNA613915"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA613915","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna613915:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA613915","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna617109","name":"Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVII_2 metagenome","displayTitle":"Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVII_2 metagenome","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"tidal flat metagenome","leadOrganizations":["DOE Joint Genome Institute"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/03/31; operational lifecycle is not asserted.","statusEvidenceDate":"2020-03-31","description":"Tidal flats microbial mat communities from the lagoon near Shannah, Oman; from a mat lacking salt crust cover","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA617109"],"identifiers":[{"scheme":"BioProject","value":"PRJNA617109"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA617109","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna617109:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA617109","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna624912","name":"Whole-genome sequencing of Carbapenemase-producing Enterobacteriaceae isolated from high dependency unit patients. A Study from a secondary and tertiary hospital","displayTitle":"Whole-genome sequencing of Carbapenemase-producing Enterobacteriaceae isolated from high dependency unit patients. A Study from a secondary and tertiary hospital","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/04/12; operational lifecycle is not asserted.","statusEvidenceDate":"2020-04-12","description":"we investigated the modes of CRE spreading in ICU units in Kuwait, to explain whether this emergence is due to horizontal gene transfer or clonal spread. We studied the genetic background of carbapenemase genes, virulence factors, and mobile genetic elements, the plasmids carrying them, and the molecular features of a commonly encountered carbapenem-resistant clone of selected strains by whole genome sequencing (WGS). It is the first whole-genome sequenced Enterobacteriaceae to shed light on the complexity of carbapenemases and plasmids in Kuwait.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA624912"],"identifiers":[{"scheme":"BioProject","value":"PRJNA624912"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA624912","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna624912:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA624912","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna627583","name":"Genome sequencing and assembly of carbapenam resistant Enterobacteriaceae","displayTitle":"Genome sequencing and assembly of carbapenam resistant Enterobacteriaceae","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Escherichia coli","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/04/23; operational lifecycle is not asserted.","statusEvidenceDate":"2020-04-23","description":"The project aims to characterize the genotypes and resistance genes of carbapenam-resistant Enterobacteriaceae from the paediatric population in Qatar","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA627583"],"identifiers":[{"scheme":"BioProject","value":"PRJNA627583"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA627583","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna627583:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA627583","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna628513","name":"Intestinal microbiome profiling of influenza infected patients","displayTitle":"Intestinal microbiome profiling of influenza infected patients","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/04/26; operational lifecycle is not asserted.","statusEvidenceDate":"2020-04-26","description":"Profiling of Gut Microbiome in Hospitalized Patients according to Influenza Type and Subtype","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA628513"],"identifiers":[{"scheme":"BioProject","value":"PRJNA628513"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA628513","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna628513:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA628513","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna629281","name":"Homo sapiens Variation","displayTitle":"Homo sapiens Variation","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Anti-Doping Lab Qatar"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/04/29; operational lifecycle is not asserted.","statusEvidenceDate":"2020-04-29","description":"GWAS Elite Athlete","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Variation","Sequencing","Genome"],"accessionIds":["PRJNA629281"],"identifiers":[{"scheme":"BioProject","value":"PRJNA629281"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA629281","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna629281:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA629281","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna630112","name":"Escherichia coli Genome sequencing and assembly from Kuwait","displayTitle":"Escherichia coli Genome sequencing and assembly from Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Escherichia coli","leadOrganizations":["Kuwait university"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/05/04; operational lifecycle is not asserted.","statusEvidenceDate":"2020-05-04","description":"Escherichia coli Genome sequencing and assembly from Carbapenem resistance Enterobacteriaceae isolates from community and hospitalized patients in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA630112"],"identifiers":[{"scheme":"BioProject","value":"PRJNA630112"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA630112","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna630112:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA630112","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna632581","name":"Klebsiella pneumoniae Genome sequencing and assembly","displayTitle":"Klebsiella pneumoniae Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Klebsiella pneumoniae","leadOrganizations":["Kuwait university"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/05/13; operational lifecycle is not asserted.","statusEvidenceDate":"2020-05-13","description":"Carbapenem resistance Klebsiella pneumoniae obtained from healthy individuals in community and hospitalized patients in Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA632581"],"identifiers":[{"scheme":"BioProject","value":"PRJNA632581"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA632581","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna632581:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA632581","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna633289","name":"18S rRNA gene sequencing of microalgae and other microorganisms in Kuwait bay","displayTitle":"18S rRNA gene sequencing of microalgae and other microorganisms in Kuwait bay","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/05/16; operational lifecycle is not asserted.","statusEvidenceDate":"2020-05-16","description":"The goal of the project was to isolate indigenous microalgae for the production of animal feed and high-value co-products. One of the main objectives of this study is to identify microalgae and other marine microbes from various sampling stations of Kuwait bay in order to develop a baseline information source. Next-generation sequencing-based approach was used to sequence 18S rRNA gene and study the changes in the population of various taxa across different sampling stations during two seasons (summer and winter). The sampling stations were carefully chosen to represent algal populations in polluted and unpolluted zones of Kuwait bay. Stations KA and KB are located in the north of Kuwait in a region that receives runoff from the Shatt Al-Arab river. Both these stations have moderate levels of human activity. In these sites, the salinity is comparatively low during spring and early summer. Station KC and K6 are located in the Kuwait bay, which is more prone to anthropogenic activities and receives a large amount of municipal waste from Kuwait city, effluents from various industrial units, power and desalination plants, and vessels entering Kuwait port. Stations K3 and K18 have relatively clean water and are located in the open Gulf. Station K18 is the farthest from the shore, and the least impacted station by the human activities among all stations. All stations are shallow, with the water depth ranging from 5 m at station B to 29 m at station K18. The seawater temperature ranged from 17.5 to 30-degree Celsius and the average salinity varied between 38 to 44 parts per thousand (ppt) during the winter to the summer season.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA633289"],"identifiers":[{"scheme":"BioProject","value":"PRJNA633289"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA633289","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna633289:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA633289","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna634701","name":"Multi-season Hypersaline Microbial Mat","displayTitle":"Multi-season Hypersaline Microbial Mat","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Toronto at Scarborough"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/05/24; operational lifecycle is not asserted.","statusEvidenceDate":"2020-05-24","description":"data from 2 sampling seasons of a hypersaline microbial mat located in Qatar","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA634701"],"identifiers":[{"scheme":"BioProject","value":"PRJNA634701"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA634701","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna634701:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA634701","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna636004","name":"Isolation and characterization of severe acute respiratory syndrome coronavirus 2 in Turkey","displayTitle":"Isolation and characterization of severe acute respiratory syndrome coronavirus 2 in Turkey","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Istanbul Technical University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/05/30; operational lifecycle is not asserted.","statusEvidenceDate":"2020-05-30","description":"Coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) associated with severe respiratory illness emerged in Wuhan, China, in late 2019. The virus has able to spread promptly to across all continents in the world. The current pandemic has posed a great threat to public health concern and safety. Currently, there are no specific treatments or licensed vaccines available for COVID-19. We isolated the SARS-CoV-2 from the nasopharyngeal sample of a patient with confirmed COVID-19 in Turkey. We determined that Vero E6 and MA-104 cell lines are suitable for SARS-CoV-2 that supports viral replication, development of CPE and subsequent cell death. Phylogenetic analyses of whole genome sequences showed that hCoV-19/Turkey/ERAGEM-001/2020 strain clustered with the strains mainly from Australia, Canada, England, Iran and Kuwait and the cases in the nearby clusters were reported to have travel history to Iran and share the common unique nucleotide substitutions","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA636004"],"identifiers":[{"scheme":"BioProject","value":"PRJNA636004"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA636004","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna636004:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA636004","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna639313","name":"Blockade of PD-1, PD-L1, and TIM-3 Altered Distinct Immune- and Cancer-Related Signaling Pathways in the Transcriptome of Human Breast Cancer Explants","displayTitle":"Blockade of PD-1, PD-L1, and TIM-3 Altered Distinct Immune- and Cancer-Related Signaling Pathways in the Transcriptome of Human Breast Cancer Explants","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Qatar Biomedical Research Institute"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/06/14; operational lifecycle is not asserted.","statusEvidenceDate":"2020-06-14","description":"Immune checkpoint inhibitors (ICIs) is yet to have a major advantage over conventional therapies, as only a fraction of patients benefit from the currently approved ICIs and the response rates remain low. We investigated the effects of different ICIs, anti-PD-1, anti-PD-L1 and anti-TIM-3, on human primary breast cancer explant cultures using RNA-Seq.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA639313"],"identifiers":[{"scheme":"BioProject","value":"PRJNA639313"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA639313","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna639313:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA639313","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna639864","name":"Deep-sequencing analysis of SARS-CoV-2 viruses","displayTitle":"Deep-sequencing analysis of SARS-CoV-2 viruses","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/06/16; operational lifecycle is not asserted.","statusEvidenceDate":"2020-06-16","description":"In-depth analysis of SARS-CoV-2 viruses from patients with variable severities","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA639864"],"identifiers":[{"scheme":"BioProject","value":"PRJNA639864"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA639864","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna639864:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA639864","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna641527","name":"Transcriptomic analyses of myeloid-derived suppressor cell subsets in the circulation of colorectal cancer patients","displayTitle":"Transcriptomic analyses of myeloid-derived suppressor cell subsets in the circulation of colorectal cancer patients","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Qatar Biomedical Research Institute"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/06/24; operational lifecycle is not asserted.","statusEvidenceDate":"2020-06-24","description":"Myeloid subsets from the circulation of colorectal cancer patients","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA641527"],"identifiers":[{"scheme":"BioProject","value":"PRJNA641527"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA641527","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna641527:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA641527","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna643969","name":"Oral microbiome of Hypertension subjects from Qatar Biobank","displayTitle":"Oral microbiome of Hypertension subjects from Qatar Biobank","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/07/03; operational lifecycle is not asserted.","statusEvidenceDate":"2020-07-03","description":"Compare and associate oral microbiome of hypertension subjects and healthy controls enrolled at Qatar Biobank. Many of the hypertension subjects were also overweight/obese and diabetic/hyperglycemic. Microbiome diversity and phylogenetic analysis was performed to asses role of microbiome changes on disease severity and pathogenesis. Ninety six oral samples were subjected to DNA extraction and paired -end Illumina MiSeq sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA643969"],"identifiers":[{"scheme":"BioProject","value":"PRJNA643969"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA643969","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna643969:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA643969","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna644941","name":"Phenotypic and genotypic typing of Burkholderia cepacia complex isolated from non-cystic fibrosis patients in  Kuwait.","displayTitle":"Phenotypic and genotypic typing of Burkholderia cepacia complex isolated from non-cystic fibrosis patients in  Kuwait.","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/07/08; operational lifecycle is not asserted.","statusEvidenceDate":"2020-07-08","description":"The focus on BCC species in this study is driven by their pathological significance and lack of well defined characterization in Kuwait. 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operational lifecycle is not asserted.","statusEvidenceDate":"2020-09-09","description":"Microbiome of chronic kidney diseases rats","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA662560"],"identifiers":[{"scheme":"BioProject","value":"PRJNA662560"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA662560","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna662560:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA662560","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna663404","name":"Immunomodulatory effects of vitamin D supplementation in a deficient population","displayTitle":"Immunomodulatory effects of vitamin D supplementation in a deficient population","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["In collaboration with Department of Biomedical Sciences, College of Health Sciences, Qatar University, Research Department- Microbiome and Host-Microbe Interaction Lab, Sidra Medicine and Qatar University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/09/14; operational lifecycle is not asserted.","statusEvidenceDate":"2020-09-14","description":"Background: In addition to its canonical functions, vitamin D has been proposed to be an important mediator of the immune system. Despite ample sunshine, vitamin D deficiency is prevalent (> 80%) in the Middle East, resulting in a high rate of supplementation. However, the underlying molecular mechanisms of the specific regimen and potential factors affecting an individual’s response to vitamin D are not well characterized. Objective: To characterize changes in blood transcriptomic and the potential mechanisms associated with vitamin D3 supplementation and response. Design: In this intervention study, one hundred vitamin D-deficient women were given a weekly oral dose (50,000 IU) of vitamin D3 for three months. A high-throughput targeted PCR, composed of 264 genes representing important blood transcriptomic fingerprints in health and disease states, was performed on pre- and post-supplementation blood samples to profile the molecular response to vitamin D3. Multivariate, network, gene ontology, and literature mining analyses were used for the interpretation of the transcriptomic profiling results. Results: We identified 54 differentially expressed genes that were strongly modulated by vitamin D3 supplementation. Network analyses showed significant changes in the immune-related pathways such as TLR4/CD14 and IFN receptors, and catabolic processes related to NFkB, which were subsequently confirmed by gene ontology enrichment analyses. We proposed a model for vitamin D3 response, using the reduced expression of the molecules involved and the receptor-mediated intra-cellular signaling leading to reduce cytokine production. Conclusions: Blood-transcriptomic profiles of vitamin D3 response were generated using a targeted blood gene panel. Vitamin D has a strong effect on the immune system, G-coupled protein receptor signaling, and the ubiquitin system. We highlighted the major molecular changes and biological processes induced by vitamin D3, which will help to further investigate the effectiveness of vitamin D supplementation among individuals in the Middle East. Overall design: In this intervention study, one hundred vitamin D-deficient women were given a weekly oral dose (50,000 IU) of vitamin D3 for three months. A high-throughput targeted PCR, composed of 264 genes representing important blood transcriptomic fingerprints in health and disease states, was performed on pre- and post-supplementation blood samples to profile the molecular response to vitamin D3. Multivariate, network, gene ontology, and literature mining analyses were used for the interpretation of the transcriptomic profiling results.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Other","Transcriptome"],"accessionIds":["PRJNA663404"],"identifiers":[{"scheme":"BioProject","value":"PRJNA663404"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA663404","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna663404:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA663404","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna664006","name":"RNA-Seq analysis of colorectal tumor-infiltrating myeloid-derived suppressor cell subsets revealed gene signatures of poor prognosis","displayTitle":"RNA-Seq analysis of colorectal tumor-infiltrating myeloid-derived suppressor cell subsets revealed gene signatures of poor prognosis","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Qatar Biomedical Research Institute"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/09/17; operational lifecycle is not asserted.","statusEvidenceDate":"2020-09-17","description":"Myeloid subsets from colorectal cancer tissues","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA664006"],"identifiers":[{"scheme":"BioProject","value":"PRJNA664006"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA664006","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna664006:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA664006","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna665121","name":"WGS of XDR Salmonella enterica subsp. enterica serovar Typhi","displayTitle":"WGS of XDR Salmonella enterica subsp. enterica serovar Typhi","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Central Public Health Laboratories","Central Public Health Laboratories Oman"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/09/23; operational lifecycle is not asserted.","statusEvidenceDate":"2020-09-23","description":"Whole genome sequencing of XDR Salmonella Typhi from Oman","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA665121"],"identifiers":[{"scheme":"BioProject","value":"PRJNA665121"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA665121","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna665121:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA665121","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna667192","name":"Molecular Characterization of Carbapenemase-producing Enterobacteriaceaein the Pediatric Population in Qatar Raw sequence reads","displayTitle":"Molecular Characterization of Carbapenemase-producing Enterobacteriaceaein the Pediatric Population in Qatar Raw sequence reads","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/10/04; operational lifecycle is not asserted.","statusEvidenceDate":"2020-10-04","description":"This study aims to characterize genes encoding carbapenemases in enterobacterial species resistant to these agents recovered from clinical and screening specimens from pediatric patients at Sidra Medicine in Qatar.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA667192"],"identifiers":[{"scheme":"BioProject","value":"PRJNA667192"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667192","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna667192:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667192","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna667587","name":"Honeybee Conservation Project (Saudi Arabia)","displayTitle":"Honeybee Conservation Project (Saudi Arabia)","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["King Saud University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/10/06; operational lifecycle is not asserted.","statusEvidenceDate":"2020-10-06","description":"Complete genome sequencing project of the native honeybee of Saudi Arabia (Apis mellifera jemenitica). The project aims first to explore molecular-based variation among honeybee populations and ecotypes within Saudi Arabia, and to find other evolutionary relationships with other honeybee subspecies.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA667587"],"identifiers":[{"scheme":"BioProject","value":"PRJNA667587"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667587","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna667587:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667587","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna669035","name":"Assessment of Genetic Diversity of Rhanterium eppaposum","displayTitle":"Assessment of Genetic Diversity of Rhanterium eppaposum","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/10/13; operational lifecycle is not asserted.","statusEvidenceDate":"2020-10-13","description":"Rhanterium eppaposum Oliv. (Arfaj) the national plant of Kuwait, is a perennial bushy shrub and the national flower of Kuwait. It is one of the most palatable forage plants and an excellent performer for desert rehabilitation. Due to several anthropogenic activities and climate change, this native plant has suffered severe degradation. In order to formulate conservation strategies the genetic diversity of Rhanterium, was assessed by Genotyping by Sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA669035"],"identifiers":[{"scheme":"BioProject","value":"PRJNA669035"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA669035","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna669035:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA669035","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna669200","name":"Assessment of Genetic Diversity of Haloxylon salicornium","displayTitle":"Assessment of Genetic Diversity of Haloxylon salicornium","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/10/14; operational lifecycle is not asserted.","statusEvidenceDate":"2020-10-14","description":"Haloxylon salicornium locally known as Rimth is a forage plant and an excellent performer for desert rehabilitation in Kuwait. Due to several anthropogenic activities and climate change, this native plant has suffered severe degradation. In order to formulate conservation strategies the genetic diversity of Haloxylon, was assessed by Genotyping by Sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA669200"],"identifiers":[{"scheme":"BioProject","value":"PRJNA669200"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA669200","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna669200:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA669200","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna674848","name":"Metagenomic Analysis of Marine Benthic Protozoans and Micrometazoans at The Red Seacoast of Jeddah Province, Saudi Arabia Metagenomic assembly","displayTitle":"Metagenomic Analysis of Marine Benthic Protozoans and Micrometazoans at The Red Seacoast of Jeddah Province, Saudi Arabia Metagenomic assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Jeddah"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/11/05; operational lifecycle is not asserted.","statusEvidenceDate":"2020-11-05","description":"Annelida, Bacillariophyta, Chlorophyta, Mollusca, Platyhelminthes, Porifera, Rhodophyta, Streptophyta, and Xenacoelomorpha were the most predominant phyla in all samples collected.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenomic assembly","Sequencing","Genome"],"accessionIds":["PRJNA674848"],"identifiers":[{"scheme":"BioProject","value":"PRJNA674848"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA674848","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna674848:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA674848","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna675116","name":"Falco rusticolus isolate:bFalRus1 RefSeq Genome sequencing and assembly","displayTitle":"Falco rusticolus isolate:bFalRus1 RefSeq Genome sequencing and assembly","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Falco rusticolus","leadOrganizations":["NCBI","Vertebrate Genomes Project","G10K","Monash University Malaysia Genomics Facility","Qasim Ayub","Qatar Falcon Genome Project, Al-Gannas Qatari Society","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/11/02; operational lifecycle is not asserted.","statusEvidenceDate":"2020-11-02","description":"The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA561988). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["RefSeq Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA675116"],"identifiers":[{"scheme":"BioProject","value":"PRJNA675116"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA675116","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna675116:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA675116","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna675322","name":"Arbuscular Mycorrhizae Fungal Sequence Reads","displayTitle":"Arbuscular Mycorrhizae Fungal Sequence Reads","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/11/08; operational lifecycle is not asserted.","statusEvidenceDate":"2020-11-08","description":"Our study focuses on identifying the diversity of arbuscular mycorrhizal fungi in Qatar and their chemical drivers. We used Illumina MiSeq sequencing platform to identify virtual taxa (VTs) of AM fungi, and explored their diversity and richness in relation to soil chemical characteristics from 19 locations across Qatar. Our data fill a gap of broad scale studies from the Arabian Peninsula, and thus contribute to better understanding of global patterns of AM fungi and their drivers.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA675322"],"identifiers":[{"scheme":"BioProject","value":"PRJNA675322"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA675322","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna675322:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA675322","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna677340","name":"Tidal flats microbial mat communities from the lagoon near Shannah, Oman; from a mat covered with 2 cm thick salt crust","displayTitle":"Tidal flats microbial mat communities from the lagoon near Shannah, Oman; from a mat covered with 2 cm thick salt crust","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"tidal flat metagenome","leadOrganizations":["DOE Joint Genome Institute"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/11/12; operational lifecycle is not asserted.","statusEvidenceDate":"2020-11-12","description":"Tidal flats microbial mat communities from the lagoon near Shannah, Oman; from a mat covered with 2 cm thick salt crust","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA677340","PRJNA677341"],"identifiers":[{"scheme":"BioProject","value":"PRJNA677340"},{"scheme":"BioProject","value":"PRJNA677341"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA677340","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna677340:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA677340","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna677340:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA677341","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna680757","name":"Regulation of circular RNA circNFATc3 in cancer cells alters proliferation, migration and oxidative phosphorylation","displayTitle":"Regulation of circular RNA circNFATc3 in cancer cells alters proliferation, migration and oxidative phosphorylation","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["weill cornell medicine- qatar"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/11/25; operational lifecycle is not asserted.","statusEvidenceDate":"2020-11-25","description":"Regulation of circular RNA circNFATc3 in cancer cells alters proliferation, migration, and oxidative phosphorylation.NFATC3 gene (which is formed from back splicing of exon 2 and 3) in solid tumors was identified from transcriptomic data. Here we show that circNFATC3 loss of function experiments using RNAi mediated circRNA silencing and differential expression using RNAseq for identifying molecular phenotypes. We used MDA-MB-231 cells for RNA sequencing, two different siRNA constructs were used for RNA seq along with the scrambled control. RNA seq was performed Illumina platform, the data analysis was done wit PARTEK genomic suite.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA680757"],"identifiers":[{"scheme":"BioProject","value":"PRJNA680757"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA680757","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna680757:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA680757","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna681420","name":"Platygyra daedalea Raw sequence reads","displayTitle":"Platygyra daedalea Raw sequence reads","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Platygyra daedalea","leadOrganizations":["University of Wollongong"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/11/29; operational lifecycle is not asserted.","statusEvidenceDate":"2020-11-29","description":"Platygyra daedalea samples from parental colonies and larval crosses from Abu Dhabi (Persian/Arabian Gulf) and Fujairah (Oman Sea)","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA681420"],"identifiers":[{"scheme":"BioProject","value":"PRJNA681420"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA681420","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna681420:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA681420","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna682302","name":"Casein gene cluster variability in dromedary camel population of United Arab Emirates","displayTitle":"Casein gene cluster variability in dromedary camel population of United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["University of Sharjah"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/12/03; operational lifecycle is not asserted.","statusEvidenceDate":"2020-12-03","description":"Genetic polymorphisms causing variation in casein genes (CSN1S1, CSN1S2, CSN2 and CSN3) gene have been extensively studied in goat and cows, however, such studies are very limited in camels so far. We aimed to identify various CSN alleles that could be associated with different level of expression in the United Arab Emirates (UAE) dromedary population. We sequenced the whole gene each in casein gene cluster by Next Generation Sequencing identified and characterized novel gene variants in 93 she-camels. Most of the variants were found in non -coding intron and upstream sequences and there were only very few variants with functional consequences. More investigations are required to find the functional impact of these variants on the milk quantity and quality.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA682302"],"identifiers":[{"scheme":"BioProject","value":"PRJNA682302"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA682302","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna682302:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA682302","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna685111","name":"Antibody repertoires in a general adult Arab population (Part I : sample 1 to 10)","displayTitle":"Antibody repertoires in a general adult Arab population (Part I : sample 1 to 10)","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/12/14; operational lifecycle is not asserted.","statusEvidenceDate":"2020-12-14","description":"We provide raw sequence read data from Phage-Immunoprecipitation Sequencing (PhIP-Seq) experiments using serum samples obtained from 798 Qatari nationals or long-term residents who had previously participated in the Qatar Genome Programme (QGP). This submission has 10 samples (i.e. sample Id 1 to 10). With one technical repeat for each sample, total number of entries in this submission is 20 (= 10x2). The rest 788 samples (Sample ID 11 to 798) can be found with SRA submission ID PRJNA688708.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA685111"],"identifiers":[{"scheme":"BioProject","value":"PRJNA685111"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA685111","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna685111:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA685111","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna686157","name":"Pachyseris speciosa isolate:Pachyseris speciosa s.l. Genome sequencing and assembly","displayTitle":"Pachyseris speciosa isolate:Pachyseris speciosa s.l. Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Reef Future Genomics (ReFuGe 2020) Consortium","Australian National University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/01/05; operational lifecycle is not asserted.","statusEvidenceDate":"2021-01-05","description":"This genome assembly is part of the Sea-quence Project. (https://data.bioplatforms.com/organization/about/bpa-great-barrier-reef)The Sea-quence Project is generating core genetic data for corals from the Great Barrier Reef and Red Sea to ultimately help guide reef management practices. The project aims to sequence the genomes of 9 coral species across 6 different coral types, 3-4 algal symbionts and generate a new suite of microbial symbiont sequence data. This project is an initiative of the Reef Future Genomics (ReFuGe 2020) Consortium. Membership of the consortium includes:Great Barrier Reef FoundationJames Cook UniversityAustralian Institute of Marine ScienceUniversity of QueenslandThe Great Barrier Reef Marine Park AuthorityKing Abdullah University of Science and Technology (Saudi Arabia)Australian National UniversityBioplatforms AustraliaFor more information, please visit: http://www.bioplatforms.com/great-barrier-reef/For access to the assembled genomes, please go to http://refuge2020.reefgenomics.org/","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA686157"],"identifiers":[{"scheme":"BioProject","value":"PRJNA686157"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA686157","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna686157:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA686157","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna687136","name":"Genomic epidemiology of SARS-CoV-2 in the United Arab Emirates reveals novel insights into the country-specific variation, co-infection and host-dependent RNA editing.","displayTitle":"Genomic epidemiology of SARS-CoV-2 in the United Arab Emirates reveals novel insights into the country-specific variation, co-infection and host-dependent RNA editing.","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["G42 Healthcare"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/12/22; operational lifecycle is not asserted.","statusEvidenceDate":"2020-12-22","description":"The United Arab Emirates is a major business hub with substantial amount of international travel. Like many other countries, it was greatly affected by the COVID-19pandemic since late January 2020, with recurring waves of infection. This study aimed at combining genomic and epidemiological data to unravel the source of SARS-CoV-2introduction, transmission and evolution in the country.We performed meta-transcriptomic sequencing of 1,067 nasopharyngeal swab samples collected from qRT-PCR positive COVID-19 patients in Abu Dhabi, UAE, between May 9th and June 29th 2020. We investigated the genetic diversity and transmission dynamics of the viral population and analyzed the infection and transmission potential of novel genomic clusters. Within-host SARS-CoV-2 genetic variation was analyzed to determine the occurrence and prevalence of multiple infections. Finally, we evaluated innate host responses during the prolonged period of local infection. All globally known SARS-CoV-2 clades were identified within the UAE sequenced strains, with a higher occurrence of European and East Asian clades.We defined 5 subclades based on 11 unique genetic variants within the UAE strains, which were associated with higher viral loads (p<0.001). Multiple infection of different SARS-CoV-2 strains was observed for at least 5% of the patients. We also observed a host-defense mechanism via RNA editing mediated by APOBEC3 rather than ADAR in nasopharyngeal samples. The SARS-CoV-2 epidemic in the UAE was founded by international importation followed by local transmission, leading to prevalent multiple infection and large subclade descendances. While RNA editing mechanisms mutate the viral population, newly arisen genetic variation can contribute to a heavier viral burden. Meta-transcriptomic sequencing can help to determine the transmission patterns of SARS-CoV-2.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA687136"],"identifiers":[{"scheme":"BioProject","value":"PRJNA687136"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA687136","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna687136:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA687136","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna688708","name":"Antibody repertoires in a general adult Arab population (Part II : sample 11 to 798)","displayTitle":"Antibody repertoires in a general adult Arab population (Part II : sample 11 to 798)","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2020,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2020/12/30; operational lifecycle is not asserted.","statusEvidenceDate":"2020-12-30","description":"We provide raw sequence read data from Phage-Immunoprecipitation Sequencing (PhIP-Seq) experiments using serum samples obtained from 798 Qatari nationals or long-term residents who had previously participated in the Qatar Genome Programme (QGP). This submission has 788 samples, i.e. sample Id 11 to 798. Each sample has been submitted with a technical repeat. Therefore, total number of entries in this submission is 1576 (=788*2). The first 10 samples (i.e. Sample ID 1 to 10) can be found with SRA submission ID PRJNA685111.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA688708"],"identifiers":[{"scheme":"BioProject","value":"PRJNA688708"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA688708","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna688708:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA688708","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna689664","name":"Antibody repertoires in selected pediatric cohort","displayTitle":"Antibody repertoires in selected pediatric cohort","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/01/05; operational lifecycle is not asserted.","statusEvidenceDate":"2021-01-05","description":"We provide raw sequence read data from Phage-Immunoprecipitation Sequencing (PhIP-Seq) experiments using serum samples obtained from 232 children.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA689664"],"identifiers":[{"scheme":"BioProject","value":"PRJNA689664"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA689664","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna689664:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA689664","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna689941","name":"RAD sequencing Pocillopora","displayTitle":"RAD sequencing Pocillopora","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Not stated","leadOrganizations":["Aix-Marseille Universite"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/01/06; operational lifecycle is not asserted.","statusEvidenceDate":"2021-01-06","description":"RAD sequencing analysis of Pocillopora samples in Oman and French Polynesia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA689941"],"identifiers":[{"scheme":"BioProject","value":"PRJNA689941"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA689941","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna689941:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA689941","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna690895","name":"Whole Genome Sequencing of Carbapenem Resistant Enterobacteriaceae","displayTitle":"Whole Genome Sequencing of Carbapenem Resistant Enterobacteriaceae","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Enterobacter","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/01/24; operational lifecycle is not asserted.","statusEvidenceDate":"2021-01-24","description":"This study provides insight in to the molecular mechanisms behind the phenotypic carbapenem resistance seen in 32 bacterial isolates collected from patients with lower urinary tract infection at the Hamad General Hospital (Qatar). We believe that this is the first description of carbapenem resistance genes among pediatric population from Qatar.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA690895"],"identifiers":[{"scheme":"BioProject","value":"PRJNA690895"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA690895","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna690895:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA690895","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna693107","name":"Human Stool Sample Metagenome","displayTitle":"Human Stool Sample Metagenome","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"human gut metagenome","leadOrganizations":["SIDRA MEDICINE"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/01/19; operational lifecycle is not asserted.","statusEvidenceDate":"2021-01-19","description":"This study aimed to understand the relationship between gut microbiota and CSII therapy, evaluating the effect of external factors, such as diet and nationality, in pediatric T1DM subjects living in Qatar.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA693107"],"identifiers":[{"scheme":"BioProject","value":"PRJNA693107"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA693107","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna693107:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA693107","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna693430","name":"Molecular epidemiology Candida auris in Qatar using WGS","displayTitle":"Molecular epidemiology Candida auris in Qatar using WGS","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Candidozyma auris","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/01/20; operational lifecycle is not asserted.","statusEvidenceDate":"2021-01-20","description":"We use a WGS approach to study the epidemiology and genetic relatedness of Candida auris collected from the patients and the hospital environment","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA693430"],"identifiers":[{"scheme":"BioProject","value":"PRJNA693430"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA693430","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna693430:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA693430","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna694427","name":"Microbiome associated with the gut of Saudi Arabian forager bees","displayTitle":"Microbiome associated with the gut of Saudi Arabian forager bees","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/01/24; operational lifecycle is not asserted.","statusEvidenceDate":"2021-01-24","description":"The gut microbiome of forager honeybees (Apis mellifera jemenitica) from Saudi Arabia (Madinah) was investigated to evaluate the composition and spatial organization in different gut portions. Microbiological analyses were performed on the dissected guts compartments (i.e., crop, midgut, ileum and rectum) of honeybee foragers. High-throughput sequencing of bacterial 16S rRNA gene and fungal ITS2 region were used to investigate the microbial communities associated to the gut compartments of this insect.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA694427"],"identifiers":[{"scheme":"BioProject","value":"PRJNA694427"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA694427","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna694427:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA694427","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna698478","name":"SARS-CoV-2 reinfection in a cohort of 43,000 antibody-positive individuals followed for up to 35 weeks","displayTitle":"SARS-CoV-2 reinfection in a cohort of 43,000 antibody-positive individuals followed for up to 35 weeks","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Weill Cornell Medicine in Qatar"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/02/01; operational lifecycle is not asserted.","statusEvidenceDate":"2021-02-01","description":"SARS-CoV-2 reinfection in a cohort of 43,000 antibody-positive individuals followed for up to 35 weeks","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA698478"],"identifiers":[{"scheme":"BioProject","value":"PRJNA698478"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA698478","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna698478:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA698478","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna699142","name":"Genetic Risk of mtDNA Variants in Psoriasis and type 2 diabetes mellitus comorbidity","displayTitle":"Genetic Risk of mtDNA Variants in Psoriasis and type 2 diabetes mellitus comorbidity","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/02/03; operational lifecycle is not asserted.","statusEvidenceDate":"2021-02-03","description":"This study has investigated the genetic risk of mtDNA variations in Psoriasis (Ps) or psoriasis with comorbid T2D (Ps-T2D) in Kuwaiti populations. Therefore, this study aimed to sequence and compare whole mitochondrial genomes from Kuwaiti subjects with Ps, T2D, Ps with T2D comorbidity, and healthy controls to identify mtDNA variants in Arab individuals of Kuwait.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA699142"],"identifiers":[{"scheme":"BioProject","value":"PRJNA699142"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA699142","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna699142:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA699142","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna699251","name":"Two prolonged viremic SARS-CoV-2 infections with conserved viral genome for two months","displayTitle":"Two prolonged viremic SARS-CoV-2 infections with conserved viral genome for two months","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Weill Cornell Medicine in Qatar"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/02/03; operational lifecycle is not asserted.","statusEvidenceDate":"2021-02-03","description":"Two prolonged viremic SARS-CoV-2 infections with conserved viral genome for two months","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA699251"],"identifiers":[{"scheme":"BioProject","value":"PRJNA699251"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA699251","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna699251:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA699251","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna699441","name":"SNPs from Arabian Oryx in Oman","displayTitle":"SNPs from Arabian Oryx in Oman","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["University of Sydney"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/02/04; operational lifecycle is not asserted.","statusEvidenceDate":"2021-02-04","description":"SNP data for a selection of Arabian oryx in the Al-Wusta Wildlife Reserve in Oman. This data was collected to establish pedigrees and enable genetic management of captive-bred populations with the aim to releasing a genetically healthy herd back into the wild.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA699441"],"identifiers":[{"scheme":"BioProject","value":"PRJNA699441"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA699441","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna699441:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA699441","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna699560","name":"16S rRNA gene sequencing of aged oil -contaminated soil samples during the bioremediation process","displayTitle":"16S rRNA gene sequencing of aged oil -contaminated soil samples during the bioremediation process","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/02/04; operational lifecycle is not asserted.","statusEvidenceDate":"2021-02-04","description":"The goal of the study was to study the degradation of total petroleum hydrocarbons (TPHs), polycyclic aromatic hydrocarbons (PAHs) and understand the changes in the bacterial community in soil piles during nine months of pilot-scale bioremediation process of aged soil contaminated with crude oil. The soil samples were collected from a moderately contaminated stockpile (50,000 mg per kg TPH) subjected to a bioremediation experiment. This pile was aerated by mixing and fertilized with a combination of inorganic nutrients (urea; triple phosphate) and compost (50 kg per m3) corresponding to a total amount of C-N-P 50-1-1 to enhance the growth of the indigenous microorganisms. A control soil was taken from an area directly adjacent to the excavated contaminated soil at a depth of 20-30 cm. This soil was not subjected to bioremediation treatment. Three samples were collected from the contaminated stockpile immediately after treatment and 3, 6, and 9 months after treatment. Each sample was prepared by pooling and homogenizing 5 subsamples corresponding to 5 locations randomly chosen along the pile. The soil samples were sieved through a 2mm pore size sieve and the total DNA was isolated. The microbial consortium associated with oil degradation at each interval was revealed through 16S rRNA gene based next-generation sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA699560"],"identifiers":[{"scheme":"BioProject","value":"PRJNA699560"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA699560","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna699560:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA699560","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna701159","name":"Human Stool Sample Metagenome","displayTitle":"Human Stool Sample Metagenome","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"feces metagenome","leadOrganizations":["SIDRA MEDICINE"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/02/10; operational lifecycle is not asserted.","statusEvidenceDate":"2021-02-10","description":"This study aimed to address the importance of Akkermansia muciniphila in T1DM pediatric subjects in Qatar.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA701159"],"identifiers":[{"scheme":"BioProject","value":"PRJNA701159"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA701159","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna701159:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA701159","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna701364","name":"Whole genome sequencing of Pseudomonas atacamensis strain SM1","displayTitle":"Whole genome sequencing of Pseudomonas atacamensis strain SM1","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["UAE University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/02/11; operational lifecycle is not asserted.","statusEvidenceDate":"2021-02-11","description":"Whole genome sequencing ofPseudomonas atacamensis strain SM1, isolated from rhizospheric soil associated with date palm (Phoenix dactylifera) growing in the oasis agroecosystem of United Arab Emirates.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA701364"],"identifiers":[{"scheme":"BioProject","value":"PRJNA701364"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA701364","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna701364:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA701364","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna701372","name":"Biodegradation of estrone in activated sludge","displayTitle":"Biodegradation of estrone in activated sludge","aliases":[],"countries":["Bahrain"],"regionLabel":"Bahrain","geographicScope":"Bahrain connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"activated sludge metagenome","leadOrganizations":["Arabian Gulf University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/02/11; operational lifecycle is not asserted.","statusEvidenceDate":"2021-02-11","description":"In this project, we conducted biochemical and molecular studies to elucidate estrone biodegradation pathways and identify key estrone-degrading bacteria in activated sludge from Tubli wastewater treatment plant in Bahrain. We collected activated sludge samples and used them in laboratory microcosms amended with estrone. Samples were retrieved at time intervals from the test and control microcosms to analyze the biodegradation intermediates by UPLC-HRMS. Moreover, DNA was isolated from the activated sludge samples to study the compositional shifts of the activated sludge bacterial community and identify key estrone degraders by Illumina-MiSeq amplicon sequencing and bioinformatics analyses.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA701372"],"identifiers":[{"scheme":"BioProject","value":"PRJNA701372"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA701372","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna701372:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA701372","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna705402","name":"Archaeal and bacterial diversity in sediments of Oman serpentinized fluids","displayTitle":"Archaeal and bacterial diversity in sediments of Oman serpentinized fluids","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Arizona State University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/02/28; operational lifecycle is not asserted.","statusEvidenceDate":"2021-02-28","description":"This is a study on archaeal and bacterial diversity in sediments of serpentinized fluids expressed at the surface of the Oman Samail Ophiolite. The sediment samples were collected across sites that vary in geochemical composition as a result of geological context and the process of mixing between serpentinized fluids with surrounding surface water. Diversity was assessed through 16S rRNA gene amplicon sequencing. The Earth Microbiome Primer set was used. Amplicons were sequenced using the 2x150 MiSeq Illumina platform.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA705402"],"identifiers":[{"scheme":"BioProject","value":"PRJNA705402"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705402","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna705402:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705402","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna705688","name":"Klebsiella pneumoniae subsp. pneumoniae strain:SA-KpST14 Genome sequencing","displayTitle":"Klebsiella pneumoniae subsp. pneumoniae strain:SA-KpST14 Genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Klebsiella pneumoniae subsp. pneumoniae","leadOrganizations":["King Abdullah International Medical Research Center (KAIMRC)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/03/08; operational lifecycle is not asserted.","statusEvidenceDate":"2021-03-08","description":"Complete Genome Sequencing of Klebsiella pneumoniae co-producing OXA-48 and NDM-1 Carbapenemases in Riaydh, Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA705688"],"identifiers":[{"scheme":"BioProject","value":"PRJNA705688"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705688","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna705688:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA705688","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna714822","name":"Tarmat associated bacterial community in the coastal line of Qatar: An amplicon-based metagenomic approach","displayTitle":"Tarmat associated bacterial community in the coastal line of Qatar: An amplicon-based metagenomic approach","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/03/16; operational lifecycle is not asserted.","statusEvidenceDate":"2021-03-16","description":"Tarmat associated bacterial community in the coastal line of Qatar: An amplicon-based metagenomic approach","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA714822"],"identifiers":[{"scheme":"BioProject","value":"PRJNA714822"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA714822","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna714822:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA714822","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna720541","name":"Biogeographic comparison of bacterial communities of arid mangrove forest soils at verying spatial scales","displayTitle":"Biogeographic comparison of bacterial communities of arid mangrove forest soils at verying spatial scales","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology (KAUST)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/04/08; operational lifecycle is not asserted.","statusEvidenceDate":"2021-04-08","description":"Comparison of the bacterial communities of mangrove forest soils. Samples were collected from two countries (Australia, Saudi Arabia), at contrasting sites, from varying zones within each forest, and of different depths. This data set exposes biogeographic patterns that are governed by local environmental factors rather, and less so by geographic region.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA720541"],"identifiers":[{"scheme":"BioProject","value":"PRJNA720541"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA720541","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna720541:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA720541","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna721032","name":"COVID-19 Outbreak: Model-Driven Impact Analysis Comparing Oman and Pakistan","displayTitle":"COVID-19 Outbreak: Model-Driven Impact Analysis Comparing Oman and Pakistan","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Severe acute respiratory syndrome coronavirus 2","leadOrganizations":["International Applied Computing & Applications"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/04/10; operational lifecycle is not asserted.","statusEvidenceDate":"2021-04-10","description":"The model is calibrated based on epidemic data and events as they happened. The simulation results are quite disturbing, indicating that, during a process of stringent social distancing and testing strategies, a small perturbation can lead to quite undesirable outcomes.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Random survey","Sequencing","Genome"],"accessionIds":["PRJNA721032"],"identifiers":[{"scheme":"BioProject","value":"PRJNA721032"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA721032","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna721032:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA721032","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna723731","name":"Enterococcus faecium strain:S6 Genome sequencing and assembly","displayTitle":"Enterococcus faecium strain:S6 Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Enterococcus faecium","leadOrganizations":["Kuwait institute for scientific research"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/05/25; operational lifecycle is not asserted.","statusEvidenceDate":"2021-05-25","description":"The emergence of antimicrobial resistance in the food chain and the consumer's demand for safe food without chemical preservatives have generated much interest in natural antimicrobials. The aim of this study is to Characterize bacteriocin-producing lactic acid bacteria isolated from camel milk for protentional biotechnological application.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA723731"],"identifiers":[{"scheme":"BioProject","value":"PRJNA723731"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA723731","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna723731:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA723731","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna725418","name":"Cryptococcus neoformans var grubii environmental isolates","displayTitle":"Cryptococcus neoformans var grubii environmental isolates","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Umm Al-Qura University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/04/27; operational lifecycle is not asserted.","statusEvidenceDate":"2021-04-27","description":"Cryptococcus neoformans var grubii isolated from pigeon droppings in Western Region in Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA725418"],"identifiers":[{"scheme":"BioProject","value":"PRJNA725418"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA725418","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna725418:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA725418","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna726586","name":"Multiomic analysis of the Arabian camel (Camelus dromedarius) kidney reveals a role for cholesterol in water conservation","displayTitle":"Multiomic analysis of the Arabian camel (Camelus dromedarius) kidney reveals a role for cholesterol in water conservation","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Camelus dromedarius","leadOrganizations":["Molecular Neuroendocrinology Group, Bristol Medical School, University of Bristol"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/04/30; operational lifecycle is not asserted.","statusEvidenceDate":"2021-04-30","description":"The one-humped Arabian camel (Camelus dromedarius) is the most important livestock animal in arid and semi-arid regions and continues to provide basic necessities to millions of people. In the current context of global warming, there is renewed interest in the adaptive mechanisms that enable camelids to survive in arid conditions. Recent investigations described genomic signatures that revealed evolutionary adaptations to desert environments. We now present a comprehensive catalogue of the transcriptomes and proteomes of the dromedary kidney and describe how the gene expression profiles of Differentially Expressed Genes (DEGs) are modulated as a consequence of chronic dehydration and subsequent acute rehydration. We performed RNAseq and quantification of peptides in samples from 15 dromedaries (5 controls, 5 dehydrated and 5 rehydrated). Gene Ontology analyses suggested an enrichment of the cholesterol biosynthetic process and an overrepresentation of categories related to ion transmembrane transport in the camel kidney, and RTN analyses confirmed alterations in the transcriptional machinery involved in cholesterol synthesis. These data were validated by RT-qPCR. Based on our hypothesis of a role for cholesterol during dehydration, we identified DEGs with roles in the countercurrent multiplication process which are affected by changes in the level of cholesterol. Thus, we further validated differentially expressed genes with known roles in water conservation which are affected by changes in cholesterol levels. Our datasets suggest that suppression of cholesterol biosynthesis may facilitate water retention in the kidney by indirectly facilitating the AQP2-mediated water reabsorption. Overall design: Nineteen male dromedary camels aged 4-5 years, body weight range 276-416 kg, were used in the present study. The camels were supplied with alfalfa hay as feed and ranch-housed in the United Arab Emirates. Veterinary supervision was provided throughout the experimental period and no signs of distress or illness were identified. After a short adaptive period, the camels were divided into 3 groups, control (n=5), dehydrated (n=8) and rehydrated (n=6). The control group had free access to food and water during the entire experimental period. The dehydrated group was water-deprived but had ad libitum access to food for 20 days. Meanwhile the rehydrated group was subjected to the same protocol as the dehydrated animals followed by ad libitum water supply for 3 additional days. After the experimental period, the camels were sacrificed in the local central abattoir for human consumption in April 2016. Kidney samples were harvested within 1 hour after killing the animals, immediately frozen in liquid nitrogen and kept at -80°C for later physiological, histological, morphological and molecular analysis. Samples were shipped frozen on dry ice to the University of Bristol under the auspices of a DEFRA Import Licence (TARP/2016/063). This study was approved by the Animal Ethics Committee of the United Arab Emirates University (approval ID: AE/15/38) and the University of Bristol Animal Welfare and Ethical Review Board. Total RNA was extracted from fresh frozen kidney medulla and cortex of 5 control, 5 dehydrated and 5 rehydrated camels (for a total of 30 samples). These 15 animals were randomly selected out of the 19 animals included in the experimental set up while the remaining 4 were used for preliminary analyses only. Frozen tissue was added to a pre-cooled mortar containing a small volume of liquid nitrogen. Tissue was then grounded to a fine powder using a pestle and the nitrogen was allowed to evaporate. The powdered tissue was placed into pre-chilled tubes on dry ice and stored at -80°C. For RNA extraction, 1ml of Qiazol (79306, Qiagen) was added to 100mg of powdered tissue, then immediately vortexed for 2 minutes, then incubated on ice for 10 minutes. Lysed samples were spun at 12000xg for 10 minutes at 4°C and the supernatant was transferred to a new tube. 1/5 volume Chloroform (22711.244, VWR) was added to each sample and vortexed for 15 seconds. Samples were then spun at 12000xg for 15 minutes at 4°C. 350ml of the upper phase was removed and mixed with an equal volume of absolute ethanol. RNA was extracted using ZymoTM Direct-Zol RNA miniprep (Zymo Research) as per the manufacturer’s instructions. Total RNA concentration and 260/280 ratios were measured using a Nanodrop 2000c (Thermo Scientific). Illumina Sequencing was performed by Bristol Genomics Facility, University of Bristol, using the poly-A selection method for library preparation and the Illumina NextSeq500 system. RIN were 8.1 (SD=0.5), 7.7 (SD=0.2) and 7.6 (SD=0.6) for control, dehydrated and rehydrated cortex samples, and 8.5 (SD=0.5), 8.8 (SD=0.2) and 8.7 (SD=0.4) for control, dehydrated and rehydrated medulla samples, respectively.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA726586"],"identifiers":[{"scheme":"BioProject","value":"PRJNA726586"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA726586","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna726586:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA726586","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna728972","name":"Respiratory Viruses in indoor aerosols","displayTitle":"Respiratory Viruses in indoor aerosols","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/05/11; operational lifecycle is not asserted.","statusEvidenceDate":"2021-05-11","description":"The study was aimed to detect and quantify the presence of respiratory viruses including SARS CoV2 in aerosol samples collected from indoor hospital environments of Kuwait.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA728972"],"identifiers":[{"scheme":"BioProject","value":"PRJNA728972"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA728972","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna728972:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA728972","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna730402","name":"Klebsiella pneumoniae WGS","displayTitle":"Klebsiella pneumoniae WGS","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Central Public Health Laboratories","Central Public Health Laboratories Oman"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/05/17; operational lifecycle is not asserted.","statusEvidenceDate":"2021-05-17","description":"Whole genome sequencing data in Oman on Resistance Against Carbapenems in Klebsiella pneumoniae: First report of KPC","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA730402"],"identifiers":[{"scheme":"BioProject","value":"PRJNA730402"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA730402","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna730402:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA730402","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna733525","name":"Rhipicephalus cf. camicasi from Saudi Arabia sequencing","displayTitle":"Rhipicephalus cf. camicasi from Saudi Arabia sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["University of Sydney"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/05/28; operational lifecycle is not asserted.","statusEvidenceDate":"2021-05-28","description":"Rhipicephaus camicasi was originally described from camels in Ethiopia and it thought to be distributed in Africa, Arabian Peninsula and Mediterranean region. It belongs to the Rhipicephalus sanguineus species complex. The species identity of R. camicasi has been ambiguous because of the morphological inconsistency and absence of reference DNA sequences. In the present study, the entire mitochondrial genome of R. cf. camicasi (~15kb) from Saudi Arabia collected from a camel was sequenced. The current study delivers molecular reference for material that resembles R. camicasi and was collected from camel the type host of R. camicasi. We propose to consider the current material including the complete mitochondrial genome as reference for R. camicasi.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA733525"],"identifiers":[{"scheme":"BioProject","value":"PRJNA733525"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA733525","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna733525:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA733525","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna734451","name":"16S rRNA gene sequencing of oil contaminated soil samples treated with compost or compost and surfactant","displayTitle":"16S rRNA gene sequencing of oil contaminated soil samples treated with compost or compost and surfactant","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/06/02; operational lifecycle is not asserted.","statusEvidenceDate":"2021-06-02","description":"The goal of this project was to study the overall process of bioremediation through following, in parallel, the evolution of total petroleum hydrocarbons (TPHs) and HMW-PAHs concentrations, and the diversity and abundance of the bacterial community at different stages of bioremediation using metagenomics. The soil samples were collected from a moderately contaminated stockpile in Kuwait. Microcosms were set up to assess the effect of different treatments (adding inorganic nutrients; Surfactant) on TPHs and PAHs degradation. A control soil was taken from an area directly adjacent to the excavated contaminated soil at a depth of 20-30 cm. This soil was not subjected to bioremediation treatment. Three samples were collected from the contaminated stockpile immediately after treatment (0 days), 15 and 90 days after treatment. The soil samples were sieved through a 2mm pore size sieve and the total DNA was isolated. The microbial consortium associated with oil degradation at each interval was revealed through 16S rRNA gene-based next-generation sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA734451"],"identifiers":[{"scheme":"BioProject","value":"PRJNA734451"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA734451","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna734451:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA734451","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna737193","name":"Microbe composition in Hyalomma anatolicum collected from livestock in the United Arab Emirates using next-generation sequencing","displayTitle":"Microbe composition in Hyalomma anatolicum collected from livestock in the United Arab Emirates using next-generation sequencing","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["United Arab Emirates University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/06/13; operational lifecycle is not asserted.","statusEvidenceDate":"2021-06-13","description":"Microbe composition in Hyalomma anatolicum collected from livestock in the United Arab Emirates using next-generation sequencing","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA737193"],"identifiers":[{"scheme":"BioProject","value":"PRJNA737193"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA737193","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna737193:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA737193","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna739171","name":"RNA sequencing of leaf lettuce grown under blue, red or white light","displayTitle":"RNA sequencing of leaf lettuce grown under blue, red or white light","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/06/18; operational lifecycle is not asserted.","statusEvidenceDate":"2021-06-18","description":"Lettuce (Lactuca sativa) belongs to Asteraceae family, grown in various parts of the world for use as a leafy vegetable. Although the application of light-emitting diode (LED) in controlled plant production systems have been successfully used to enhance nutritional quality and plant growth efficiently, molecular basis of plant response to physical factors such as light quality on plants in general and on leafy vegetable crops in particular are scarce. In this study, we sequenced and de novo assembled the transcriptomes of leaf lettuce (Lactuca sativavar. 'New Red Fire) grown hydroponically in a modular agricultural production system under three different types of LED lighting: red, blue and white light.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA739171"],"identifiers":[{"scheme":"BioProject","value":"PRJNA739171"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA739171","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna739171:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA739171","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna740144","name":"DARWIN21 - Jizan 2012, Saudi Arabia (SA) collection","displayTitle":"DARWIN21 - Jizan 2012, Saudi Arabia (SA) collection","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["KAUST"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/06/23; operational lifecycle is not asserted.","statusEvidenceDate":"2021-06-23","description":"Endophytic bacteria isolated from the soil, rhizosphere and roots of desert plant Indigofera argentea collected from Jizan, Saudi Arabia. Genome sequencing and assembly","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA740144"],"identifiers":[{"scheme":"BioProject","value":"PRJNA740144"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA740144","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna740144:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA740144","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna741078","name":"RNA sequencing of Arabidopsis treated with lead or vanadium","displayTitle":"RNA sequencing of Arabidopsis treated with lead or vanadium","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/06/24; operational lifecycle is not asserted.","statusEvidenceDate":"2021-06-24","description":"Heavy metal toxicity as a result of industrial processes and human activities has been causing adverse effects on the environment. Lead (Pb) and Vanadium (V) are present in crude oil-contaminated land and water bodies. They pose a potential risk to the flora and fauna in terrestrial and aquatic ecosystems. We used RNA sequencing to characterize the gene expression profiles of Arabidopsis plants exposed to Pb and V. The main aim was to study the changes in gene expression in A. thaliana plants exposed to V and Pb and compare it with the mock-treated (water) control samples.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA741078"],"identifiers":[{"scheme":"BioProject","value":"PRJNA741078"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA741078","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna741078:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA741078","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna742152","name":"Salvadora persica isolate:KAUST Genome sequencing and assembly","displayTitle":"Salvadora persica isolate:KAUST Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Salvadora persica","leadOrganizations":["salim bougouffa"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/06/29; operational lifecycle is not asserted.","statusEvidenceDate":"2021-06-29","description":"Sequencing and assembly using HiFi and CLR PacBio data from Salvadora persica in Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA742152"],"identifiers":[{"scheme":"BioProject","value":"PRJNA742152"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA742152","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna742152:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA742152","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna743134","name":"Aqueous geochemical and microbial variation across discrete depth intervals in a peridotite aquifer assessed using a packer system in the Samail Ophiolite, Oman","displayTitle":"Aqueous geochemical and microbial variation across discrete depth intervals in a peridotite aquifer assessed using a packer system in the Samail Ophiolite, Oman","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["University of Colorado - Boulder"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/07/01; operational lifecycle is not asserted.","statusEvidenceDate":"2021-07-01","description":"16S rRNA gene sequencing data obtained from wells BA1A and BA1D in Samail Ophiolite, Oman in 2018 and 2019","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA743134"],"identifiers":[{"scheme":"BioProject","value":"PRJNA743134"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA743134","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna743134:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA743134","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna743597","name":"Genome sequencing and assembly of opportunistic fungal pathogens","displayTitle":"Genome sequencing and assembly of opportunistic fungal pathogens","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Rhodotorula mucilaginosa","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/07/21; operational lifecycle is not asserted.","statusEvidenceDate":"2021-07-21","description":"Genome sequencing and assembly of opportunistic fungal pathogens in the state of Qatar","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA743597"],"identifiers":[{"scheme":"BioProject","value":"PRJNA743597"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA743597","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna743597:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA743597","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna748027","name":"RNA sequencing of Sparidentex hasta larvae exposed to water extractable fraction of Kuwait crude oil","displayTitle":"RNA sequencing of Sparidentex hasta larvae exposed to water extractable fraction of Kuwait crude oil","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research (KISR)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/07/19; operational lifecycle is not asserted.","statusEvidenceDate":"2021-07-19","description":"The present study was performed to understand the effects of petroleum hydrocarbons on early life stages of development of marine fish species. The study specifically focuses on determining the genotoxic effects on sobaity sea bream (Sparidentex hasta) fish larvae exposed to Kuwait crude oil (KCO). Newly hatched sobaity sea bream larvae were exposed to water-accommodated fractions (WAF) of KCO. The total RNA was isolated at different time intervals from control and WAF treated larvae using Trizol reagent. Paired-end based RNA sequencing was performed. Differential expression analysis was performed to study the changes in gene expression in control and WAF exposed sobaity sea bream larvae at 3, 6, 24, 48, 72 or 96 h time points.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA748027"],"identifiers":[{"scheme":"BioProject","value":"PRJNA748027"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA748027","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna748027:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA748027","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna750412","name":"Acropora downingi in northeastern Arabian Peninsula","displayTitle":"Acropora downingi in northeastern Arabian Peninsula","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kobenhavn Universitet"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/07/28; operational lifecycle is not asserted.","statusEvidenceDate":"2021-07-28","description":"The study aimed to provide a more fundamental aim of understanding the structure of Acropora downingi in extreme environmental conditions. The sampling was carried out across the northeastern Arabian Peninsula, the warmest sea on Earth where corals are found. Acropora downingi is a non-model regional endemic table coral species. We used neutral genetic markers and invoked the neutral theory of molecular evolution to explain the slightly structure displayed for the population.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA750412"],"identifiers":[{"scheme":"BioProject","value":"PRJNA750412"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA750412","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna750412:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA750412","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna751432","name":"Salmonella enterica subsp. enterica serovar Minnesota strain:SA18578 Genome sequencing","displayTitle":"Salmonella enterica subsp. enterica serovar Minnesota strain:SA18578 Genome sequencing","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Salmonella enterica subsp. enterica serovar Minnesota","leadOrganizations":["King Abdullah International Medical Research Center (KAIMRC)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/08/09; operational lifecycle is not asserted.","statusEvidenceDate":"2021-08-09","description":"Here, we report the complete genome sequence of colistin-susceptible Salmonella enterica serotype Minnesota (named SA18578) belonged to sequence type (ST) 548 carrying the mcr-9 gene in IncHI2 plasmid isolated from chicken meat in Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing","Sequencing","Genome"],"accessionIds":["PRJNA751432"],"identifiers":[{"scheme":"BioProject","value":"PRJNA751432"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA751432","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna751432:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA751432","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna754103","name":"Genome Survey Analysis of Acacia pachceras","displayTitle":"Genome Survey Analysis of Acacia pachceras","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/08/12; operational lifecycle is not asserted.","statusEvidenceDate":"2021-08-12","description":"Genome sequencing of Acacia pachyceras","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA754103"],"identifiers":[{"scheme":"BioProject","value":"PRJNA754103"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA754103","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna754103:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA754103","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna754156","name":"Application of Array CGH technique for the clinical diagnosis of developmental delay and congenital malformations in Saudi Arabia [244k]","displayTitle":"Application of Array CGH technique for the clinical diagnosis of developmental delay and congenital malformations in Saudi Arabia [244k]","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Bioinformatics, Center of Excellence in Genomic Medicine Research, King Abdulaziz University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/08/12; operational lifecycle is not asserted.","statusEvidenceDate":"2021-08-12","description":"Chromosomal imbalances are implicated in the etiology of developmental delay (DD) and congenital malformation (CM). We therefore conducted high resolution array comparative genomic hybridization (array CGH) of sixty three Saudi patients  [11 by Agilent-001850/CGH1x244A and 52 by Agilent-014693/CGH2x400k] for investigating and understanding the genetic heterogeneity underlying DD/CM. A total of 76 disease associated copy number variants (CNVs) were detected in twenty four patients including 1p36, 1q21, 3p23, 6p24, 7q11, 8q24, 9q33, 10p14, 11p15, 11q12, 11q24, 13q21, 15q13, 16p13, 18q23, trisomy 18, 20q11, 21q22, 22q11.21, 47,XXY and 45,X0. The diagnosis rate of array CGH was 2.4 times higher than karyotyping. Overall design: A total of 63 patients with developmental delay (DD) and congenital malformation (CM) were recruited for the study. Agilent Euro of Homo sapiens were used reference DNA [Male and Female: Part No 5190-3796 and 5190-3797].  To investigate genome defects, we applied high-density array CGH using SurePrint G3 Human CGH Microarray Kit, 1x244 K and 2x400 K, consisting of 244,000 and 400,000 copy number probes respectively (Agilent Technologies, Santa Clara, California, USA) using UCSC hg18 reference genome. 11 samples.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Variation","Array","Genome"],"accessionIds":["PRJNA754156"],"identifiers":[{"scheme":"BioProject","value":"PRJNA754156"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA754156","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna754156:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA754156","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna754450","name":"Application of Array CGH technique for the clinical diagnosis of developmental delay and congenital malformations in Saudi Arabia [400k]","displayTitle":"Application of Array CGH technique for the clinical diagnosis of developmental delay and congenital malformations in Saudi Arabia [400k]","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Bioinformatics, Center of Excellence in Genomic Medicine Research, King Abdulaziz University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/08/13; operational lifecycle is not asserted.","statusEvidenceDate":"2021-08-13","description":"Chromosomal imbalances are implicated in the etiology of developmental delay (DD) and congenital malformation (CM). We therefore conducted high resolution array comparative genomic hybridization (array CGH) of sixty three Saudi patients [11 by Agilent-001850/CGH1x244A and 52 by Agilent-014693/CGH2x400k] for investigating and understanding the genetic heterogeneity underlying DD/CM. A total of 76 disease associated copy number variants (CNVs) were detected in twenty four patients including 1p36, 1q21, 3p23, 6p24, 7q11, 8q24, 9q33, 10p14, 11p15, 11q12, 11q24, 13q21, 15q13, 16p13, 18q23, trisomy 18, 20q11, 21q22, 22q11.21, 47,XXY and 45,X0. The diagnosis rate of array CGH was 2.6 times higher than karyotyping. Overall design: A total of 63 patients with developmental delay (DD) and congenital malformation (CM) were recruited for the study. Agilent Euro of homo sapines were used reference DNA [Male and Female: Part No 5190-3796 and 5190-3797].  To investigate genome defects, we applied high-density array CGH using SurePrint G3 Human CGH Microarray Kit, 1x244 K and 2x400 K, consisting of 244,000 and 400,000 copy number probes respectively (Agilent Technologies, Santa Clara, California, USA) using UCSC hg18 reference genome.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Variation","Array","Genome"],"accessionIds":["PRJNA754450"],"identifiers":[{"scheme":"BioProject","value":"PRJNA754450"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA754450","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna754450:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA754450","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna754451","name":"Application of Array CGH technique for the clinical diagnosis of developmental delay and congenital malformations in Saudi Arabia","displayTitle":"Application of Array CGH technique for the clinical diagnosis of developmental delay and congenital malformations in Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Not stated","leadOrganizations":["Bioinformatics, Center of Excellence in Genomic Medicine Research, King Abdulaziz University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/08/13; operational lifecycle is not asserted.","statusEvidenceDate":"2021-08-13","description":"This SuperSeries is composed of the SubSeries listed below. Overall design: Refer to individual Series","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA754451"],"identifiers":[{"scheme":"BioProject","value":"PRJNA754451"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA754451","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna754451:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA754451","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna756122","name":"PRS_AVA-Seq","displayTitle":"PRS_AVA-Seq","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Weill Cornell Medicine in Qatar"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/08/19; operational lifecycle is not asserted.","statusEvidenceDate":"2021-08-19","description":"High-resolution protein fragment interactions using AVA-Seq on a human reference set","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA756122"],"identifiers":[{"scheme":"BioProject","value":"PRJNA756122"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA756122","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna756122:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA756122","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna758554","name":"Platygyra daedalea ddRAD Raw sequence reads","displayTitle":"Platygyra daedalea ddRAD Raw sequence reads","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Platygyra daedalea","leadOrganizations":["UNC Charlotte"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/08/28; operational lifecycle is not asserted.","statusEvidenceDate":"2021-08-28","description":"ddRAD sequencing reads from Platygyra daedalea populations in the Persian/Arabian Gulf and Gulf of Oman.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA758554"],"identifiers":[{"scheme":"BioProject","value":"PRJNA758554"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA758554","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna758554:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA758554","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna761521","name":"Pseudomonas sp. S5(2021) Genome sequencing and assembly","displayTitle":"Pseudomonas sp. S5(2021) Genome sequencing and assembly","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Pseudomonas sp. S5(2021)","leadOrganizations":["King Abdulaziz university"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/09/20; operational lifecycle is not asserted.","statusEvidenceDate":"2021-09-20","description":"Since Pseudomonas strains are one of the most commonly recorded crude oil strains in the world, a thorough analysis of their degradation and absorption of crude oil is very important. Several reports have emphasized the importance and suitability of crude oil microorganisms for biodegradation in various ecologically polluted sites. This is to investigate the entire genome of Pseudomonas sp., with a focus on its ability to degrade crude oil on the Saudi Red Sea coast near the Yanbu industrial area. The strain S5 isolated from a crude oil polluted site in Yanbu, Saudi Arabia, is a powerful hydrocarbon degrader. The main goal of this research is to examine the entire genome of a potent Pseudomonas sp. isolated from the Yanbu region. Emphasis will be placed on understanding genetic and environmental factors associated with crude oil degradation, general adaptation, and uptake in crude oil-contaminated environments","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA761521"],"identifiers":[{"scheme":"BioProject","value":"PRJNA761521"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA761521","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna761521:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA761521","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna762188","name":"Isolation of Bacteriophages from Wastewater Treatment Plant in Qatar.","displayTitle":"Isolation of Bacteriophages from Wastewater Treatment Plant in Qatar.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Carnegie Mellon University-Qatar (CMU-Q)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/09/10; operational lifecycle is not asserted.","statusEvidenceDate":"2021-09-10","description":"The gene products of the bacteriophages isolated from Wastewater Treatment Plant in Qatar would be studied for potential Industrial applications.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA762188"],"identifiers":[{"scheme":"BioProject","value":"PRJNA762188"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA762188","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna762188:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA762188","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna763394","name":"Genome-Wide Association Study of Hospitalized COVID-19 Patients in the United Arab Emirates","displayTitle":"Genome-Wide Association Study of Hospitalized COVID-19 Patients in the United Arab Emirates","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Homo sapiens","leadOrganizations":["Center of Biotechnology, Khalifa University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/09/15; operational lifecycle is not asserted.","statusEvidenceDate":"2021-09-15","description":"The heterogeneity in symptomatology and phenotypic profile attributable to COVID-19 is widely unknown. For the first time, our study provides the unique advantage of obtaining samples from the Middle Eastern population, an underrepresented region in genetic studies, and explore new genotypes in this population that will yield to novel genetic association. Specifically, we studied 646 patients in the United Arab Emirates.  We describe strong association signals from genes on chromosomes 2, 3, 5, 11 and 13, which carry genes that are expressed in the lung, have been associated with tumour progression, emphysema, airway obstruction, and surface tension within the lung. Identifying genetic variants associated to COVID-19 susceptibility and severity may uncover novel biological insights into disease pathogenesis and identify mechanistic targets for therapeutic and vaccine development. Overall design: The objective of this manuscript is to conduct a genome wide association study (GWAS) of COVID-19 severity to improve the understanding of potentially causal targets for SARS-CoV-2. This cross-sectional study recruited 646 consenting participants that have tested positive for SARS-CoV-2 by Real-Time Polymerase Chain Reaction (RT-PCR) via nasopharyngeal swabs. Participants were prospectively recruited from six collection sites across the UAE including hospitals (3), and quarantine camps (3), from April 1, 2020, to January 31, 2021. The selection criteria were: (1) positive COVID-19 test for a single individual, (2) resident of the UAE, and (3) able to provide an informed consent and complete the survey.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Variation","Array","Genome"],"accessionIds":["PRJNA763394"],"identifiers":[{"scheme":"BioProject","value":"PRJNA763394"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA763394","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna763394:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA763394","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna763903","name":"Temporal pattern of microbes in Hyalomma dromedarii ticks from camels in the United Arab Emirates using high-throughput sequencing","displayTitle":"Temporal pattern of microbes in Hyalomma dromedarii ticks from camels in the United Arab Emirates using high-throughput sequencing","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["United Arab Emirates University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/09/16; operational lifecycle is not asserted.","statusEvidenceDate":"2021-09-16","description":"Temporal pattern of microbes in Hyalomma dromedarii ticks from camels in the United Arab Emirates using high-throughput sequencing","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA763903"],"identifiers":[{"scheme":"BioProject","value":"PRJNA763903"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA763903","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna763903:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA763903","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna766336","name":"Bacterial communities associated with inhalable and non-inhalable fraction of air","displayTitle":"Bacterial communities associated with inhalable and non-inhalable fraction of air","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/09/26; operational lifecycle is not asserted.","statusEvidenceDate":"2021-09-26","description":"Bacterial Communities in size fractionated aerosols","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA766336"],"identifiers":[{"scheme":"BioProject","value":"PRJNA766336"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA766336","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna766336:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA766336","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna766761","name":"Whole genome sequence of Haloxylon","displayTitle":"Whole genome sequence of Haloxylon","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/09/27; operational lifecycle is not asserted.","statusEvidenceDate":"2021-09-27","description":"Native Plant of Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA766761"],"identifiers":[{"scheme":"BioProject","value":"PRJNA766761"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA766761","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna766761:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA766761","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna774497","name":"The QChip1 Knowledgebase and Microarray for Precision Medicine in Qatar","displayTitle":"The QChip1 Knowledgebase and Microarray for Precision Medicine in Qatar","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Weill Cornell Medicine"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/10/26; operational lifecycle is not asserted.","statusEvidenceDate":"2021-10-26","description":"Whole genome sequence and custom array genotype data produced and analyzed as part of the QChip1 project. Manuscript accepted in principle for publication at NPJ Genomic Medicine","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA774497"],"identifiers":[{"scheme":"BioProject","value":"PRJNA774497"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA774497","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna774497:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA774497","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna780603","name":"Bioinformatic analysis of Protein Disulfide Isomerase A1  (PDIA1)-associated pathways towards developing stratified  breast cancer therapies","displayTitle":"Bioinformatic analysis of Protein Disulfide Isomerase A1  (PDIA1)-associated pathways towards developing stratified  breast cancer therapies","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Department of Pharmacology & Toxicology, Faculty of Medicine, Health Sciences Centre, Kuwait University"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/11/15; operational lifecycle is not asserted.","statusEvidenceDate":"2021-11-15","description":"The oxidoreductase protein disulfide isomerase A1 (PDIA1) functions as a cofactor for  many transcription factors including the estrogen receptor alpha (ERα), the NF-κΒ, the nuclear  factor erythroid 2-like 2 (NRF2) and regulates the protein stability of the tumor suppressor p53.  Taking this into account we hypothesized that PDIA1, by differentially modulating the gene  expression of diverse subsets of genes in the ERα positive versus the ERα negative breast cancer  cells, modifies dissimilar pathways in the two types of breast cancer. This hypothesis was  investigated using RNA-seq data from PDIA1-silenced MCF-7 (ERα+) and MDA-MB-231 (ERα-)  breast cancer cells treated with either interferon gamma (IFN-γ) or etoposide (ETO) and the  obtained data were further analyzed using a variety of bioinformatic tools alongside clinical  relevance assessment via Kaplan-Meier patient survival curves. The results highlighted the dual  role of PDIA1 in suppressing carcinogenesis in the ERα+ breast cancer patients by negatively  regulating the response to reactive oxygen species and promoting carcinogenesis by inducing cell  cycle progression. In the ERα- breast cancer patients PDIA1 prevents tumor development by  regulating the NF-kappa B and p53 by modulating cell migration and inducing breast cancer  progression through control of cytokine signaling and the immune response. The findings  reported in this study shed light on the differential pathways regulating carcinogenesis in the  ERα+ and ERα- breast cancer patients and could help identify therapeutic targets selectively  effective in the ERα+ versus the ERα- patients. Overall design: RNA-sequencing study. 24 samples. Two cell lines. Three replicates per condition. Cells were treated with either etoposide (ETOP) or Interferon-Gamma (INF/IFN) and either with scramble siRNA or siRNA against P4HB (PDIA1).","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA780603"],"identifiers":[{"scheme":"BioProject","value":"PRJNA780603"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA780603","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna780603:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA780603","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna781451","name":"Qatari salivary microbiome","displayTitle":"Qatari salivary microbiome","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"human saliva metagenome","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/11/18; operational lifecycle is not asserted.","statusEvidenceDate":"2021-11-18","description":"The profiling of Qatari salivary microbiome","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Metagenome","Sequencing","Genome"],"accessionIds":["PRJNA781451"],"identifiers":[{"scheme":"BioProject","value":"PRJNA781451"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA781451","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna781451:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA781451","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna783270","name":"Bacterioplankton community composition and functional analysis in coastal waters of Kuwait","displayTitle":"Bacterioplankton community composition and functional analysis in coastal waters of Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait University, Faculty of Science"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/11/24; operational lifecycle is not asserted.","statusEvidenceDate":"2021-11-24","description":"Samples were collected and sequenced from five locations along Kuwait coast in autumn (October) and in spring (April). The study aimed to use metagenomic 16S rRNA high throughput sequencing to determine the seasonal changes in bacterioplankton assemblages composition, diversity and function in Kuwaiti waters","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA783270"],"identifiers":[{"scheme":"BioProject","value":"PRJNA783270"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA783270","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna783270:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA783270","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna786273","name":"Escherichia coli Genome sequencing and assembly","displayTitle":"Escherichia coli Genome sequencing and assembly","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Escherichia coli","leadOrganizations":["Qatar University"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/09/27; operational lifecycle is not asserted.","statusEvidenceDate":"2022-09-27","description":"Colistin resistant Escherichia coli isolates harbouring mcr-1, isolated from retail chicken carcasses and fecal samples from broiler chicken","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA786273"],"identifiers":[{"scheme":"BioProject","value":"PRJNA786273"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA786273","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna786273:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA786273","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna79085","name":"Taif and South Platte Rivers Sediment Samples Targeted Locus (Loci)","displayTitle":"Taif and South Platte Rivers Sediment Samples Targeted Locus (Loci)","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"uncultured microorganism","leadOrganizations":["King Abdullah University of Science and Technology"],"partnerOrganizations":[],"startYear":2011,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2011/12/13; operational lifecycle is not asserted.","statusEvidenceDate":"2011-12-13","description":"The scope and purpose of this research is to investigate the microbial community structures in field-scale and artificial-scale managed aquifer recharge systems, which actually consist of the follow through processes of surface water to underground water. The surface water leaks from surface soil or sediment through vadose soil to underground water,, which would be used as source water again. The microbial community during this process is in charge of diverse chemical degradation, thus is necessary to reveal the characteristics   of their population, which would be helpful for better design of managed aquifer recharge systems. The field samples were collected from Taif River, Taif, Saudi Arabia and South Platte River, CO, USA during different seasons.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Targeted Locus (Loci)","Sequencing","Genome"],"accessionIds":["PRJNA79085"],"identifiers":[{"scheme":"BioProject","value":"PRJNA79085"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA79085","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna79085:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA79085","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna791460","name":"Metagenomic Study of Microbial Community in Wastewater Effluents.","displayTitle":"Metagenomic Study of Microbial Community in Wastewater Effluents.","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Carnegie Mellon University-Qatar (CMU-Q)"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2021/12/21; operational lifecycle is not asserted.","statusEvidenceDate":"2021-12-21","description":"Wastewater effluent samples from different stages of wastewater treatment were collected followed by 16S metagenomic sequencing using Illumina and Ion Torrent platforms. 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operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-14","description":"Pyrosequencing of contaminated soils of Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA816075"],"identifiers":[{"scheme":"BioProject","value":"PRJNA816075"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816075","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna816075:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816075","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna816343","name":"HLA-DRB1 and DQB1 alleles, haplotypes and genotypes in Emirati patients with Type 1 Diabetes","displayTitle":"HLA-DRB1 and DQB1 alleles, haplotypes and genotypes in Emirati patients with Type 1 Diabetes","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["United Arab Emirates"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/03/15; operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-15","description":"HLA-DRB1 and DQB1 alleles, haplotypes and genotypes in Emirati patients with Type 1 Diabetes","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA816343"],"identifiers":[{"scheme":"BioProject","value":"PRJNA816343"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816343","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna816343:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816343","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna816441","name":"Understanding the role of GLUT2 in dysglycemia associated with Fanconi-Bickel syndrome","displayTitle":"Understanding the role of GLUT2 in dysglycemia associated with Fanconi-Bickel syndrome","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Not stated","leadOrganizations":["In collaboration with Department of Biomedical Sciences, Research Department - Maternal and Child Health Program, Sidra Medicine and Qatar University"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/03/15; operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-15","description":"This SuperSeries is composed of the SubSeries listed below. Overall design: Refer to individual Series","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA816441"],"identifiers":[{"scheme":"BioProject","value":"PRJNA816441"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816441","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna816441:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816441","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna816446","name":"Understanding the role of GLUT2 in dysglycemia associated with Fanconi-Bickel syndrome (NanoString miRNA profiling)","displayTitle":"Understanding the role of GLUT2 in dysglycemia associated with Fanconi-Bickel syndrome (NanoString miRNA profiling)","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["In collaboration with Department of Biomedical Sciences, Research Department - Maternal and Child Health Program, Sidra Medicine and Qatar University"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/03/15; operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-15","description":"Since the intronic mutation in SLC2A2 did not influence the activity of GLUT2, we undertook more investigation to understand the underlying molecular mechanisms of dysglycemia in FBS. We ran Nanostring miRNA panel v3b covering ~800 miRNAs in the patient, mother, and aged- and gender-matching healthy controls with no family history of dysglycemia. We noticed a higher degree of correlation between the patient and the gender and age-matched healthy control, rather than between the patient and the mother, suggesting that the miRNA expression profile might be more influenced by the age and gender rather than relatedness (Supplementary Fig. S5). The unsupervised hierarchical clustering revealed 123 miRs expressed specifically in the patient sample (Supplementary Table S2). The function of these miRNAs was interrogated by using Ingenuity Pathway (IPA) analysis software which returned 118 mapped miRs (Fig. 10). Here we report 30 miRNAs with the highest number of counts difference in the patient in comparison to controls (Fig. 11). We found that 14 of them were correlated with T1DM: 10 miRNAs (miR-199a, miR-25-3p, miR-93-5p, miR-19b-3p, miR-107, miR-24-3p. miR-18a-5p, miR-125b-5p, miR-324-5p, miR-331-3p, and hsa-miR-143-3p) were overexpressed in the control as compared to the patient, and 3 miRNAs (miR-144-3p , let-7e-5p, hsa-miR-29a-3p) were significantly overexpressed in the patient in comparison to the control. Molecular networks, including molecules inferred from previous studies, were generated by IPA functional analysis software (Supplementary Fig. S6). The molecular networks were given a score based on the number of molecules represented in the study dataset as compared to the literature. Network 1 (score 33) includes the genes and miRNAs implicated in organismal injury and abnormalities, skeletal and muscular system development and function, and tissue morphology. The miR-144 family integrated into the network 1. Network 2 (score 31) includes insulin and other genes and miRNAs implicated in glomerular injury, inflammatory disease, inflammatory response, and  included miR-29 and let-7 families. These results suggest that dysglycemia in the patient with intronic mutation might be associated with the deregulation of miRNAs involved in insulin production and secretion in beta cells. Overall design: The total RNA extracted from the patient-1 (db-bl-0008), her mother, and age- and gender-matched control-1 were submitted to the Omics Core at Sidra Medicine for Nanostring miRNA profiling. The Nanostring miRNA panel v3b (including ~800 targets) was run on all samples. A total of ~150 ng of total RNA was used as input for each of the samples assessed. Sample preparation, ligation, hybridization, detection, and scanning were performed as per the manufacturer's instructions. After hybridization, samples were transferred to the nCounter Prep Station, where excess probes were removed, and samples were aligned and immobilized on the nCounter cartridge. The cartridge was placed on the nCounter Digital Analyzer for data collection. The nSolver data analysis software (version 4.0 NanoString Technologies) was used for the assessment of QC and the normalization of the raw gene expression counts. We used the recommended default parameters for quality control flagging; briefly, flags were generated if samples did not meet the following QC criteria: imaging threshold with FOV registration of at least 75%, binding density between 0.05 and 2.25, positive control, and ligation control linearity with R2>0.95, positive control limit of detection 0.5fM, positive control > or = 2 standard deviations above the mean of the negative controls. Data are presented as normalized raw counts. Data was imported on ROSALIND (https://app.rosalind.bio/) and Partek Genomic Suite (Partek, St. Louis, Missouri, US) for secondary downstream analysis. Functional gene network analysis was performed using the Ingenuity Pathway Analysis system (QIAGEN, Hilden, Germany), which transforms large data sets into a group of relevant networks containing direct and indirect relationships between genes based on known interactions in the literature.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other"],"accessionIds":["PRJNA816446"],"identifiers":[{"scheme":"BioProject","value":"PRJNA816446"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816446","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna816446:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816446","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna816447","name":"Understanding the role of GLUT2 in dysglycemia associated with Fanconi-Bickel syndrome (RNA-Seq)","displayTitle":"Understanding the role of GLUT2 in dysglycemia associated with Fanconi-Bickel syndrome (RNA-Seq)","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["In collaboration with Department of Biomedical Sciences, Research Department - Maternal and Child Health Program, Sidra Medicine and Qatar University"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/03/15; operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-15","description":"Fanconi–Bickel Syndrome (FBS) is a rare disorder of carbohydrate metabolism that is characterized by the accumulation of glycogen mainly in the liver. It is inherited in an autosomal recessive manner due to mutations in the SLC2A2 gene. SLC2A2 encodes for the glucose transporter GLUT2 and is expressed in tissues that are involved in glucose homeostasis. The molecular mechanisms of dysglycemia in FBS are still not clearly understood. In this study, we report two cases of FBS with classical phenotypes of FBS associated with dysglycemia. Genomic DNA was extracted and analyzed by whole-genome and Sanger sequencing, and patient PBMCs were used for molecular analysis. One patient had an exonic SLC2A2 mutation (c.1093C > T in exon 9, R365X), while the other patient had a novel intronic SLC2A2 mutation (c.613-7T>G). Surprisingly, the exonic mutation resulted in the overexpression of dysfunctional GLUT2, resulting in the dysregulated expression of other glucose transporters. The intronic mutation did not affect the coding sequence of GLUT2, its expression, or glucose transport activity. However, it was associated with the expression of miRNAs correlated with type 1 diabetes mellitus, with a particular significant overexpression of hsa-miR-29a-3p implicated in insulin production and secretion. Our findings suggest that SLC2A2 mutations cause dysglycemia in FBS either by a direct effect on GLUT2 expression and/or activity or, indirectly, by the dysregulated expression of miRNAs implicated in glucose homeostasis. Overall design: RNAseq analysis of PBMCs for Patients and Healthy Controls PBMCs","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA816447"],"identifiers":[{"scheme":"BioProject","value":"PRJNA816447"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816447","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna816447:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA816447","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna817028","name":"What lies behind a fruit crop variety name? A case study of the barni date palm from al-Ula oasis, Saudi Arabia","displayTitle":"What lies behind a fruit crop variety name? A case study of the barni date palm from al-Ula oasis, Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["New York University Abu Dhabi"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/03/17; operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-17","description":"Study the intra-varietal genetic diversity of the date palm variety barni, from al-Ula, Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA817028"],"identifiers":[{"scheme":"BioProject","value":"PRJNA817028"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA817028","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna817028:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA817028","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna819259","name":"Kuwait-CEFAS-AMR Project","displayTitle":"Kuwait-CEFAS-AMR Project","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/03/24; operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-24","description":"This study investigated the resistomes (ARGs, MGEs, integrons and plasmids) persisting in the marine sediments of Kuwait","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA819259"],"identifiers":[{"scheme":"BioProject","value":"PRJNA819259"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA819259","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna819259:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA819259","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna821365","name":"Microbiome of soil associated with Suaeda Monoica from Southern Corniche (Saudi Arabia)","displayTitle":"Microbiome of soil associated with Suaeda Monoica from Southern Corniche (Saudi Arabia)","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Suaeda monoica","leadOrganizations":["Universiti Malaysia Terengganu"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/03/30; operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-30","description":"Microbiome of soil associated with Suaeda Monoica from Southern Corniche (Saudi Arabia)","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA821365"],"identifiers":[{"scheme":"BioProject","value":"PRJNA821365"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA821365","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna821365:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA821365","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna821368","name":"Microbiome of soil associated with Delphinium Glaucum from Southern Corniche (Saudi Arabia)","displayTitle":"Microbiome of soil associated with Delphinium Glaucum from Southern Corniche (Saudi Arabia)","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Delphinium glaucum","leadOrganizations":["Universiti Malaysia Terengganu"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/03/30; operational lifecycle is not asserted.","statusEvidenceDate":"2022-03-30","description":"Microbiome of soil associated with Delphinium Glaucum from Southern Corniche (Saudi Arabia)","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA821368"],"identifiers":[{"scheme":"BioProject","value":"PRJNA821368"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA821368","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna821368:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA821368","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna824249","name":"Enterococcus faecium strain:R9 Genome sequencing and assembly","displayTitle":"Enterococcus faecium strain:R9 Genome sequencing and assembly","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Enterococcus faecium","leadOrganizations":["Kuwait institute for scientific research"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/12/20; 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The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA844067"],"identifiers":[{"scheme":"BioProject","value":"PRJNA844067"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844067","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna844067:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844067","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna844070","name":"Falco peregrinus (Peregrine falcon) genome, bFalPer1","displayTitle":"Falco peregrinus (Peregrine falcon) genome, bFalPer1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Falco peregrinus","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/05/31; operational lifecycle is not asserted.","statusEvidenceDate":"2022-05-31","description":"The peregrine falcon (Falco peregrinus) is a large species of falcons. Its breeding range spans all continents except Antarctica, and is considered the fastest member of the animal kingdom. This sample was procured by Farooq Omar Al-Ajli and used to generate a high-quality reference genome in a collaboration between Qatar Falcon Genome Project (QFGP) and Vertebrate Genomes Project (VGP). The project was coordinated by Farooq Al-Ajli as a part of large conservation study (Qatar Falcon Genome Project), and funded by KATARA Cultural Village and Al-Gannas Qatari Society, Qatar. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) by Farooq Omar Al-Ajli at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA844070"],"identifiers":[{"scheme":"BioProject","value":"PRJNA844070"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844070","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna844070:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844070","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna844077","name":"Falco biarmicus (Lanner falcon) genome, bFalBia1","displayTitle":"Falco biarmicus (Lanner falcon) genome, bFalBia1","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Falco biarmicus","leadOrganizations":["Vertebrate Genomes Project","G10K","Rockefeller Vertebrate Genome Lab"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/05/31; operational lifecycle is not asserted.","statusEvidenceDate":"2022-05-31","description":"The lanner falcon (Falco biarmicus) is a medium-sized species of falcons. Its breeding range includes Africa, Asia and Europe, and it is a member of the hierofalcon complex. This sample was procured by Farooq Omar Al-Ajli and used to generate a high-quality reference genome in a collaboration between Qatar Falcon Genome Project (QFGP) and the Vertebrate Genomes Project (VGP). The project was coordinated by Farooq Al-Ajli as a part of large conservation study (Qatar Falcon Genome Project), and funded by KATARA Cultural Village and Al-Gannas Qatari Society, Qatar. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) by Farooq Omar Al-Ajli at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":[],"accessionIds":["PRJNA844077"],"identifiers":[{"scheme":"BioProject","value":"PRJNA844077"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844077","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna844077:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844077","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna844213","name":"Whole Genome Sequence of Camel Tick (Male) RNA Virus","displayTitle":"Whole Genome Sequence of Camel Tick (Male) RNA Virus","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["United Arab Emirates University"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/06/01; operational lifecycle is not asserted.","statusEvidenceDate":"2022-06-01","description":"Whole Genome Sequence of Camel Tick RNA Virus (Isolate Al Ain) Isolated from Male Ticks Collected from Camels in the Eastern Region of the United Arab Emirates","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA844213"],"identifiers":[{"scheme":"BioProject","value":"PRJNA844213"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844213","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna844213:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844213","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna844222","name":"Homo sapiens Genome sequencing and assembly","displayTitle":"Homo sapiens Genome sequencing and assembly","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Hamad bin khalifa univeristy- qatar foundation"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/06/01; operational lifecycle is not asserted.","statusEvidenceDate":"2022-06-01","description":"Whole Exome Sequencing for affected individuals with various diseases to identify the variant/gene causing diseases","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA844222"],"identifiers":[{"scheme":"BioProject","value":"PRJNA844222"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844222","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna844222:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA844222","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna848288","name":"Whole Exome Sequencing for Hypotrichosis Simplex Patients","displayTitle":"Whole Exome Sequencing for Hypotrichosis Simplex Patients","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Hamad bin khalifa univeristy- qatar foundation"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/06/12; operational lifecycle is not asserted.","statusEvidenceDate":"2022-06-12","description":"Whole Exome Sequencing for patients affected with Hypotrichosis Simplex Patients","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA848288"],"identifiers":[{"scheme":"BioProject","value":"PRJNA848288"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA848288","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna848288:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA848288","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna848948","name":"DNA Sequencing Data of Rhynchophorus Ferrugineus (Red Palm Weevil) Male and Female","displayTitle":"DNA Sequencing Data of Rhynchophorus Ferrugineus (Red Palm Weevil) Male and Female","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Rhynchophorus ferrugineus","leadOrganizations":["King Abdulaziz City for Science and Technology"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/06/14; operational lifecycle is not asserted.","statusEvidenceDate":"2022-06-14","description":"DNA sequencing of male and female red palm weevil (Rhynchophorus Ferrugineus) collected from infested date palm in Saudi Arabia","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA848948"],"identifiers":[{"scheme":"BioProject","value":"PRJNA848948"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA848948","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna848948:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA848948","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna850926","name":"Enterococci from Chicken Meat","displayTitle":"Enterococci from Chicken Meat","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Murdoch University"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/06/20; operational lifecycle is not asserted.","statusEvidenceDate":"2022-06-20","description":"Enterococci Isolated from Retail Chicken Meat in the United Arab Emirates","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA850926"],"identifiers":[{"scheme":"BioProject","value":"PRJNA850926"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA850926","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna850926:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA850926","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna853585","name":"Molecular Characterization of Leishmania Species Among Patients with Cutaneous Leishmaniasis in Asir Province of Saudi Arabia","displayTitle":"Molecular Characterization of Leishmania Species Among Patients with Cutaneous Leishmaniasis in Asir Province of Saudi Arabia","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["King Khalid University"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/06/28; operational lifecycle is not asserted.","statusEvidenceDate":"2022-06-28","description":"The molecular characterization of Leishmania strains using a large number of patients in the Asir region has not been the subject of a scientific enquiry since 2014. Molecular characterization is essential in controlling cutaneous leishmania in Asir because the anthroponotic cycle is different from the zoonotic cycle. If L. major is present in the Asir region, the vector control unit must change the strategy for controlling Leishmaniasis.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Other"],"accessionIds":["PRJNA853585"],"identifiers":[{"scheme":"BioProject","value":"PRJNA853585"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA853585","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna853585:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA853585","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna857586","name":"Geographic origin and Wolbachia infection influence Aedes aegypti stress tolerance","displayTitle":"Geographic origin and Wolbachia infection influence Aedes aegypti stress tolerance","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["University of Cambridge"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/07/11; operational lifecycle is not asserted.","statusEvidenceDate":"2022-07-11","description":"Aedes aegypti mosquitoes carrying self-spreading, virus-blocking Wolbachia bacteria are being deployed to suppress dengue transmission. Aedes aegypti are widespread across tropical and subtropical regions but their adaptation to local climate conditions is poorly understood. Wolbachia-infected Ae. aegypti are sensitive to environmental conditions, likely contributing to the variable Wolbachia establishment success across release zones in different climates. With releases of Wolbachia-infected Ae. aegypti taking place in the hot and arid city of Jeddah, Saudi Arabia, it is important to understand the interaction between Wolbachia infections and genetic background within this local context. We introduced two Wolbachia transinfections (wAlbB and wMelM) into Ae. aegypti laboratory populations originating from Cairns, Australia and Jeddah, Saudi Arabia. Both wAlbB and wMelM showed complete maternal transmission and reduced infection and dissemination of dengue virus (DENV2) in Saudi Arabian Ae. aegypti, demonstrating their suitability for field release. We then assessed the contributions of genetic background and Wolbachia infection to desiccation, storage and heat stress tolerance. Saudi Arabian Ae. aegypti had lower egg viability but higher adult desiccation tolerance than Australian mosquitoes, with a slower rate of water loss in males, likely reflecting adaptation to local conditions. Wolbachia infection reduced adult heat tolerance in one background and egg viability in both backgrounds, particularly when eggs were exposed to high temperatures or stored before hatching. We also observed differential thermal stability between Wolbachia strains and severe fitness costs of wAlbB infection in females hatching from stored eggs. Wolbachia effects were similar across mosquito backgrounds, but the background effects themselves are expected to influence Wolbachia invasion dynamics, reinforcing the need to use local genotypes for mosquito release programs.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA857586"],"identifiers":[{"scheme":"BioProject","value":"PRJNA857586"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA857586","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna857586:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA857586","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna859028","name":"Duck data alignments","displayTitle":"Duck data alignments","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["UAE University"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/07/15; operational lifecycle is not asserted.","statusEvidenceDate":"2022-07-15","description":"This data describes the first outbreak of herpesvirus hepatitis in adult ducks. 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operational lifecycle is not asserted.","statusEvidenceDate":"2022-11-09","description":"Description of bacterial and protist communities along the water column and the environmental drivers of special sites in the south-eastern Red Sea, Saudi Arabia.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA899789"],"identifiers":[{"scheme":"BioProject","value":"PRJNA899789"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA899789","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna899789:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA899789","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna902692","name":"Whole transcriptome Sequencing of Copepod- Parvocalanus crassirostris","displayTitle":"Whole transcriptome Sequencing of Copepod- Parvocalanus crassirostris","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Biodiversity, conservation and evolution","researchDomain":"Biodiversity, conservation and evolution","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/11/17; operational lifecycle is not asserted.","statusEvidenceDate":"2022-11-17","description":"Differential gene expression of marine organisms under the influence of ocean acidification and ocean warming","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Genome"],"accessionIds":["PRJNA902692"],"identifiers":[{"scheme":"BioProject","value":"PRJNA902692"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA902692","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna902692:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA902692","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna908652","name":"Salmonella enterica Serovar Rissen Sequence Type 8877 Genome sequencing and assembly","displayTitle":"Salmonella enterica Serovar Rissen Sequence Type 8877 Genome sequencing and assembly","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Other genomic research","researchDomain":"Other genomic research","organismPopulation":"Salmonella enterica subsp. enterica serovar Rissen","leadOrganizations":["United Arab Emirates"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/12/12; operational lifecycle is not asserted.","statusEvidenceDate":"2022-12-12","description":"Whole-genome Sequence of a Salmonella enterica Serovar Rissen Sequence Type 8877 Isolated from Cracked Table Egg in Sudan","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Genome sequencing and assembly","Sequencing","Genome"],"accessionIds":["PRJNA908652"],"identifiers":[{"scheme":"BioProject","value":"PRJNA908652"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA908652","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna908652:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA908652","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna908773","name":"Individuals infected with SARS-CoV-2 vary greatly in their symptomatology and disease progression, likely as a result of numerous genetic, biological and environmental factors and their complex interactions.","displayTitle":"Individuals infected with SARS-CoV-2 vary greatly in their symptomatology and disease progression, likely as a result of numerous genetic, biological and environmental factors…","aliases":[],"countries":["United Arab Emirates"],"regionLabel":"United Arab Emirates","geographicScope":"United Arab Emirates connection indexed in BioProject metadata","projectType":"Repository submission series","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Homo sapiens","leadOrganizations":["Division of Science and Mathematics, Biology, NYUAD"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/12/05; operational lifecycle is not asserted.","statusEvidenceDate":"2022-12-05","description":"Individuals infected with SARS-CoV-2 vary greatly in their symptomatology and disease progression, likely as a result of numerous genetic, biological and environmental factors and their complex interactions. Meanwhile, the potential roles of microRNAs (miRNAs) in SARS-CoV-2 infection have not been fully described. MiRNAs have emerged as key post-transcriptional regulators of gene expression, and their dysregulation can be indicative of aberrant immune function. In this study, we characterize the potential roles of mIRNAs in early COVID-19 disease progression.  We studied a diverse cohort of 259 patients admitted to hospitals in Abu Dhabi, United Arab Emirates to understand the clinical and biological factors associated with ICU admission during COVID-19 treatment, integrating electronic health records (EHR), global miRNA and RNA expression, and genotyping data. Using EHR, we identified 26 factors correlated with ICU admission, including 8 blood phenotypes such as neutrophil-to-lymphocyte ratio,  Interleukin-6, and C-reactive protein levels. Using genome-wide miRNA expression data for a subset of 96 individuals from Southeast Asia and the Middle East and North Africa, we identified 27 miRNAs significantly associated with ICU admission (p < 0.01), and 97 miRNAs associated with at least one of the 8 blood phenotypes. [cross-cor] Integrating expression data for 632 miRNAs and genotyping data for ~260,000 SNPs, we identified 168 significant cis-expression quantitative trait loci (cis-eQTLs), of which 59 were associated with either ICU admission or one of the 8 blood phentoypes. Overall, our findings characterize the miRNA architecture of blood phenotypes during the early stages of COVID-19 infection, identify miRNAs associated with ICU admission and therefore COVID-19 disease severity, and suggest a potential genetic control of miRNA expression during early COVID-19 disease progression. Overall design: Blood samples from patients with SARS-CoV2 infection were collected into tempus tubes at time of diagnosis (i.e. 1st timepoint). Total RNA was extracted from whole blood samples of the 96 patients where miRNA-seq was performed, and mRNA sequencing was performed on the same samples.","scaleSummary":"2 BioProject accessions grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA908773","PRJNA908778"],"identifiers":[{"scheme":"BioProject","value":"PRJNA908773"},{"scheme":"BioProject","value":"PRJNA908778"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA908773","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna908773:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA908773","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"},{"id":"public:ncbi-prjna908773:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA908778","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"ncbi-prjna909330","name":"Identification of a transcriptomic signature of X chromosome overdosage in  Saudi Klinefelter syndrome iPSCs.","displayTitle":"Identification of a transcriptomic signature of X chromosome overdosage in  Saudi Klinefelter syndrome iPSCs.","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Homo sapiens","leadOrganizations":["Stem cells and diseases, STEMD, Biological and Environmental Science and Engineering Division, BESE, King Abdullah University of Science and Technology, KAUST"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/12/06; operational lifecycle is not asserted.","statusEvidenceDate":"2022-12-06","description":"Klinefelter syndrome (KS) is the most prevalent aneuploidy in males and is characterized by an extra copy of the X chromosome,while the non-mosaic form of KS with 47,XXY  karyotype is the most frequent (80-90%), less common non-disjunction events during the early mitotic division of the zygote result in mosaic forms of KS (47,XXY/46,XY). Here, using a paradigmatic cohort of KS-inducible pluripotent stem cells (iPSCs) carrying 47,XXY karyotypes we present the first iPSC-based disease-modeling study performed on KS patients from Saudi Arabia. We profiled the transcriptome of these Saudi KS-iPSCs, virtually characterized by subduedcgenetic backgrounds. Moreover, we performed a comparative transcriptomic analysis to assess the aberrant gene expression profile due to X dosage imbalance in four Saudi and five European and North American 47,XXY patients-derived iPSCs from our previously published study on KS and high-grade sex chromosome aneuploidies (SCAs). We identified a transcriptomic signature including ten PAR1 genes and thirteen non-PAR escape genes consistently upregulated in KS compared to 46,XY controls in both groups, as well as 193 consistenty disregulated autosomal genes. Our results indicate that the global transcriptional impact of X chromosome overdosage in KS is largely attributable to X-linked genes escaping X inactivation, regardless of the geographical area of origin, ethnicity, and genetic background. Overall design: Bulk transcriptomic profiles of iPSC derived from 4 Klinefelter syndrome patients and 1 control.  For each patien three independent clones have been generated and for each clone three independent RNA-Seq libraries have been processed.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Transcriptome or Gene expression","Sequencing","Transcriptome"],"accessionIds":["PRJNA909330"],"identifiers":[{"scheme":"BioProject","value":"PRJNA909330"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA909330","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna909330:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA909330","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna910671","name":"FM120K","displayTitle":"FM120K","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/12/10; operational lifecycle is not asserted.","statusEvidenceDate":"2022-12-10","description":"Shotgun metagenomc sequencing of bacterial and archaeal communities in Kuwaiti waters of the Northwest Arabian Gulf","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA910671"],"identifiers":[{"scheme":"BioProject","value":"PRJNA910671"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA910671","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna910671:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA910671","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna910929","name":"Microbiome of Hatiba Hydrothermal Vent Fields: Metabarcoding","displayTitle":"Microbiome of Hatiba Hydrothermal Vent Fields: Metabarcoding","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["King Abdullah University of Science and Technology (KAUST)"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/12/11; operational lifecycle is not asserted.","statusEvidenceDate":"2022-12-11","description":"This study aims to investigate the microbial diversity and functional potentials of the Hatiba Red Sea hydrothermal vents. The samples are collected from sediments, microbial mats, and crusts at hydrothermal vents in Hatiba, Red Sea, Saudi Arabia. The samples are taken from the Red Sea low-temperature hydrothermal vent fields: Farwah Safraa Reidges, Majarrah, Bajaah, Beacon, and Kabir.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA910929"],"identifiers":[{"scheme":"BioProject","value":"PRJNA910929"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA910929","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna910929:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA910929","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna915583","name":"Surface soil microbial community near tertiary treated wastewater","displayTitle":"Surface soil microbial community near tertiary treated wastewater","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Jazan University","BGI (Shenzhen, China)"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/12/24; operational lifecycle is not asserted.","statusEvidenceDate":"2022-12-24","description":"Impacts of long-term disposal of tertiary treated wastewater (TWW) into Wadi Uranah (a dry valley) from the wastewater treatment plant (WWTP) of Makkah city, Saudi Arabia, on native surface soil microbial community composition using 16S rRNA gene amplicon sequencing.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA915583"],"identifiers":[{"scheme":"BioProject","value":"PRJNA915583"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA915583","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna915583:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA915583","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna915753","name":"Fuel-synthesis wastewater treatment and PHA production using purple non-sulfur bacteria: Effect of nitrogen and phosphorus concentrations","displayTitle":"Fuel-synthesis wastewater treatment and PHA production using purple non-sulfur bacteria: Effect of nitrogen and phosphorus concentrations","aliases":[],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Carnegie Mellon University Qatar"],"partnerOrganizations":[],"startYear":2022,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2022/12/25; operational lifecycle is not asserted.","statusEvidenceDate":"2022-12-25","description":"Purple non-sulphur bacteria are abundant in nature and participate in a wide variety of environmental processes. They are photosynthetic organisms that utilize organic substrates and have the potential for the production of polyhydroxyalkanoates (PHAs). This study focuses on the application of these organisms for PHA production during simultaneous treatment of fuel synthesis water, an organic rich byproduct of the Fischer-Tropsch process.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA915753"],"identifiers":[{"scheme":"BioProject","value":"PRJNA915753"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA915753","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna915753:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA915753","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna919024","name":"Microbial eukaryote, bacterial and archaeal diversity of serpentinized fluid sediments (Samail Ophiolite, Oman)","displayTitle":"Microbial eukaryote, bacterial and archaeal diversity of serpentinized fluid sediments (Samail Ophiolite, Oman)","aliases":[],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"Oman connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Environmental and microbial genomics","researchDomain":"Environmental and microbial genomics","organismPopulation":"Not stated","leadOrganizations":["Arizona State University"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/01/06; operational lifecycle is not asserted.","statusEvidenceDate":"2023-01-06","description":"The aim of the project is to investigate microbial eukaryote diversity in sediments of serpentinized fluid with a focus on protist diversity. Samples were collected from systems that range in pH (~8 to > 11). This project includes an assessment of archaeal and bacterial diversity to evaluate potential correlations between microbial eukaryote and prokaryote diversity. 18S and 16S rRNA gene amplicon sequencing was conducted with the the 2 x 250 MiSeq Illumina platform.","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA919024"],"identifiers":[{"scheme":"BioProject","value":"PRJNA919024"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA919024","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna919024:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA919024","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna926248","name":"tomato yellow leaf curl virus isolates in commercial tomato crops in Kuwait","displayTitle":"tomato yellow leaf curl virus isolates in commercial tomato crops in Kuwait","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"Agriculture, food and veterinary genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait institute for scientific research"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/01/22; operational lifecycle is not asserted.","statusEvidenceDate":"2023-01-22","description":"Whitefly-transmitted tomato yellow leaf curl virus (TYLCV) is a significant virus infecting tomato plants in Kuwait. Here we report the sequence of some isolated viruses","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA926248"],"identifiers":[{"scheme":"BioProject","value":"PRJNA926248"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA926248","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna926248:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA926248","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna928214","name":"Microbiome shift of Camel Milk","displayTitle":"Microbiome shift of Camel Milk","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Pathogen genomics and infectious disease","organismPopulation":"Not stated","leadOrganizations":["Kuwait Institute for Scientific Research"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/01/26; operational lifecycle is not asserted.","statusEvidenceDate":"2023-01-26","description":"Sequencing of the 16S rRNA gene of the DNA extracted from raw camel milk collected from Kuwait and treated with antimicrobials performed on Illumina HiSeq 2500","scaleSummary":"1 BioProject accession grouped by matching submitter, date, data type and narrative.","dataTypes":["Raw sequence reads","Sequencing","Genome"],"accessionIds":["PRJNA928214"],"identifiers":[{"scheme":"BioProject","value":"PRJNA928214"}],"dataAccess":"Public repository metadata with linked data where supplied by the submitter","primarySourceUrl":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA928214","inclusionBasis":"Exact country-name match in authoritative NCBI BioProject metadata; repeated submissions are grouped into one Atlas series.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"repository_discovery","recordClass":"repository_series","relatedRecordIds":[],"notes":"Repository verification confirms the accession and regional connection, not whether the broader research programme remains active.","sources":[{"id":"public:ncbi-prjna928214:s01","type":"primary record source","rank":1,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA928214","evidenceGrade":"A","sourceKind":"repository_discovery","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"ncbi-prjna928743","name":"mtDNA sequencing and analysis reveal association of variants with psoriasis arthritis","displayTitle":"mtDNA sequencing and analysis reveal association of variants with psoriasis arthritis","aliases":[],"countries":["Kuwait"],"regionLabel":"Kuwait","geographicScope":"Kuwait connection indexed in BioProject metadata","projectType":"Repository project","domainGroup":"Human health and population genomics","researchDomain":"Human health and population genomics","organismPopulation":"Not stated","leadOrganizations":["Kuwait University"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"repository_recorded","lifecycleGroup":"Repository record","statusBasis":"Registered in NCBI BioProject on 2023/01/27; 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public project metadata only","primarySourceUrl":"https://mawarid.gov.om/initiatives/tajmee","inclusionBasis":"Named project or platform in the current official Mawarid national genetic-resources portfolio.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Broader biodiversity resource rather than sequence data; included because it is an official discovery/documentation layer for the national genetic-resources programme.","sources":[{"id":"public:om-tajmee-biodiversity-app:s01","type":"primary record source","rank":1,"url":"https://mawarid.gov.om/initiatives/tajmee","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"om-tb-genomic-surveillance","name":"Oman Tuberculosis Genomic Surveillance Studies","displayTitle":"Oman Tuberculosis Genomic Surveillance Studies","aliases":["CPHL-NTRL-Oman MTB Project 2021"],"countries":["Oman"],"regionLabel":"Oman","geographicScope":"National TB cases and archived isolates","projectType":"Pathogen genomic-surveillance programme","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Tuberculosis transmission and drug resistance","organismPopulation":"Mycobacterium tuberculosis isolates from Oman","leadOrganizations":["Oman Ministry of Health Central Public Health Laboratories"],"partnerOrganizations":[],"startYear":2021,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"A 2023 national WGS study has a public BioProject, and a later expanded analysis covers isolates from 2008-2022; 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later continuity unclear","lifecycleGroup":"Completed / retained","statusBasis":"WCM-Q reported the project initiation and genome mapping/publishing in 2012, with plans for 50 additional animals; 2026 official-news coverage still cites the Oryx Genome Project among Qatar initiatives without documenting continuity.","statusEvidenceDate":"2026-05-22","description":"Reference sequencing and planned population extension intended to guide genetic diversity management and breeding of Qatar's national animal.","scaleSummary":"One initial reference genome completed in about four months; historical plan to sequence 50 additional animals, but completion of that phase is unverified.","dataTypes":["animal whole-genome sequencing","reference assembly","planned population genomes","breeding data"],"accessionIds":[],"identifiers":[],"dataAccess":"Publication/reference information; no confirmed public 50-animal dataset.","primarySourceUrl":"https://news.weill.cornell.edu/news/2012/11/weill-cornell-medical-college-in-qatar-research-will-help-ensure-survival-of-the-oryx-qatars-nationa","inclusionBasis":"Named national-species reference project with a conservation and planned multi-animal phase.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The initial reference overlaps the 2013-2016 Comparative Animal Genomics in Qatar grant. Later revival/continuity is possible but not documented well enough to label active.","sources":[{"id":"public:qa-arabian-oryx-genome-project:s01","type":"primary record source","rank":1,"url":"https://news.weill.cornell.edu/news/2012/11/weill-cornell-medical-college-in-qatar-research-will-help-ensure-survival-of-the-oryx-qatars-nationa","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-arabian-oryx-genome-project:s02","type":"additional record source","rank":2,"url":"https://thepeninsulaqatar.com/article/27/01/2013/decoding-genome-sequence-of-arabian-oryx","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-arabian-oryx-genome-project:s03","type":"additional record source","rank":3,"url":"https://www.gulf-times.com/article/725990/qatar/international-day-for-biological-diversity-qatar-launches-distinguished-initiatives-to-maintain-ecological-balance","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"qa-baraka-autism-study","name":"BARAKA-Qatar Study","displayTitle":"BARAKA-Qatar Study","aliases":["Building a Resource for the Advancement of Knowledge of Autism in Qatar","BARAKA Study"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National Qatar autism-family cohort with global MSSNG data federation","projectType":"family-based autism biorepository and whole-genome cohort","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"neurodevelopmental disease genomics and precision medicine","organismPopulation":"children and adults with autism spectrum disorder and their family members, predominantly of Arab ancestry","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":["The Hospital for Sick Children","Autism Speaks MSSNG","Qatar Foundation","Google Cloud"],"startYear":2018,"endYear":null,"lifecycleStatus":"active and enrolling","lifecycleGroup":"Active / operational","statusBasis":"Qatar Foundation describes the program as a current public research offering, and Sidra reported continued family enrollment and cohort expansion in April 2024.","statusEvidenceDate":"2026-08-15","description":"Qatar's national autism research resource combines deep clinical and environmental characterization with family whole-genome sequencing and a longitudinal biorepository to discover genetic architecture and support personalized care.","scaleSummary":"The first published release covered 100 families and 372 individuals; by 2024 approximately 350 families and 1,500 participants had enrolled, with Sidra reporting whole-genome sequencing across more than 350 families.","dataTypes":["family whole-genome sequencing","clinical phenotypes","electronic health records","blood","plasma","cell lines","RNA","saliva","microbiome samples","environmental questionnaires"],"accessionIds":[],"identifiers":[],"dataAccess":"Genomic data are contributed to the controlled-access MSSNG research platform; local biospecimens and linked clinical data require Sidra ethics and collaboration approval.","primarySourceUrl":"https://www.qf.org.qa/community/autism/the-baraka-study","inclusionBasis":"National, longitudinal, family-based genomics cohort and biorepository with hundreds of families and a controlled international data resource.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The 2023 paper describes the first 100-family data release, whereas later institutional sources report the much larger enrolled/sequenced cohort. Do not add these counts. Possible participant overlap with the separate QBRI-QGP autism trio cohort has not been publicly resolved.","sources":[{"id":"public:qa-baraka-autism-study:s01","type":"primary record source","rank":1,"url":"https://www.qf.org.qa/community/autism/the-baraka-study","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-baraka-autism-study:s02","type":"additional record source","rank":2,"url":"https://link.springer.com/article/10.1186/s13073-023-01228-w","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-baraka-autism-study:s03","type":"additional record source","rank":3,"url":"https://research.mss.ng/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-baraka-autism-study:s04","type":"additional record source","rank":4,"url":"https://www.sidra.org/media/news/2023/sidra-medicine-pmfg-2023-day-two-highlights/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-baraka-autism-study:s05","type":"additional record source","rank":5,"url":"https://www.sidra.org/ar/media/news/2024/first-arab-middle-eastern-genetics-research-autism-going-global/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-baraka-autism-study:s06","type":"additional record source","rank":6,"url":"https://reports.qf.org.qa/2024-year-in-review/april","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":6},{"id":"qa-cf-omics","name":"Cystic Fibrosis CF Omics Study","displayTitle":"Cystic Fibrosis CF Omics Study","aliases":["CF Omics"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar/Gulf-region nested cohort","projectType":"disease multi-omics cohort","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"cystic fibrosis genomics and infectious-disease resilience","organismPopulation":"People with clinically diagnosed cystic fibrosis in the Gulf region","leadOrganizations":["Qatar Precision Health Institute","Hamad Medical Corporation"],"partnerOrganizations":[],"startYear":null,"endYear":null,"lifecycleStatus":"active or recruiting","lifecycleGroup":"Active / operational","statusBasis":"QPHI's current disease-studies page lists the nested study and recruitment through Hamad General Hospital pulmonary and chest clinics.","statusEvidenceDate":"2026-08-15","description":"Nested omics study seeking host factors associated with resistance to SARS-CoV-2 among Gulf cystic-fibrosis patients.","scaleSummary":"No public target or enrollment count identified.","dataTypes":["omics","genetic data","clinical cystic-fibrosis phenotypes","SARS-CoV-2 outcomes"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled QPHI/HMC access.","primarySourceUrl":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","inclusionBasis":"Named Gulf disease multi-omics study recruiting from a national specialty service.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Likely nested in the Disease Genomics Database; sample scale and specific omics are not listed publicly.","sources":[{"id":"public:qa-cf-omics:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-comparative-animal-genomics","name":"Comparative Animal Genomics in Qatar","displayTitle":"Comparative Animal Genomics in Qatar","aliases":["NPRP 6-1303-4-023","Comparative Genomics of Desert Mammals"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar-centered international comparative-genomics collaboration; Arabian-horse sampling extended to 12 countries","projectType":"multi-species comparative and population genomics grant","domainGroup":"Human health and population genomics","researchDomain":"animal genomics, desert adaptation, conservation and livestock genetics","organismPopulation":"Arabian horse, dromedary camel and Arabian oryx","leadOrganizations":["University of Florida","Cornell University Baker Institute for Animal Health","Weill Cornell Medicine-Qatar"],"partnerOrganizations":["Qatar National Research Fund","Qatar Foundation","Equine Veterinary Medical Center at Al Shaqab","University of Kentucky","University of Tehran","University of Agriculture in Krakow","University of Veterinary Medicine Vienna","Hong Kong Jockey Club"],"startYear":2013,"endYear":2016,"lifecycleStatus":"grant completed; major outputs and datasets published through 2020","lifecycleGroup":"Completed / retained","statusBasis":"The QNRF-funded three-year project was awarded in 2013; Cornell records a final subaward period ending October 2016, and the Arabian-horse population dataset and paper were released in 2020.","statusEvidenceDate":"2020-07-13","description":"A comparative-genomics program to build genome resources for three culturally and biologically important desert mammals and identify loci involved in heat tolerance, water conservation, metabolism, olfaction and immunity.","scaleSummary":"Three target species and an approximately USD 1 million, three-year award; its largest documented population output analyzed 378 Arabian horses from 12 countries, with array genotypes and whole-genome resequencing deposited publicly.","dataTypes":["whole-genome sequencing","whole-genome resequencing","SNP genotyping arrays","reference genomes","comparative genomics","phenotype and pedigree metadata"],"accessionIds":["NPRP 6-1303-4-023","PRJEB33818","Mendeley Data mkk5khxrbp.3"],"identifiers":[{"scheme":"Other","value":"NPRP 6-1303-4-023"},{"scheme":"BioProject","value":"PRJEB33818"},{"scheme":"Other","value":"Mendeley Data mkk5khxrbp.3"}],"dataAccess":"Arabian-horse raw sequencing is public in ENA and genotype data are public in Mendeley Data; access conditions for camel and oryx components vary by output.","primarySourceUrl":"https://www.vet.cornell.edu/departments-centers-and-institutes/baker-institute/research/comparative-animal-genomics-qatar","inclusionBasis":"Named, funded, multi-species genomics program with reusable reference resources and a large public population-genomics dataset.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"This umbrella grant overlaps the separately cataloged Arabian Oryx Genome Project and contributed to later Arabian-horse and camel papers; those are outputs, not separate duplicates of the umbrella. The formal grant ended in 2016 even though publication continued.","sources":[{"id":"public:qa-comparative-animal-genomics:s01","type":"primary record source","rank":1,"url":"https://www.vet.cornell.edu/departments-centers-and-institutes/baker-institute/research/comparative-animal-genomics-qatar","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-comparative-animal-genomics:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41598-020-66232-1","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-comparative-animal-genomics:s03","type":"additional record source","rank":3,"url":"https://www.ebi.ac.uk/ena/browser/view/PRJEB33818","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-comparative-animal-genomics:s04","type":"additional record source","rank":4,"url":"https://www.vet.cornell.edu/research/awards/201512/comparative-animal-genomics-qatar","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-comparative-animal-genomics:s05","type":"additional record source","rank":5,"url":"https://ufgi.ufl.edu/finding-answers-in-the-desert/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-comparative-animal-genomics:s06","type":"additional record source","rank":6,"url":"https://data.mendeley.com/datasets/mkk5khxrbp/3","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":6},{"id":"qa-congenital-malformations-program","name":"Congenital Malformations Translational Research Program","displayTitle":"Congenital Malformations Translational Research Program","aliases":["Congenital Malformations Program"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar national maternal-child clinical catchment","projectType":"birth-defects registry, biobank, and genomics program","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"developmental genetics and congenital anomalies","organismPopulation":"Children and families affected by orofacial clefts, congenital heart defects, spina bifida, hypospadias, and related anomalies","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":["Qatar clinical and research collaborators"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Sidra's current translational-program page describes linked registries, biospecimen collections, clinical cohorts, and genomic investigation.","statusEvidenceDate":"2026-08-15","description":"National program building disease-specific registries and family biospecimen cohorts to discover genetic and environmental causes of major congenital anomalies.","scaleSummary":"Multiple Gold Cohorts across major malformation types; no consolidated enrollment count is public.","dataTypes":["genomics","family data","clinical registries","biospecimens","developmental phenotypes"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled institutional research access.","primarySourceUrl":"https://www.sidra.org/research/divisions/translational-research-programs/congenital-malformations-program/","inclusionBasis":"Reusable, multi-condition congenital-anomaly registries and biospecimen cohorts with a genomic mandate.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"No public launch year or enrollment number identified.","sources":[{"id":"public:qa-congenital-malformations-program:s01","type":"primary record source","rank":1,"url":"https://www.sidra.org/research/divisions/translational-research-programs/congenital-malformations-program/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-covid19-biorepository","name":"Qatar COVID-19 Biorepository","displayTitle":"Qatar COVID-19 Biorepository","aliases":["COVID-19 National Biorepository"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National","projectType":"infectious-disease biorepository and cohort","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"COVID-19 host genomics, immunology, and public health","organismPopulation":"People with laboratory-confirmed COVID-19 and COVID-19 vaccine recipients","leadOrganizations":["Qatar Biobank","Qatar Precision Health Institute"],"partnerOrganizations":["Ministry of Public Health","Hamad Medical Corporation","Primary Health Care Corporation"],"startYear":2020,"endYear":null,"lifecycleStatus":"closed to new recruitment; repository retained","lifecycleGroup":"Active / operational","statusBasis":"QPHI's current page states that the national study was established at the start of the pandemic and is not currently admitting new participants.","statusEvidenceDate":"2026-08-15","description":"Two-arm national biorepository collecting samples and health information for disease-course and vaccine research.","scaleSummary":"Target 6,000 participants across disease and vaccination arms; final enrollment not publicly confirmed on the current page.","dataTypes":["biospecimens","clinical data","host genomic data","immune data","vaccine data"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled research access; registry metadata are public.","primarySourceUrl":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","inclusionBasis":"National reusable pandemic biorepository with a defined target and explicit disease/vaccine arms.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Participant resource may support genomic studies but public pages do not quantify how many received WGS.","sources":[{"id":"public:qa-covid19-biorepository:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-covid19-biorepository:s02","type":"additional record source","rank":2,"url":"https://vbd.finddx.org/Profile/Biobank/GBR-1-4","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"qa-covid19-wastewater-monitoring","name":"Qatar National Wastewater COVID-19 Monitoring Project","displayTitle":"Qatar National Wastewater COVID-19 Monitoring Project","aliases":["COVID-19 Wastewater Surveillance Project","National Wastewater Surveillance Pilot"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Five wastewater treatment plants covering most of Qatar's population; later World Cup surveillance","projectType":"wastewater pathogen surveillance","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"public-health genomics and environmental surveillance","organismPopulation":"SARS-CoV-2 and other enteric/respiratory viruses in wastewater","leadOrganizations":["Qatar Environment and Energy Research Institute","Hamad Bin Khalifa University"],"partnerOrganizations":["Public Works Authority Ashghal","Weill Cornell Medicine-Qatar","Qatar Biomedical Research Institute","Hamad Medical Corporation","Ministry of Public Health"],"startYear":2020,"endYear":2023,"lifecycleStatus":"completed pandemic/World Cup phases","lifecycleGroup":"Completed / retained","statusBasis":"The national pilot began in September 2020; publications document genomic analysis in 2021 and expanded surveillance around the 2022 FIFA World Cup through January 2023.","statusEvidenceDate":"2023-01-01","description":"Population-level wastewater program using molecular testing and viral sequencing to estimate infection trends and identify variants and other pathogens.","scaleSummary":"Five major treatment plants; early genomic analysis of 30 samples from March-April 2021 identified Alpha and Beta; World Cup phase ran October 2022-January 2023.","dataTypes":["wastewater samples","RT-qPCR","viral genome sequencing","variant analysis","epidemiological modeling"],"accessionIds":[],"identifiers":[],"dataAccess":"Aggregate publications; no unified public sequence repository identified.","primarySourceUrl":"https://research.hbku.edu.qa/projects/30","inclusionBasis":"Named national multi-site pathogen-surveillance project with sequencing and multiple deployment phases.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Historical predecessor to the 2025-2027 WATCH One Health platform.","sources":[{"id":"public:qa-covid19-wastewater-monitoring:s01","type":"primary record source","rank":1,"url":"https://research.hbku.edu.qa/projects/30","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-covid19-wastewater-monitoring:s02","type":"additional record source","rank":2,"url":"https://pubmed.ncbi.nlm.nih.gov/35761926/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-covid19-wastewater-monitoring:s03","type":"additional record source","rank":3,"url":"https://www.hbku.edu.qa/en/news/qatar-stakeholders-collaborative","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-covid19-wastewater-monitoring:s04","type":"additional record source","rank":4,"url":"https://elmi.hbku.edu.qa/en/publications/leveraging-wastewater-surveillance-for-managing-the-spread-of-sar","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":4},{"id":"qa-danna-cohort","name":"DANNA Cohort","displayTitle":"DANNA Cohort","aliases":["Determination of Autoantibody Architecture Blended with Novel Genetic Elements of Autoimmunity"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar with MENA Arab representation","projectType":"type 1 diabetes genomic registry and family cohort","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"autoimmunity, diabetes genomics, and risk prediction","organismPopulation":"Children and adults with type 1 diabetes and their family members","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":["Hamad Medical Corporation"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Sidra described DANNA on 22 July 2025 as an ongoing foundational registry supporting an upcoming national type 1 diabetes screening program.","statusEvidenceDate":"2025-07-22","description":"Population-based type 1 diabetes registry combining autoantibodies, whole genomes, family recruitment, and longitudinal clinical records to build a MENA-specific genetic risk score.","scaleSummary":"All participants receive whole-genome sequencing and linkage to comprehensive electronic health records; 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no public participant dataset.","primarySourceUrl":"https://hamad.qa/EN/news/2024/March/Pages/For-a-better-health-of-Qatar-newborns-HMC-Rare-Disease-Center-launches.aspx","inclusionBasis":"Named national pilot deploying a population-specific genomic platform in newborn screening.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from Sidra/BeginNGS NOOR-QATAR, which uses genome sequencing rather than the Q-Chip microarray.","sources":[{"id":"public:qa-hmc-qchip-newborn-pilot:s01","type":"primary record source","rank":1,"url":"https://hamad.qa/EN/news/2024/March/Pages/For-a-better-health-of-Qatar-newborns-HMC-Rare-Disease-Center-launches.aspx","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-immune-dysregulation-program","name":"Immune Dysregulation Translational Research Program","displayTitle":"Immune Dysregulation Translational Research Program","aliases":["IDR Program"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar and MENA clinical-research population","projectType":"rare-disease and immune-genomics program","domainGroup":"Human health and population genomics","researchDomain":"inborn errors of immunity, autoimmunity, inflammation, and multi-omics","organismPopulation":"Patients with monogenic immune dysregulation and immune-mediated gastrointestinal disorders","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":["Qatar and regional clinical collaborators"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Sidra's current program page describes systematic recruitment, standardized data/biospecimen collection, biobanks, registries, and two Gold Cohorts.","statusEvidenceDate":"2026-08-15","description":"Translational program integrating genomics, immunophenotyping, functional biology, and clinical care to diagnose and stratify rare and complex immune disorders.","scaleSummary":"Two priority Gold Cohorts: monogenic immune-dysregulation disorders and inflammatory bowel/immune-mediated gastrointestinal disease; participant count not public.","dataTypes":["genomic sequencing","multi-omics","immunophenotyping","functional assays","biobank samples","clinical registry","longitudinal data"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled Sidra collaboration; no unified public dataset.","primarySourceUrl":"https://www.sidra.org/research/divisions/translational-research-programs/the-immune-dysregulation-program/","inclusionBasis":"Named program with standardized national rare-disease cohorts, biobanking, and multi-omic profiling.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"No consolidated launch year or enrollment total is stated.","sources":[{"id":"public:qa-immune-dysregulation-program:s01","type":"primary record source","rank":1,"url":"https://www.sidra.org/research/divisions/translational-research-programs/the-immune-dysregulation-program/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-katara-biodiversity-genomes","name":"Katara Biodiversity Genomes Programme","displayTitle":"Katara Biodiversity Genomes Programme","aliases":["KBGP","Qatar Biodiversity Genomes Project","Katara Programme for Biodiversity Genome"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar with regional conservation-genomics collaborations","projectType":"multi-species biodiversity genomics program","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"conservation genomics, reference genomes, and breeding management","organismPopulation":"Culturally and environmentally important Qatar species, including falcons, Arabian horse, dromedary camel, and MacQueen's bustard","leadOrganizations":["Cultural Village Foundation - Katara","Al Gannas Qatari Society"],"partnerOrganizations":["Ministry of Environment and Climate Change","Sidra Medicine","Souq Waqif Falcon Hospital","Umm Haish Reserve","Vertebrate Genomes Project","Rockefeller University"],"startYear":2023,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Katara launched the program on 2 September 2023; current researcher and public repository records document multiple reference-genome outputs.","statusEvidenceDate":"2026-08-15","description":"National conservation-genomics program building chromosome-level references and genetic tests to guide breeding, releases, herd management, and preservation of culturally important species.","scaleSummary":"Published/deposited references include four falcon species plus Arabian horse, Arabian camel, and MacQueen's bustard; program aims to establish a specialized regional biodiversity-genomics center.","dataTypes":["long-read whole-genome sequencing","Hi-C","reference assemblies","population genetic tests","conservation data"],"accessionIds":["PRJNA1068121","PRJNA1068118","PRJNA1067650"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1068121"},{"scheme":"BioProject","value":"PRJNA1068118"},{"scheme":"BioProject","value":"PRJNA1067650"}],"dataAccess":"Selected reference genomes and reads are public in NCBI; project services and additional data are institutionally managed.","primarySourceUrl":"https://www.gulf-times.com/article/667711/qatar/katara-launches-biodiversity-genomes-programme","inclusionBasis":"Named national multi-species conservation-genomics program with public BioProject outputs.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Successor/expansion of the Qatar Falcon Genome Project; do not double-count falcon references when aggregating species outputs.","sources":[{"id":"public:qa-katara-biodiversity-genomes:s01","type":"primary record source","rank":1,"url":"https://www.gulf-times.com/article/667711/qatar/katara-launches-biodiversity-genomes-programme","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-katara-biodiversity-genomes:s02","type":"additional record source","rank":2,"url":"https://www.ncbi.nlm.nih.gov/bioproject/1068121","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-katara-biodiversity-genomes:s03","type":"additional record source","rank":3,"url":"https://www.ncbi.nlm.nih.gov/bioproject/1068118","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-katara-biodiversity-genomes:s04","type":"additional record source","rank":4,"url":"https://www.ncbi.nlm.nih.gov/bioproject/1067650","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-katara-biodiversity-genomes:s05","type":"additional record source","rank":5,"url":"https://www.qu.edu.qa/en-us/conference/qulss2025/farooq-omar-al-ajli","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":5},{"id":"qa-national-gene-bank","name":"Qatar Gene Bank","displayTitle":"Qatar Gene Bank","aliases":["National Gene Bank","Qatar Plant Genetic Resources Gene Bank","Biotechnology and Gene Bank Section"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Nationwide field collection across Qatar and its protected areas","projectType":"national plant genetic-resources bank and biodiversity documentation platform","domainGroup":"Agriculture, food and veterinary genomics","researchDomain":"plant genetic resources, biodiversity conservation and climate-resilient agriculture","organismPopulation":"Qatar's wild and cultivated plant species, preserved as seeds, herbarium material and genetic-resource accessions","leadOrganizations":["Qatar Ministry of Municipality Agricultural Research Department","Qatar Ministry of Municipality Biotechnology and Gene Bank Section"],"partnerOrganizations":["Arab Organization for Agricultural Development","Food and Agriculture Organization of the United Nations"],"startYear":2012,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The Ministry of Municipality reported new collection, documentation and international-registration totals during Qatar's June 2026 biodiversity observance.","statusEvidenceDate":"2026-06-02","description":"Qatar's national ex situ and documentation resource for plant genetic diversity, combining seed and herbarium conservation with field surveys, DNA fingerprinting and biotechnology for identification and drought- and salinity-resilient crop development.","scaleSummary":"By June 2026 the bank reported 11,366,834 preserved seeds covering about 75% of Qatar's wild plant varieties, 1,404 documented genetic accessions, more than 1,200 field missions, 3,500 herbarium specimens and 894 accessions registered in internationally recognized databases.","dataTypes":["seed accessions","herbarium vouchers","plant tissue and DNA","DNA fingerprinting","field collection metadata","taxonomic and passport data"],"accessionIds":[],"identifiers":[],"dataAccess":"A public plant-genetic-resources portal provides exchange and contact functions; physical material and detailed records are subject to Ministry and gene-bank access procedures.","primarySourceUrl":"https://qatargb.mm.gov.qa/ContactusInformation.aspx","inclusionBasis":"Named national, long-running genetic-resource platform with large reusable collections, DNA-fingerprinting activity and internationally registered accessions.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The official portal confirms institutional ownership but exposes limited descriptive metadata. Current scale figures come from QNA/Ministry statements reproduced by national media; '75%' is variously described as wild varieties or local species, so wording is kept conservative.","sources":[{"id":"public:qa-national-gene-bank:s01","type":"primary record source","rank":1,"url":"https://qatargb.mm.gov.qa/ContactusInformation.aspx","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-national-gene-bank:s02","type":"additional record source","rank":2,"url":"https://qatargb.mm.gov.qa/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-national-gene-bank:s03","type":"additional record source","rank":3,"url":"https://www.qatar-tribune.com/article/237150/nation/ministry-of-municipality-highlights-qatar-gene-banks-achievements-in-conserving-genetic-resources","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-national-gene-bank:s04","type":"additional record source","rank":4,"url":"https://thepeninsulaqatar.com/article/02/06/2026/qatar-gene-bank-preserves-1136-million-seeds-safeguarding-75-of-nations-wild-plant-diversity","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-national-gene-bank:s05","type":"additional record source","rank":5,"url":"https://thepeninsulaqatar.com/article/17/10/2025/qatar-gene-bank-preserves-over-11-million-seeds-documents-national-biodiversity","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":5},{"id":"qa-national-sars-cov2-sequencing","name":"Qatar National SARS-CoV-2 Sequencing Effort","displayTitle":"Qatar National SARS-CoV-2 Sequencing Effort","aliases":["Qatar COVID-19 Genome Sequencing Project"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National","projectType":"pathogen genomic surveillance","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"infectious disease genomics and public health","organismPopulation":"SARS-CoV-2-positive clinical samples in Qatar","leadOrganizations":["Qatar University Biomedical Research Center"],"partnerOrganizations":["Ministry of Public Health","Hamad Medical Corporation","Weill Cornell Medicine-Qatar"],"startYear":2020,"endYear":2022,"lifecycleStatus":"completed pandemic-scale sequencing; laboratory capacity retained","lifecycleGroup":"Completed / retained","statusBasis":"Qatar University's current BRC facility account credits the center with leading national sequencing of more than 8,000 samples and sharing sequences with public databases and authorities.","statusEvidenceDate":"2026-08-15","description":"National viral sequencing and variant analysis supporting outbreak reconstruction, variant monitoring, and policy during the COVID-19 pandemic.","scaleSummary":"More than 8,000 samples sequenced by the BRC; a major 2021 national variant survey separately analyzed 9,792 PCR-genotyped samples.","dataTypes":["viral whole-genome sequencing","variant genotyping","phylogenetics","epidemiological metadata"],"accessionIds":["PRJNA707370"],"identifiers":[{"scheme":"BioProject","value":"PRJNA707370"}],"dataAccess":"Selected sequences public in NCBI/GISAID; aggregate analyses in publications.","primarySourceUrl":"https://www.qu.edu.qa/en-us/Research/BRC/facilities/Pages/brc-labs.aspx","inclusionBasis":"National, multi-thousand-sample pathogen-genomics effort with public sequence deposition.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Sequence and PCR-genotype totals reflect different overlapping analyses and should not be added.","sources":[{"id":"public:qa-national-sars-cov2-sequencing:s01","type":"primary record source","rank":1,"url":"https://www.qu.edu.qa/en-us/Research/BRC/facilities/Pages/brc-labs.aspx","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-national-sars-cov2-sequencing:s02","type":"additional record source","rank":2,"url":"https://pubmed.ncbi.nlm.nih.gov/34525398/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-national-sars-cov2-sequencing:s03","type":"additional record source","rank":3,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA707370","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"qa-noor-qatar-beginngs","name":"NOOR-QATAR Genome-based Newborn Screening Program","displayTitle":"NOOR-QATAR Genome-based Newborn Screening Program","aliases":["NOOR-QATAR","BeginNGS Qatar"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National ambition; Sidra Medicine is the first international BeginNGS site","projectType":"newborn genome screening research program","domainGroup":"Human health and population genomics","researchDomain":"newborn genomics, rare disease, and preventive medicine","organismPopulation":"Newborns in Qatar","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":["Rady Children's Institute for Genomic Medicine","BeginNGS Consortium"],"startYear":2025,"endYear":null,"lifecycleStatus":"active early implementation","lifecycleGroup":"Active / operational","statusBasis":"Sidra announced the BeginNGS collaboration on 20 August 2025 and stated that it builds on the successful launch of NOOR-QATAR.","statusEvidenceDate":"2025-08-20","description":"Large-scale newborn genome screening research tailored to Qatar, linking early genomic risk detection with confirmatory pathways and treatments.","scaleSummary":"BeginNGS currently screens 511 severe childhood diseases and aims for 1,000 diseases in 10 countries by 2030; Qatar-specific enrollment has not been published.","dataTypes":["newborn whole-genome sequencing","screening algorithms","clinical confirmation","polygenic risk"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical/research program; no public participant-level data release.","primarySourceUrl":"https://www.sidra.org/media/news/2025/sidra-medicine-partners-with-beginngs-to-launch-genome-based-newborn-screening-research-program/","inclusionBasis":"Named national-scale newborn-genomics research initiative with an international screening protocol.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from HMC's Q-Chip newborn-screening pilot: NOOR-QATAR uses genome sequencing and Sidra/BeginNGS infrastructure.","sources":[{"id":"public:qa-noor-qatar-beginngs:s01","type":"primary record source","rank":1,"url":"https://www.sidra.org/media/news/2025/sidra-medicine-partners-with-beginngs-to-launch-genome-based-newborn-screening-research-program/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-path-towards-precision-medicine-grants","name":"Path Towards Precision Medicine Grants","displayTitle":"Path Towards Precision Medicine Grants","aliases":["PPM Grants","Pathway Towards Precision Medicine"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National research program with international collaboration","projectType":"competitive genomics research program","domainGroup":"Human health and population genomics","researchDomain":"precision medicine, population genomics, and multi-omics","organismPopulation":"Qatari population and disease cohorts","leadOrganizations":["Qatar Research, Development and Innovation Council","Qatar Precision Health Institute","Qatar Genome Programme"],"partnerOrganizations":["Qatar National Research Fund"],"startYear":2015,"endYear":null,"lifecycleStatus":"active recurring program","lifecycleGroup":"Active / operational","statusBasis":"QPHI identifies the program as its flagship funding mechanism and current materials reference successive annual cycles.","statusEvidenceDate":"2026-08-15","description":"Competitive grants translating QGP/QPHI population and disease data into genomic discovery, multi-omic research, biomarkers, and clinical applications.","scaleSummary":"At least eight completed/announced cycles; exact cumulative award and participant totals are distributed across calls.","dataTypes":["whole-genome analysis","omics","clinical phenotypes","biomarker studies"],"accessionIds":[],"identifiers":[],"dataAccess":"Project-specific; controlled QPHI data use where applicable.","primarySourceUrl":"https://www.qphi.org.qa/research/path-towards-precision-medicine-grants","inclusionBasis":"Long-running national funding mechanism that generated multiple major genomics cohorts and data resources.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Portfolio umbrella rather than a single cohort; individual funded projects are included only when they define a durable named resource.","sources":[{"id":"public:qa-path-towards-precision-medicine-grants:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/research/path-towards-precision-medicine-grants","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-path-towards-precision-medicine-grants:s02","type":"additional record source","rank":2,"url":"https://www.qphi.org.qa/index.php/research-and-partnerships-programs","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"qa-q-chip","name":"Q-Chip","displayTitle":"Q-Chip","aliases":["Qatari Gene Chip","Qatar Gene Chip"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar and Arab-region clinical/research applications","projectType":"population-specific genotyping platform","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"translational genomics and clinical genotyping","organismPopulation":"Qatari and Arab populations","leadOrganizations":["Qatar Genome Programme","Qatar Biobank","Qatar Precision Health Institute"],"partnerOrganizations":["Weill Cornell Medicine-Qatar","Hamad Medical Corporation Diagnostic Genomic Division","Sidra Medicine"],"startYear":2018,"endYear":null,"lifecycleStatus":"available and used in clinical pilots","lifecycleGroup":"Active / operational","statusBasis":"The platform launched in 2018 and remains on QPHI's current translational-genomics pages; HMC uses it in the 2024 genomic newborn-screening pilot.","statusEvidenceDate":"2026-08-15","description":"Custom genotyping array enriched for Qatari and Arab variants to improve local discovery, screening, and clinical interpretation relative to generic arrays.","scaleSummary":"No public marker count confirmed on the current page; derived from Qatar population-genomic findings and deployed in national collaborations.","dataTypes":["SNP genotyping array","population-specific variants","clinical screening"],"accessionIds":[],"identifiers":[],"dataAccess":"Platform access through partner institutions; not an open participant dataset.","primarySourceUrl":"https://www.qphi.org.qa/transitional-genomics/q-chip","inclusionBasis":"Named national population-specific genomic platform reused across research and clinical screening.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Platform output of QGP, not a cohort. Distinct from the broader Pan-Arab Array under development.","sources":[{"id":"public:qa-q-chip:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/transitional-genomics/q-chip","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-q-chip:s02","type":"additional record source","rank":2,"url":"https://www.press.qf.org.qa/ar/qatar-biobank-and-qgp-lead-efforts-to-develop-qatari-gene-chip","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"qa-q-scan-reproductive-screening","name":"Expanded Reproductive Genetic Screening Program and Q-Scan","displayTitle":"Expanded Reproductive Genetic Screening Program and Q-Scan","aliases":["Q-Scan","Screening for Reproductive Purposes"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National planned clinical implementation","projectType":"reproductive carrier-screening platform and pilot","domainGroup":"Human health and population genomics","researchDomain":"reproductive genetics and rare-disease prevention","organismPopulation":"Prospective parents/couples in Qatar","leadOrganizations":["Qatar Precision Health Institute"],"partnerOrganizations":["Qatar Genome Programme","national healthcare partners"],"startYear":null,"endYear":null,"lifecycleStatus":"pilot in design","lifecycleGroup":"Planned / proposed","statusBasis":"QPHI's current page states that the custom Q-Scan microarray is being developed and a pilot is currently being designed.","statusEvidenceDate":"2026-08-15","description":"Population-specific SNP array and clinical pathway intended to detect Qatari and regional founder mutations before reproduction.","scaleSummary":"No marker count, pilot size, or launch date published.","dataTypes":["SNP microarray","carrier screening","founder variants","clinical workflow evaluation"],"accessionIds":[],"identifiers":[],"dataAccess":"Not yet operational at scale; no public participant dataset.","primarySourceUrl":"https://www.qphi.org.qa/transitional-genomics/clinical-alliance","inclusionBasis":"Named national reproductive-genomics platform with an explicitly designed pilot.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Q-Scan is distinct from Q-Chip though both derive from QGP data; Q-Scan is reproductive-risk focused and not yet validated publicly.","sources":[{"id":"public:qa-q-scan-reproductive-screening:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/transitional-genomics/clinical-alliance","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-qatar-birth-cohort","name":"Qatar Birth Cohort Study","displayTitle":"Qatar Birth Cohort Study","aliases":["QBiC","Qatari Birth Cohort"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National; recruitment through Qatar maternity services","projectType":"prospective family birth cohort and biobank","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"life-course epidemiology, genetics, epigenomics, and microbiome","organismPopulation":"Pregnant Qatari and long-term-resident women, their children, and fathers","leadOrganizations":["Qatar Biobank","Qatar Precision Health Institute"],"partnerOrganizations":["Hamad Medical Corporation","Sidra Medicine","Primary Health Care Corporation"],"startYear":2018,"endYear":null,"lifecycleStatus":"recruiting and following families","lifecycleGroup":"Active / operational","statusBasis":"QPHI's current cohort page invites registration and describes five-year follow-up; the cohort was developed in 2018 and began recruitment in April 2019.","statusEvidenceDate":"2026-08-15","description":"Gulf mother-child-father cohort studying how genetic factors and environmental exposures interact across pregnancy and early childhood to shape chronic-disease risk.","scaleSummary":"Target 3,000 maternal pregnancies and mother-child-father triads, followed for five years; more than 400 pregnant women were reported in early recruitment updates.","dataTypes":["biospecimens","genomics","epigenomics","microbiome","clinical phenotypes","environmental exposure","longitudinal follow-up"],"accessionIds":["PRJNA1195396"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1195396"}],"dataAccess":"Controlled QPHI cohort access; selected substudies deposit de-identified sequence data.","primarySourceUrl":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","inclusionBasis":"Named reusable longitudinal family cohort with multi-omic sampling and a defined national target.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The NCBI accession is one oral-microbiome substudy, not the full cohort repository.","sources":[{"id":"public:qa-qatar-birth-cohort:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-birth-cohort:s02","type":"additional record source","rank":2,"url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12729693/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-birth-cohort:s03","type":"additional record source","rank":3,"url":"https://www.ncbi.nlm.nih.gov/bioproject/1195396","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-birth-cohort:s04","type":"additional record source","rank":4,"url":"https://www.qphi.org.qa/research/qatar-birth-cohort-study","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":4},{"id":"qa-qatar-falcon-genome-project","name":"Qatar Falcon Genome Project","displayTitle":"Qatar Falcon Genome Project","aliases":["Falcon Genome Project of Al Gannas"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar falconry and conservation populations","projectType":"falcon population and reference genomics project","domainGroup":"Human health and population genomics","researchDomain":"conservation genomics, breed identity, and falconry","organismPopulation":"Falcon species, breeds, and hybrids used in Qatar falconry","leadOrganizations":["Al Gannas Qatari Society","Cultural Village Foundation - Katara"],"partnerOrganizations":["Qatar and international genomics laboratories"],"startYear":2016,"endYear":2023,"lifecycleStatus":"historical program absorbed into KBGP","lifecycleGroup":"Completed / retained","statusBasis":"The project launched in January 2016, produced genomic identity/purity testing by 2021, and was explicitly named as the foundation for the 2023 Katara Biodiversity Genomes Programme.","statusEvidenceDate":"2023-09-02","description":"Falcon genome and population survey intended to create high-quality sequences and tests distinguishing species, breeds, purity, and hybrids.","scaleSummary":"Large population survey described, but public sample count not found; by 2021 a genetic examination for breed identity and hybridization was operational.","dataTypes":["falcon whole-genome sequencing","population markers","breed/purity testing","hybrid detection"],"accessionIds":[],"identifiers":[],"dataAccess":"Testing service and selected successor-program reference genomes; no separate consolidated legacy repository identified.","primarySourceUrl":"https://thepeninsulaqatar.com/article/14/03/2021/Al-Gannas-develops-genetic-examination-to-determine-identity%2C-breed-purity","inclusionBasis":"Named historical multi-sample falcon-genomics program with a durable genetic test and explicit successor.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Some later coverage incorrectly gives 2021 as launch; January 2016 is supported by contemporary reporting. Superseded/expanded by KBGP.","sources":[{"id":"public:qa-qatar-falcon-genome-project:s01","type":"primary record source","rank":1,"url":"https://thepeninsulaqatar.com/article/14/03/2021/Al-Gannas-develops-genetic-examination-to-determine-identity%2C-breed-purity","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-falcon-genome-project:s02","type":"additional record source","rank":2,"url":"https://www.gulf-times.com/article/667711/qatar/katara-launches-biodiversity-genomes-programme","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"qa-qatar-genome-programme","name":"Qatar Genome Programme","displayTitle":"Qatar Genome Programme","aliases":["QGP","Qatar Genome Project"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National","projectType":"national population genomics program","domainGroup":"Human health and population genomics","researchDomain":"human population genomics and precision medicine","organismPopulation":"Participants in Qatar Biobank/QPHI population and disease cohorts","leadOrganizations":["Qatar Foundation","Qatar Genome Programme","Qatar Precision Health Institute"],"partnerOrganizations":["Qatar Biobank","Sidra Medicine","Hamad Medical Corporation","Weill Cornell Medicine-Qatar","Hamad Bin Khalifa University","Qatar University"],"startYear":2015,"endYear":null,"lifecycleStatus":"active within QPHI","lifecycleGroup":"Active / operational","statusBasis":"QPHI's 2024 launch reporting stated that more than 40,000 genomes had been sequenced and current genomic-data pipelines and releases remain online.","statusEvidenceDate":"2026-08-15","description":"National sequencing program integrating whole genomes with Qatar Biobank phenotypes and other omics to characterize Qatari variation, discover disease associations, and enable clinical precision health.","scaleSummary":"More than 10,000 genomes by 2018 and more than 40,000 by April 2024; current controlled release contains 24,838 healthy-participant whole genomes.","dataTypes":["whole-genome sequencing","small and structural variants","HLA","STRs","pharmacogenomics","proteomics","metabolomics","linked phenotypes"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled through QPHI; cohort-level and individual files are supplied to approved researchers.","primarySourceUrl":"https://www.qphi.org.qa/our-history-and-our-ecosystem","inclusionBasis":"National flagship population-sequencing program with tens of thousands of genomes and reusable controlled releases.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Announced conceptually in 2013 and established operationally in 2015. It is now part of QPHI. QTRG is a separate earlier reference project.","sources":[{"id":"public:qa-qatar-genome-programme:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/our-history-and-our-ecosystem","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-genome-programme:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41467-021-21381-3","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-genome-programme:s03","type":"additional record source","rank":3,"url":"https://www.qphi.org.qa/genomicdata","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-genome-programme:s04","type":"additional record source","rank":4,"url":"https://www.nature.com/articles/s41467-021-25287-y","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-genome-programme:s05","type":"additional record source","rank":5,"url":"https://onlinelibrary.wiley.com/doi/10.1002/humu.24336","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-genome-programme:s06","type":"additional record source","rank":6,"url":"https://reports.qf.org.qa/2024-year-in-review/precision-health","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":6},{"id":"qa-qatar-population-cohort-study","name":"Qatar Population Cohort Study","displayTitle":"Qatar Population Cohort Study","aliases":["Qatar Biobank Population Study","QBB Cohort"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National","projectType":"prospective population cohort and biobank","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"population health, genomics, imaging, and multi-omics","organismPopulation":"Qatari adults and residents living in Qatar for at least 15 years","leadOrganizations":["Qatar Biobank","Qatar Precision Health Institute"],"partnerOrganizations":["Qatar Foundation","Hamad Medical Corporation","Primary Health Care Corporation"],"startYear":2012,"endYear":null,"lifecycleStatus":"recruiting and following participants","lifecycleGroup":"Active / operational","statusBasis":"The current QPHI cohort page calls it the first and longest-running study, states a target of 60,000, and offers active registration and five-year follow-up.","statusEvidenceDate":"2026-08-15","description":"Deeply phenotyped population cohort collecting biospecimens, physical measurements, questionnaires, organ function, imaging, and longitudinal follow-up; it supplies samples and phenotypes for Qatar Genome Programme.","scaleSummary":"Target 60,000 participants; nearly 50,000 participants reported across the integrated QPHI ecosystem. Five-year follow-up includes repeat assessment and body/brain MRI.","dataTypes":["blood","urine","saliva","DNA","clinical measurements","questionnaires","MRI","longitudinal follow-up","linked genomic data"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled application through QPHI; no open individual-level cohort data.","primarySourceUrl":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","inclusionBasis":"Large reusable national prospective cohort and biobank with direct linkage to genomic data.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Qatar Genome Programme sequences a subset of this cohort; counts must not be added as independent persons.","sources":[{"id":"public:qa-qatar-population-cohort-study:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-population-cohort-study:s02","type":"additional record source","rank":2,"url":"https://pubmed.ncbi.nlm.nih.gov/30927351/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-population-cohort-study:s03","type":"additional record source","rank":3,"url":"https://researchportal.qphi.org.qa/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"qa-qatar-precision-health-institute","name":"Qatar Precision Health Institute","displayTitle":"Qatar Precision Health Institute","aliases":["QPHI"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National","projectType":"national precision-health umbrella and enabling institute","domainGroup":"Human health and population genomics","researchDomain":"population genomics, biobanking, translational genomics, and precision health","organismPopulation":"Qatari nationals and long-term residents; regional Arab populations in selected projects","leadOrganizations":["Qatar Foundation","Qatar Precision Health Institute"],"partnerOrganizations":["Hamad Medical Corporation","Sidra Medicine","Weill Cornell Medicine-Qatar","Hamad Bin Khalifa University","Qatar University","Primary Health Care Corporation"],"startYear":2024,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Qatar Foundation formally launched QPHI on 30 April 2024 by integrating Qatar Biobank and Qatar Genome Programme; current pages operate participant, research, genomic-data, and translational services.","statusEvidenceDate":"2026-08-15","description":"National institute combining the population biobank, genome program, disease genomics, research access, return of results, pharmacogenomics, reproductive screening, and precision-health translation.","scaleSummary":"More than 40,000 genomes reported at launch; nearly 50,000 participants in the integrated ecosystem; goal of 100,000 unique genomic maps.","dataTypes":["whole-genome sequencing","biospecimens","clinical phenotypes","imaging","proteomics","metabolomics","microbiome","research and clinical reports"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled through the QPHI research portal and data catalog; selected aggregate information is public.","primarySourceUrl":"https://www.qphi.org.qa/about-us","inclusionBasis":"Current national umbrella integrating Qatar's principal population-genomics and biobanking programs.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Administrative successor/umbrella, not a new independent cohort. Qatar Biobank, Qatar Genome Programme, and named translational initiatives are retained separately as lineage/components.","sources":[{"id":"public:qa-qatar-precision-health-institute:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/about-us","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-precision-health-institute:s02","type":"additional record source","rank":2,"url":"https://researchportal.qphi.org.qa/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-precision-health-institute:s03","type":"additional record source","rank":3,"url":"https://www.qphi.org.qa/events/qatar-precision-health-institute-launch","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-precision-health-institute:s04","type":"additional record source","rank":4,"url":"https://www.qphi.org.qa/HHSheikhaMoza","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-precision-health-institute:s05","type":"additional record source","rank":5,"url":"https://www.qphi.org.qa/our-history-and-our-ecosystem","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":5},{"id":"qa-qatar-precision-health-research-consortium","name":"Qatar Precision Health Research Consortium","displayTitle":"Qatar Precision Health Research Consortium","aliases":["QPHRC","Qatar Genome Research Consortium","QGRC"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National consortium with international collaborators","projectType":"research consortium and program portfolio","domainGroup":"Human health and population genomics","researchDomain":"population genomics, multi-omics, disease genetics, and AI","organismPopulation":"QPHI/QGP cohorts and disease-specific participants","leadOrganizations":["Qatar Precision Health Institute","Qatar Genome Programme"],"partnerOrganizations":["Qatar universities, hospitals, and research institutes","international academic collaborators"],"startYear":2016,"endYear":null,"lifecycleStatus":"active second round","lifecycleGroup":"Active / operational","statusBasis":"The original Qatar Genome Research Consortium launched in 2017 after a 2016 call; QPHI kicked off a second round under the QPHRC name on 1 December 2025 with 20 approved projects.","statusEvidenceDate":"2025-12-01","description":"National mechanism organizing multidisciplinary use of QPHI/QGP data in cardiometabolic disease, cancer, autoimmunity, rare variants, neurodegeneration, reproduction, pharmacogenomics, and genomic AI.","scaleSummary":"First round included 10 whole-genome studies and more than 150 researchers; second round includes 20 approved projects.","dataTypes":["whole-genome analysis","multi-omics","phenotypes","statistical genetics","AI models"],"accessionIds":[],"identifiers":[],"dataAccess":"Approved consortium projects use controlled QPHI data.","primarySourceUrl":"https://www.qphi.org.qa/research/qatar-genome-research-consortium","inclusionBasis":"Named national genomics consortium coordinating a substantial portfolio of multi-sample studies.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Treat QGRC and QPHRC as one program lineage/renaming. Individual second-round projects are not separately inventoried unless they define a durable cohort or platform.","sources":[{"id":"public:qa-qatar-precision-health-research-consortium:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/research/qatar-genome-research-consortium","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-precision-health-research-consortium:s02","type":"additional record source","rank":2,"url":"https://researchportal.qphi.org.qa/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-precision-health-research-consortium:s03","type":"additional record source","rank":3,"url":"https://www.qphi.org.qa/news/qgp-research-consortium","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-precision-health-research-consortium:s04","type":"additional record source","rank":4,"url":"https://www.qphi.org.qa/index.php/news/qatar-precision-health-research-consortium-qphrc","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-precision-health-research-consortium:s05","type":"additional record source","rank":5,"url":"https://www.qphi.org.qa/index.php/research-and-partnerships-programs","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":5},{"id":"qa-qatar-twin-biorepository","name":"Qatar Twin Biorepository","displayTitle":"Qatar Twin Biorepository","aliases":["Qatar Twin Registry","Qatar's Twin Registry"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar, accepting resident twins of all nationalities and ages","projectType":"twin registry, cohort, and biorepository","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"genetic epidemiology of complex disease","organismPopulation":"Identical and non-identical twins and family members","leadOrganizations":["Qatar University","Qatar Precision Health Institute"],"partnerOrganizations":["Sidra Medicine"],"startYear":2024,"endYear":null,"lifecycleStatus":"recruiting","lifecycleGroup":"Active / operational","statusBasis":"QPHI's current page offers registration; Qatar Foundation reported more than 100 twin pairs enrolled by February 2025.","statusEvidenceDate":"2025-02-01","description":"National twin resource for separating genetic and environmental contributions to obesity, diabetes, cardiovascular disease, and other traits.","scaleSummary":"More than 100 twin pairs enrolled by early 2025; open to twins and family members, including children and adults.","dataTypes":["biospecimens","zygosity/genetic data","clinical phenotypes","family data"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled collaboration through QPHI/Qatar University.","primarySourceUrl":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","inclusionBasis":"First national twin cohort and biorepository with active recruitment and a reusable family resource.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Registry and biorepository are treated as one project lineage.","sources":[{"id":"public:qa-qatar-twin-biorepository:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatar-twin-biorepository:s02","type":"additional record source","rank":2,"url":"https://www.qf.org.qa/stories/why-a-project-to-create-qatars-first-twin-registry-marks-a-key-step-in","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"qa-qatari-reference-genome","name":"Qatari Reference Genome","displayTitle":"Qatari Reference Genome","aliases":["QTRG","QTRG1","QTRG2","QTRG3","The Qatar Genome"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National Qatari population reference","projectType":"population reference genome and public dataset","domainGroup":"Human health and population genomics","researchDomain":"human population genomics and reference resources","organismPopulation":"1,376 sequenced Qataris and Qatar residents in the published resource","leadOrganizations":["Weill Cornell Medicine-Qatar"],"partnerOrganizations":["Sidra Medicine","Hamad Medical Corporation","Cornell University"],"startYear":2015,"endYear":2016,"lifecycleStatus":"completed reference; public sequence resource","lifecycleGroup":"Completed / retained","statusBasis":"The QTRG paper was published 30 June 2016 and made mapped sequence, variant calls, customized references, and interpretation tools publicly available.","statusEvidenceDate":"2016-06-30","description":"Population-specific major-allele references and variant catalog designed to improve alignment and Mendelian disease interpretation for Qatari and related Middle Eastern populations.","scaleSummary":"1,376 individuals across WGS/exome experiments; approximately 26 million SNPs and indels; QTRG1-3 references and 122 curated pathogenic variants.","dataTypes":["whole-genome sequencing","whole-exome sequencing","BAM","VCF","major-allele reference","pathogenic variant catalog"],"accessionIds":["SRP060765","SRP061943","SRP061463"],"identifiers":[{"scheme":"Sequence study","value":"SRP060765"},{"scheme":"Sequence study","value":"SRP061943"},{"scheme":"Sequence study","value":"SRP061463"}],"dataAccess":"Open SRA sequence/variant resources and public reference tools as described in the paper.","primarySourceUrl":"https://vivo.weill.cornell.edu/display/pubid27408750","inclusionBasis":"Reusable public population reference, variant catalog, and multi-sample sequence dataset.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Scientific precursor/complement to QGP, not the same program. The paper's 1,376 includes 1,161 Qataris plus 215 non-Qatari residents and repeated experiments for one sample.","sources":[{"id":"public:qa-qatari-reference-genome:s01","type":"primary record source","rank":1,"url":"https://vivo.weill.cornell.edu/display/pubid27408750","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatari-reference-genome:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/hgv201616","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qatari-reference-genome:s03","type":"additional record source","rank":3,"url":"https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP060765%2CSRP061943%2CSRP061463&go=go","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"qa-qbri-qgp-autism-wgs","name":"QBRI-Qatar Genome Autism Whole-Genome Sequencing Initiative","displayTitle":"QBRI-Qatar Genome Autism Whole-Genome Sequencing Initiative","aliases":["QBRI-QGP Autism Genome Project","QBRI Autism Research Program WGS Initiative","QBRI-2010-002"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatari families recruited primarily through the Shafallah Center in Doha","projectType":"family-trio disease genomics cohort","domainGroup":"Human health and population genomics","researchDomain":"autism genomics and neurodevelopmental precision medicine","organismPopulation":"Qataris with autism spectrum disorder and their apparently unaffected biological parents","leadOrganizations":["Qatar Biomedical Research Institute","Qatar Genome Programme"],"partnerOrganizations":["Hamad Bin Khalifa University","Shafallah Center for Persons with Disabilities","Qatar Foundation"],"startYear":2019,"endYear":2024,"lifecycleStatus":"planned sequencing phase and initial cohort analysis completed","lifecycleGroup":"Completed / retained","statusBasis":"The October 2019 agreement specified two years of whole-genome sequencing; a 150-person trio cohort recruited under the program was published on 27 October 2024.","statusEvidenceDate":"2024-10-27","description":"A QBRI-QGP family sequencing initiative designed to identify rare and inherited autism-risk variants in Qataris and translate locally relevant genomic findings into screening and counseling knowledge.","scaleSummary":"Published analysis included 50 autism probands and both biological parents, totaling 150 genomes at approximately 35x mean depth; it reported 37 candidate variants and 13 genes not previously linked to autism.","dataTypes":["family-trio whole-genome sequencing","clinical autism assessments","SNV and indel analysis","repeat-expansion analysis","consanguinity and pedigree data"],"accessionIds":["QBRI-2010-002"],"identifiers":[{"scheme":"Other","value":"QBRI-2010-002"}],"dataAccess":"Participant-level genomes are not documented as openly deposited; access is subject to QBRI/Qatar ethics, consent and data-governance restrictions.","primarySourceUrl":"https://www.hbku.edu.qa/en/news/qbri-qatar-genome","inclusionBasis":"Named national institutional collaboration with a reusable family-trio cohort and a published multi-genome dataset.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from Sidra's BARAKA-Qatar program in lead institution, recruitment pathway and published cohort description, although participant overlap cannot be excluded from public sources. The 2024 publication establishes an analyzed phase, not necessarily closure of all QBRI autism genomics work.","sources":[{"id":"public:qa-qbri-qgp-autism-wgs:s01","type":"primary record source","rank":1,"url":"https://www.hbku.edu.qa/en/news/qbri-qatar-genome","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qbri-qgp-autism-wgs:s02","type":"additional record source","rank":2,"url":"https://www.mdpi.com/1422-0067/25/21/11551","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qbri-qgp-autism-wgs:s03","type":"additional record source","rank":3,"url":"https://pubmed.ncbi.nlm.nih.gov/39519104/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qbri-qgp-autism-wgs:s04","type":"additional record source","rank":4,"url":"https://elmi.hbku.edu.qa/en/publications/genome-sequencing-identifies-13-novel-candidate-risk-genes-for-au/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":4},{"id":"qa-qcbio-atrial-fibrillation","name":"Qatar Cardiovascular Biorepository Atrial-Fibrillation Study","displayTitle":"Qatar Cardiovascular Biorepository Atrial-Fibrillation Study","aliases":["QCBio AF"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar; Qatari and GCC-national participants","projectType":"disease genomics cohort and family study","domainGroup":"Human health and population genomics","researchDomain":"cardiovascular genomics","organismPopulation":"Adults with atrial fibrillation or early-onset atrial fibrillation and their relatives","leadOrganizations":["Qatar Precision Health Institute","Hamad Medical Corporation"],"partnerOrganizations":[],"startYear":null,"endYear":null,"lifecycleStatus":"recruiting","lifecycleGroup":"Active / operational","statusBasis":"QPHI's current disease-study page lists eligibility and provides an active participant registration route.","statusEvidenceDate":"2026-08-15","description":"Family-enriched atrial-fibrillation cohort intended to identify genomic risk in Qatari and GCC populations.","scaleSummary":"No public participant target or current enrollment count identified.","dataTypes":["biospecimens","genomic data","clinical phenotypes","family data"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled QPHI access.","primarySourceUrl":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","inclusionBasis":"Named currently recruiting cardiovascular disease/family genomics study.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Relationship to the completed QCBio CHD resource is a brand/program lineage but not explicitly described as a formal successor.","sources":[{"id":"public:qa-qcbio-atrial-fibrillation:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/cohorts-and-disease-based-studies","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-qcbio-coronary-heart-disease","name":"Qatar Cardiovascular Biorepository Coronary Heart Disease Study","displayTitle":"Qatar Cardiovascular Biorepository Coronary Heart Disease Study","aliases":["QCBio CHD","Qatar Cardiovascular Biorepository"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National hospital-based recruitment","projectType":"prospective case-control biorepository","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"cardiovascular genomics and biomarker discovery","organismPopulation":"Adults with coronary heart disease and controls in Qatar","leadOrganizations":["Hamad Medical Corporation"],"partnerOrganizations":["Qatar Biobank","Qatar Genome Programme","Weill Cornell Medicine-Qatar"],"startYear":2012,"endYear":2018,"lifecycleStatus":"completed recruitment; resource retained","lifecycleGroup":"Active / operational","statusBasis":"The registered prospective study and cohort paper document recruitment from 2012/2013 through early 2018 and a final analytical cohort of 2,087.","statusEvidenceDate":"2020-02-01","description":"Clinical biorepository created to support genetic and biomarker studies of coronary heart disease, with cases, controls, DNA, plasma, questionnaires, and longitudinal outcomes.","scaleSummary":"2,087 participants: 1,029 CHD cases and 1,058 controls; whole-genome sequencing planned/performed through Qatar Genome/Qatar Biobank for genomic phases.","dataTypes":["DNA","plasma","whole-genome sequencing","clinical phenotypes","questionnaires","follow-up outcomes"],"accessionIds":["NCT03427489"],"identifiers":[{"scheme":"ClinicalTrials.gov","value":"NCT03427489"}],"dataAccess":"Controlled institutional collaboration; trial metadata are public.","primarySourceUrl":"https://clinicaltrials.gov/study/NCT03427489","inclusionBasis":"Large named cardiovascular biorepository with a defined sample set and genome-sequencing linkage.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Historical CHD cohort. The current QCBio atrial-fibrillation study appears to continue the brand but recruits a different disease population and is recorded separately.","sources":[{"id":"public:qa-qcbio-coronary-heart-disease:s01","type":"primary record source","rank":1,"url":"https://clinicaltrials.gov/study/NCT03427489","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qcbio-coronary-heart-disease:s02","type":"additional record source","rank":2,"url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC7006334/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"qa-qpgx-cares","name":"QPGx-CARES","displayTitle":"QPGx-CARES","aliases":["Qatar Pharmacogenetics Clinical Applications and Research Enhancement Strategies","Qatar Pharmacogenomics Initiative"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National healthcare system","projectType":"pharmacogenomics implementation framework and pilots","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"pharmacogenomics and precision prescribing","organismPopulation":"Patients in Qatar healthcare settings, initially cardiovascular medicine","leadOrganizations":["Qatar Precision Health Institute"],"partnerOrganizations":["Qatar healthcare providers and clinical laboratories"],"startYear":null,"endYear":null,"lifecycleStatus":"active pilot implementation","lifecycleGroup":"Active / operational","statusBasis":"QPHI's current page describes active cardiovascular pilot projects and nationwide reactive and preemptive implementation planning.","statusEvidenceDate":"2026-08-15","description":"National framework standardizing pharmacogenomic testing, clinical decision support, and evidence generation across healthcare settings.","scaleSummary":"Initial cardiovascular pilots; planned expansion to cancer and mental-health medications. No public patient count.","dataTypes":["pharmacogenomic genotyping","clinical decision support","medication outcomes","implementation data"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical implementation; aggregate research outputs as published.","primarySourceUrl":"https://www.qphi.org.qa/transitional-genomics/pharmacogenomics","inclusionBasis":"Named nationwide pharmacogenomics implementation initiative with current clinical pilots.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"No launch year or participant count is stated.","sources":[{"id":"public:qa-qpgx-cares:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/transitional-genomics/pharmacogenomics","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-qphi-25k-genomic-release","name":"QPHI 25K Genomic Data Release","displayTitle":"QPHI 25K Genomic Data Release","aliases":["QPHI-Qatari Version 1","QPHI-P-Q 25k Release","Qatar Genome 25K Study"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National Qatari population cohort","projectType":"controlled population genomic dataset","domainGroup":"Human health and population genomics","researchDomain":"population genomics and multi-omics","organismPopulation":"24,838 healthy Qatar Biobank participants","leadOrganizations":["Qatar Precision Health Institute","Qatar Genome Programme","Qatar Biobank"],"partnerOrganizations":[],"startYear":2024,"endYear":null,"lifecycleStatus":"available to approved researchers","lifecycleGroup":"Active / operational","statusBasis":"QPHI announced the release on 24 October 2024 and its current genomic-data page documents Version 1 files and pipelines.","statusEvidenceDate":"2026-08-15","description":"Standardized controlled release of germline genomes and cohort-level resources, including aggregated VCF, Hail, PLINK, principal components, relatedness, and multiple specialized variant calls.","scaleSummary":"24,838 whole genomes; proteomics for 2,817 participants; metabolomics for 2,877 participants.","dataTypes":["CRAM","gVCF","multi-sample VCF","structural variants","copy-number variants","HLA","STR","SMN","pharmacogenomics","PLINK","Hail MatrixTable","proteomics","metabolomics"],"accessionIds":["QPHI-P-Q-v1"],"identifiers":[{"scheme":"Other","value":"QPHI-P-Q-v1"}],"dataAccess":"Controlled QPHI research application; no open individual-level download.","primarySourceUrl":"https://www.qphi.org.qa/genomicdata","inclusionBasis":"Versioned, reusable, large-scale controlled genomic and multi-omic dataset.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Dataset/release nested within QGP and Qatar Biobank; do not count its 24,838 people again as a separate cohort.","sources":[{"id":"public:qa-qphi-25k-genomic-release:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/genomicdata","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qphi-25k-genomic-release:s02","type":"additional record source","rank":2,"url":"https://researchportal.qphi.org.qa/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qphi-25k-genomic-release:s03","type":"additional record source","rank":3,"url":"https://www.qphi.org.qa/news/qphi-advances-precision-health-release-25000-new-genomic-data-and-new-opportunities-research","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"qa-qu-extremophile-biobank-biotechnology","name":"Qatar University Biotechnology Program and Extremophile Biobank","displayTitle":"Qatar University Biotechnology Program and Extremophile Biobank","aliases":["Center for Sustainable Development Biotechnology Program","Qatar Extremophile and Halotolerant Microorganism Biobank"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar's terrestrial and marine environments, with intended regional research use","projectType":"microbial biobank, bioprospecting and environmental genomics platform","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"microbial genomics, environmental DNA, metagenomics and sustainable biotechnology","organismPopulation":"Qatari extremophile and halotolerant bacteria, archaea and fungi, plus marine and terrestrial environmental DNA","leadOrganizations":["Qatar University Center for Sustainable Development"],"partnerOrganizations":[],"startYear":null,"endYear":null,"lifecycleStatus":"active program; biobank build-out status not quantified","lifecycleGroup":"Active / operational","statusBasis":"Qatar University's current Biotechnology Program page identifies creation of the biobank, microbial bioprospecting, gene editing, eDNA and metagenomic monitoring as program targets, but does not provide a dated launch or holdings total.","statusEvidenceDate":"2026-08-15","description":"An applied microbial-biodiversity program intended to create Qatar and the region's first extremophile/halotolerant microorganism biobank and translate locally adapted strains into biofertilizers, food/feed, bioplastics, antibiotics and environmental-monitoring tools.","scaleSummary":"No verified holdings or sample count published; the planned resource spans bacteria, archaea and fungi and includes eDNA/metagenomics for marine and terrestrial biodiversity assessment.","dataTypes":["microbial isolates","biobank specimens","whole-genome and marker sequencing","environmental DNA","metagenomics","gene editing","functional bioprospecting data"],"accessionIds":[],"identifiers":[],"dataAccess":"No public catalog or accession policy identified; collaboration and sample access appear to be institutionally managed.","primarySourceUrl":"https://www.qu.edu.qa/en-us/Research/sustainable-development-center/Research/Pages/biotechnology.aspx","inclusionBasis":"Officially defined multi-project enabling program centered on a reusable microbial biobank and eDNA/metagenomics, not an isolated experiment.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The biobank is described as a target rather than a completed quantified collection. Start year, partners and repository access remain unreported; retain as an enabling platform with explicit uncertainty.","sources":[{"id":"public:qa-qu-extremophile-biobank-biotechnology:s01","type":"primary record source","rank":1,"url":"https://www.qu.edu.qa/en-us/Research/sustainable-development-center/Research/Pages/biotechnology.aspx","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-qu-extremophile-biobank-biotechnology:s02","type":"additional record source","rank":2,"url":"https://www.qu.edu.qa/en-us/Research/sustainable-development-center/Research/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"qa-reproductive-perinatal-health-program","name":"Reproductive and Perinatal Health Translational Research Program","displayTitle":"Reproductive and Perinatal Health Translational Research Program","aliases":["Reproductive & Perinatal Health Program"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar national maternal and reproductive health catchment","projectType":"clinical multi-omics cohort program","domainGroup":"Human health and population genomics","researchDomain":"reproductive health, pregnancy, perinatal outcomes, and multi-omics","organismPopulation":"Women, couples, pregnancies, newborns, and families affected by infertility, gestational diabetes, prematurity, and related conditions","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":["Qatar clinical and research collaborators"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Sidra's current program page describes active translational cohorts and integrated genomics, epigenomics, transcriptomics, proteomics, metabolomics, and microbiome research.","statusEvidenceDate":"2026-08-15","description":"Multi-cohort program investigating molecular drivers of infertility and adverse pregnancy/perinatal outcomes and translating them into diagnostics and prevention.","scaleSummary":"Multiple disease and pregnancy cohorts; no consolidated public enrollment count.","dataTypes":["genomics","epigenomics","transcriptomics","proteomics","metabolomics","microbiome","clinical phenotypes","biospecimens"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled Sidra collaboration.","primarySourceUrl":"https://www.sidra.org/research/divisions/translational-research-programs/reproductive-perinatal-health-translational-research-program/","inclusionBasis":"Named national clinical multi-omics program with reusable maternal, reproductive, and perinatal cohorts.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"May intersect with Qatar Birth Cohort participants but is an institutional clinical-program umbrella; overlap is not quantified.","sources":[{"id":"public:qa-reproductive-perinatal-health-program:s01","type":"primary record source","rank":1,"url":"https://www.sidra.org/research/divisions/translational-research-programs/reproductive-perinatal-health-translational-research-program/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-return-clinically-actionable-results","name":"Return of Clinically Actionable Genomic Research Findings","displayTitle":"Return of Clinically Actionable Genomic Research Findings","aliases":["QPHI Returning Genomic Information Program","Return of Results Program"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National QPHI participant cohort with HMC referral","projectType":"translational return-of-results program","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"clinical genomics, hereditary disease, and preventive care","organismPopulation":"QPHI/Qatar Biobank participants with actionable germline variants and their relatives","leadOrganizations":["Qatar Precision Health Institute"],"partnerOrganizations":["Hamad Medical Corporation Cancer Genetics Program"],"startYear":2025,"endYear":null,"lifecycleStatus":"active and expanding","lifecycleGroup":"Active / operational","statusBasis":"QPHI's current page states that it has implemented a clinical referral pathway after a BRCA pilot and is expanding to a broader gene/condition panel.","statusEvidenceDate":"2026-08-15","description":"Program identifies medically actionable variants in research genomes, confirms them clinically, returns consented findings, and connects participants and relatives with surveillance and preventive care.","scaleSummary":"14,392 whole genomes analyzed, approximately 3.5% carrying clinically actionable variants. The published BRCA pilot screened 6,142 genomes, confirmed 10 carriers, enrolled eight in surveillance, and extended testing to 20 relatives.","dataTypes":["whole-genome sequencing","actionable variant curation","clinical confirmation","return of results","cascade testing"],"accessionIds":[],"identifiers":[],"dataAccess":"Individual results returned under consent; research genomes remain controlled.","primarySourceUrl":"https://www.qphi.org.qa/transitional-genomics/returning-genomic-information","inclusionBasis":"Large, genome-wide translational program with a documented clinical pathway and quantitative pilot.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Direct downstream use of QGP/QPHI genomes; not a new population cohort.","sources":[{"id":"public:qa-return-clinically-actionable-results:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/transitional-genomics/returning-genomic-information","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-return-clinically-actionable-results:s02","type":"additional record source","rank":2,"url":"https://www.mdpi.com/2227-9059/13/12/3047","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"qa-salivary-microbiome-project","name":"Qatar Salivary Microbiome Project","displayTitle":"Qatar Salivary Microbiome Project","aliases":["Salivary Microbiome and Host Biomarkers Project","PPM2-0216-170012"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National Qatari adult cohort nested in Qatar Biobank and Qatar Genome resources","projectType":"population microbiome and biomarker cohort","domainGroup":"Human health and population genomics","researchDomain":"human microbiome, cardiovascular and metabolic precision health","organismPopulation":"salivary microbial communities and host biomarkers in adult Qatari participants","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":["Qatar Genome Programme","Qatar Biobank","Hamad Bin Khalifa University","Qatar Biomedical Research Institute","Qatar University","Qatar National Research Fund"],"startYear":2017,"endYear":null,"lifecycleStatus":"major cohort analyses published; continuing resource status not explicitly reported","lifecycleGroup":"Other / unstated","statusBasis":"The official precision-medicine grant page proposed 2,000 participants; population reference and disease-association analyses were published in 2020-2021 using Qatar Biobank/Qatar Genome samples, but no later operational update establishes ongoing recruitment.","statusEvidenceDate":"2021-12-15","description":"A Qatar-specific salivary microbiome initiative designed to establish a healthy reference and test non-invasive microbial and host biomarkers against diet, clinical traits and noncommunicable-disease risk.","scaleSummary":"Planned 16S profiling of 2,000 Qatar Genome participants; the initial reference paper analyzed 997 adults, and an expanded cardiovascular analysis reported 2,974 Qatari participants.","dataTypes":["saliva samples","16S rRNA amplicon sequencing","planned metagenomics","clinical phenotypes","dietary and nutrition data","proteomics","metabolomics"],"accessionIds":["PPM2-0216-170012"],"identifiers":[{"scheme":"Other","value":"PPM2-0216-170012"}],"dataAccess":"De-identified participant data and samples are governed by Qatar Biobank/Qatar Genome approvals; publications state access may be requested subject to ethics and institutional review.","primarySourceUrl":"https://www.qphi.org.qa/ppm2-0216-170012","inclusionBasis":"Named multi-hundred-to-thousand-participant microbiome project nested in reusable national cohort infrastructure.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Published sample counts differ by analysis and should not be summed; they likely represent overlapping Qatar Biobank/Qatar Genome participants. The grant proposed metagenomics, while major published population studies used 16S profiling.","sources":[{"id":"public:qa-salivary-microbiome-project:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/ppm2-0216-170012","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-salivary-microbiome-project:s02","type":"additional record source","rank":2,"url":"https://link.springer.com/article/10.1186/s12967-020-02291-2","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-salivary-microbiome-project:s03","type":"additional record source","rank":3,"url":"https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2021.772736/full","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-salivary-microbiome-project:s04","type":"additional record source","rank":4,"url":"https://www.qf.org.qa/stories/how-our-saliva-is-a-stepping-stone-to-precision-medicine","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":4},{"id":"qa-sidra-microbiome-service","name":"Sidra Medicine Microbiome Service","displayTitle":"Sidra Medicine Microbiome Service","aliases":["Specialized Microbiome Service","Laboratory of Microbiome and Biomarkers Discovery Service"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar with service availability to academic and industry investigators across the MENA region","projectType":"enabling sequencing and bioinformatics platform","domainGroup":"Human health and population genomics","researchDomain":"microbiome science, translational genomics and precision medicine","organismPopulation":"microbial communities from human and experimental samples, including stool, oral, vaginal, blood, breastmilk, skin and tissue","leadOrganizations":["Sidra Medicine Laboratory of Microbiome and Biomarkers Discovery"],"partnerOrganizations":["Qatar Foundation"],"startYear":2026,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Sidra Medicine launched the specialized paid service on World Microbiome Day, 27 June 2026, and its live service page lists sequencing, extraction and analysis offerings.","statusEvidenceDate":"2026-06-27","description":"A national enabling platform providing microbial DNA extraction, marker-gene and shotgun metagenomic sequencing plus composition, statistical and ecological-network analysis for research and precision-health applications.","scaleSummary":"No cumulative sample count reported; current offerings include 16S, 18S/ITS and shotgun metagenomics with bioinformatic interpretation across multiple body sites.","dataTypes":["microbial DNA extraction","16S rRNA sequencing","18S rRNA sequencing","ITS sequencing","shotgun metagenomics","microbiome composition analysis","ecological network analysis"],"accessionIds":[],"identifiers":[],"dataAccess":"Fee-for-service access by request for academic and industry investigators; project-specific data access is determined by each commissioning study.","primarySourceUrl":"https://www.sidra.org/research/services1/microbiome-service/","inclusionBasis":"Current national-scale enabling platform explicitly offering microbial sequencing and computational genomics rather than an isolated laboratory assay.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"This is infrastructure, not a single cohort. The Sidra service page is primary evidence for capabilities; QNA-derived coverage supplies the dated launch milestone.","sources":[{"id":"public:qa-sidra-microbiome-service:s01","type":"primary record source","rank":1,"url":"https://www.sidra.org/research/services1/microbiome-service/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-sidra-microbiome-service:s02","type":"additional record source","rank":2,"url":"https://www.sidra.org/news/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-sidra-microbiome-service:s03","type":"additional record source","rank":3,"url":"https://www.gulf-times.com/article/728192/qatar/sidra-medicine-launches-specialized-microbiome-service-to-advance-precision-care-for-women-and-children/amp","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"qa-sidra-pediatric-oncology-qatar","name":"Sidra Pediatric Oncology Qatar","displayTitle":"Sidra Pediatric Oncology Qatar","aliases":["SPOQ","SPOQ Translational Research Program"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Qatar national pediatric cancer catchment with regional cohort expansion","projectType":"precision-oncology program, registry, and biorepository","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"pediatric cancer genomics and precision medicine","organismPopulation":"Children with suspected or diagnosed cancer","leadOrganizations":["Sidra Medicine"],"partnerOrganizations":["Children's Oncology Group","International Society of Paediatric Oncology","regional institutions in Pakistan, Jordan, and Turkey"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Sidra's current program page describes ongoing molecular profiling, an active pediatric cancer registry/biorepository, annual reports, and a pharmacogenomics trial.","statusEvidenceDate":"2026-08-15","description":"National pediatric precision-oncology program pairing tumor and germline multi-omics with a registry, biorepository, rapid genomic profiling, pharmacogenomics, and experimental therapies.","scaleSummary":"Expected 35-50 children per year, roughly half of Qatar's pediatric cancer cases; current focus includes acute lymphoblastic leukemia and central-nervous-system tumors.","dataTypes":["tumor whole-genome sequencing","germline sequencing","whole-transcriptome sequencing","epigenetic profiling","long reads","spatial/single-cell assays","liquid biopsy","clinical registry","biospecimens","pharmacogenomics"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical/research program; annual aggregate precision-oncology reports are public, participant-level data controlled.","primarySourceUrl":"https://www.sidra.org/research/divisions/translational-research-programs/sidra-pediatric-oncology-qatar-spoq/","inclusionBasis":"National, continuously recruited cancer-genomics cohort with durable registry and biorepository infrastructure.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"SPOQ's registry, biorepository, eGOP workflow, and PGx trial are treated as one program rather than separate records.","sources":[{"id":"public:qa-sidra-pediatric-oncology-qatar:s01","type":"primary record source","rank":1,"url":"https://www.sidra.org/research/divisions/translational-research-programs/sidra-pediatric-oncology-qatar-spoq/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-watch-wastewater-one-health","name":"WATCH: An Integrated Platform for Wastewater Surveillance towards One Health Intelligence in Qatar","displayTitle":"WATCH: An Integrated Platform for Wastewater Surveillance towards One Health Intelligence in Qatar","aliases":["WATCH","Wastewater Surveillance of Emerging Pathogens and Antimicrobial Resistance in Qatar"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National wastewater, sewage, treated effluent, receiving water, and soil environments","projectType":"One Health metagenomic surveillance platform","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"pathogen metagenomics, antimicrobial resistance, and environmental health","organismPopulation":"Wastewater microbial communities, emerging pathogens, zoonotic threats, and antimicrobial-resistance genes","leadOrganizations":["Hamad Bin Khalifa University Qatar Environment and Energy Research Institute"],"partnerOrganizations":["Weill Cornell Medicine-Qatar","HBKU Genomics Core Labs"],"startYear":2025,"endYear":2027,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"HBKU's project registry lists WATCH as active from 1 January 2025 through 31 December 2027 under award QEE314-WATWQ-0125-WBS-014.","statusEvidenceDate":"2026-08-15","description":"Multimodal platform combining metagenomics and contaminant measurement for near-real-time detection of emerging pathogens, zoonotic threats, microbial ecology, and AMR across Qatar's water cycle.","scaleSummary":"Three-year applied-research project; public sampling totals not yet reported.","dataTypes":["shotgun metagenomics","targeted qPCR","AMR genes","microbial community profiles","wastewater chemistry","PFAS","microplastics","pharmaceuticals"],"accessionIds":["QEE314-WATWQ-0125-WBS-014","QEERI-CORE-000014"],"identifiers":[{"scheme":"Other","value":"QEE314-WATWQ-0125-WBS-014"},{"scheme":"Other","value":"QEERI-CORE-000014"}],"dataAccess":"Project-specific; no public sequence release yet identified.","primarySourceUrl":"https://elmi.hbku.edu.qa/en/projects/watch-an-integrated-platform-for-wastewater-surveillance-towards-/","inclusionBasis":"Named, funded national metagenomic surveillance platform with explicit dates and One Health scope.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Successor in capability to the COVID-era wastewater project but broader in pathogens, AMR, contaminants, and environmental compartments.","sources":[{"id":"public:qa-watch-wastewater-one-health:s01","type":"primary record source","rank":1,"url":"https://elmi.hbku.edu.qa/en/projects/watch-an-integrated-platform-for-wastewater-surveillance-towards-/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-watch-wastewater-one-health:s02","type":"additional record source","rank":2,"url":"https://www.hbku.edu.qa/en/qeeri/water-center/water-quality","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"qa-wellness-lifestyle-genomic-reports","name":"QPHI Wellness and Lifestyle Initiative","displayTitle":"QPHI Wellness and Lifestyle Initiative","aliases":["Genomic Wellness and Lifestyle Reports"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"National QPHI participant cohort","projectType":"participant genomic feedback program","domainGroup":"Human health and population genomics","researchDomain":"consumer-facing genomics, wellness, and genetic education","organismPopulation":"QPHI participants","leadOrganizations":["Qatar Precision Health Institute"],"partnerOrganizations":["QPHI healthcare and community stakeholders"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"QPHI's current page states that the institute has started returning personalized wellness and lifestyle reports.","statusEvidenceDate":"2026-08-15","description":"Returns non-diagnostic genetic predisposition information with education and counseling to help participants understand wellness and lifestyle traits.","scaleSummary":"Reports cover 29 traits across exercise, food reaction, body/weight, metabolic health, and diet response; recipient count not public.","dataTypes":["polygenic/trait variants","participant reports","genetic counseling"],"accessionIds":[],"identifiers":[],"dataAccess":"Personalized reports to participants; no public participant data.","primarySourceUrl":"https://www.qphi.org.qa/wellness-and-lifestyle-initiative","inclusionBasis":"Named national translational genomics service returning population-research insights to participants.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"QGP/QPHI downstream service, not a new cohort.","sources":[{"id":"public:qa-wellness-lifestyle-genomic-reports:s01","type":"primary record source","rank":1,"url":"https://www.qphi.org.qa/wellness-and-lifestyle-initiative","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"qa-whale-shark-research-edna","name":"Qatar Whale Shark Research Project","displayTitle":"Qatar Whale Shark Research Project","aliases":["Qatar Whale Shark Research","Qatar Whale Shark Project"],"countries":["Qatar"],"regionLabel":"Qatar","geographicScope":"Al Shaheen region and northeastern offshore waters of Qatar","projectType":"longitudinal wildlife monitoring project with conservation-genomics and eDNA components","domainGroup":"Environmental and microbial genomics","researchDomain":"marine conservation, population genetics and environmental DNA","organismPopulation":"whale shark (Rhincodon typus) aggregation and associated marine environmental DNA","leadOrganizations":["Qatar Ministry of Environment"],"partnerOrganizations":["Maersk Oil Qatar","Heriot-Watt University","University of Copenhagen","Natural History Museum of Denmark","NAUI research divers"],"startYear":2010,"endYear":null,"lifecycleStatus":"active or recurrent monitoring program","lifecycleGroup":"Active / operational","statusBasis":"Visit Qatar's current wildlife page continues to describe the project and its database, while annual whale-shark monitoring and viewing activity remained documented in 2025-2026.","statusEvidenceDate":"2026-08-15","description":"A long-term study of Qatar's exceptionally large seasonal whale-shark aggregation using photo-identification, satellite tracking, tissue/DNA sampling and seawater eDNA; genomics papers demonstrated population inference from mitochondrial and genome-scale target capture of environmental DNA.","scaleSummary":"More than 600 individually identified whale sharks in the project database, with aggregations of up to roughly 300 animals; eDNA studies recovered aggregation-level mitochondrial haplotypes and later genome-scale target-capture data from Qatar seawater.","dataTypes":["photo-identification","satellite telemetry","tissue DNA","seawater environmental DNA","mitochondrial sequencing","target-capture sequencing","population genetics"],"accessionIds":[],"identifiers":[],"dataAccess":"Summary statistics and methods are published; the photo-ID database and underlying project samples are not documented as open access.","primarySourceUrl":"https://visitqatar.com/intl-en/about-qatar/wildlife/whale-sharks","inclusionBasis":"Named, longitudinal, multi-animal national monitoring resource with explicit tissue-DNA and reusable seawater-eDNA population-genomics outputs.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Genomics is one component of a broader ecological monitoring project. The current official page does not state a formal operational end date or expose the underlying identification database.","sources":[{"id":"public:qa-whale-shark-research-edna:s01","type":"primary record source","rank":1,"url":"https://visitqatar.com/intl-en/about-qatar/wildlife/whale-sharks","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-whale-shark-research-edna:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41559-016-0004","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-whale-shark-research-edna:s03","type":"additional record source","rank":3,"url":"https://onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.13293","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-whale-shark-research-edna:s04","type":"additional record source","rank":4,"url":"https://www.naui.org/qatar-whale-shark-research/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:qa-whale-shark-research-edna:s05","type":"additional record source","rank":5,"url":"https://visitqatar.com/intl-en/events-calendar/whale-shark-season","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":5},{"id":"sa-adult-genomics-group","name":"Saudi Adult Genomics Group National Adult Cohort","displayTitle":"Saudi Adult Genomics Group National Adult Cohort","aliases":["Saudi Multisite Adult Genomic-Medicine Cohort"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Adults and families from all regions of Saudi Arabia","projectType":"National multisite clinical-genomics consortium cohort","domainGroup":"Human health and population genomics","researchDomain":"Adult Mendelian disease and clinical genomics","organismPopulation":"Saudi adults with suspected genetic disorders from 2,529 families","leadOrganizations":["Saudi Adult Genomics Group","Lifera Omics","King Abdullah International Medical Research Center (KAIMRC)"],"partnerOrganizations":["Ministry of National Guard Health Affairs","King Saud bin Abdulaziz University for Health Sciences","King Faisal Specialist Hospital & Research Centre","Saudi universities and hospitals"],"startYear":null,"endYear":2025,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The multisite cohort and diagnostic landscape were published in 2025; continuation of the consortium has not yet been documented.","statusEvidenceDate":"2025-09-29","description":"Characterized the diagnostic spectrum of Mendelian disease presenting in Saudi adulthood across a national clinical network.","scaleSummary":"2,763 adults from 2,529 families: 2,202 exomes and 561 genomes; 38.9% diagnostic yield across 535 Mendelian genes.","dataTypes":["whole-exome sequencing","whole-genome sequencing","clinical phenotypes"],"accessionIds":[],"identifiers":[],"dataAccess":"Not stated; multisite clinical/controlled","primarySourceUrl":"https://link.springer.com/article/10.1186/s13073-025-01529-2","inclusionBasis":"Named national consortium and large multisite adult WES/WGS cohort with a peer-reviewed project paper.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Potential overlap with institutional referral databases and the Lifera/CENTOGENE biodatabank is not disclosed.","sources":[{"id":"public:sa-adult-genomics-group:s01","type":"primary record source","rank":1,"url":"https://link.springer.com/article/10.1186/s13073-025-01529-2","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-adult-genomics-group:s02","type":"additional record source","rank":2,"url":"https://pubmed.ncbi.nlm.nih.gov/41024252/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-baby-genome","name":"National Whole Genome Sequencing Program for Newborns","displayTitle":"National Whole Genome Sequencing Program for Newborns","aliases":["Baby Genome Program","National Baby Genome"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Planned newborn cohort across all 13 Saudi regions","projectType":"Funded newborn whole-genome sequencing project","domainGroup":"Human health and population genomics","researchDomain":"Rare-disease early detection and newborn genomics","organismPopulation":"1,000 geographically representative Saudi newborns","leadOrganizations":["King Salman Center for Disability Research"],"partnerOrganizations":["King Saud bin Abdulaziz University for Health Sciences","Alinma Bank"],"startYear":2025,"endYear":null,"lifecycleStatus":"funded","lifecycleGroup":"Planned / proposed","statusBasis":"A SAR 6 million funding/agreement announcement was issued on 2025-06-30; no recruitment or results were located by verification.","statusEvidenceDate":"2025-06-30","description":"Plans whole-genome sequencing of newborns to identify genetic anomalies early and build a geographically representative national neonatal database.","scaleSummary":"Planned 1,000 newborns across all 13 regions; SAR 6 million announced funding.","dataTypes":["whole-genome sequencing","newborn phenotypes","geographic metadata"],"accessionIds":[],"identifiers":[],"dataAccess":"No released data; governance not yet stated","primarySourceUrl":"https://www.kscdr.org.sa/en/news/3826","inclusionBasis":"Officially funded national newborn WGS project with an explicit 1,000-newborn, 13-region design.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from conventional national newborn screening. Relationship to the KFSHRC-Rady platform is not stated. Planned counts are not enrollment.","sources":[{"id":"public:sa-baby-genome:s01","type":"primary record source","rank":1,"url":"https://www.kscdr.org.sa/en/news/3826","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-baby-genome:s02","type":"additional record source","rank":2,"url":"https://alinma.com/en/About-the-Bank/The-Bank/News/2025/6/Genome-Research","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-cardiometabolic-prs-cohort","name":"Saudi Cardiometabolic Genomics and Polygenic Risk Cohort","displayTitle":"Saudi Cardiometabolic Genomics and Polygenic Risk Cohort","aliases":["KFSHRC Saudi Cardiometabolic PRS Cohort","RAC#2190011"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"All five Saudi regions plus a 28-tribe population reference cohort","projectType":"Case-reference genomics cohort","domainGroup":"Human health and population genomics","researchDomain":"Cardiometabolic genetics and polygenic risk","organismPopulation":"Saudi cardiology patients and population reference participants from 28 tribes","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":["King Abdullah University of Science and Technology (KAUST)","Massachusetts General Hospital","Broad Institute"],"startYear":null,"endYear":2023,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"Primary analysis and 26 PGS Catalog score entries were published on 2023-10-18.","statusEvidenceDate":"2023-10-18","description":"Assessed population structure and portability of polygenic scores for ten cardiometabolic traits in a large Saudi dataset.","scaleSummary":"5,399 cardiology patients plus 1,017 population-reference participants; 6,416 passed quality control; approximately 8.47 million imputed variants.","dataTypes":["genotyping array","imputed variants","polygenic scores","cardiometabolic phenotypes"],"accessionIds":["RAC#2190011","PGS003866-PGS003891"],"identifiers":[{"scheme":"Other","value":"RAC#2190011"},{"scheme":"Other","value":"PGS003866-PGS003891"}],"dataAccess":"Summary scores public; individual-level data controlled/not publicly posted","primarySourceUrl":"https://www.nature.com/articles/s41467-023-41985-1","inclusionBasis":"Large, geographically broad Saudi genomics cohort with peer-reviewed analysis and deposited PGS outputs.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Descriptive Atlas name because the paper does not assign a unique branded project name. The KFSHRC sample likely overlaps other cardiovascular/MI studies; exact crosswalk is not public.","sources":[{"id":"public:sa-cardiometabolic-prs-cohort:s01","type":"primary record source","rank":1,"url":"https://www.nature.com/articles/s41467-023-41985-1","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-cardiometabolic-prs-cohort:s02","type":"additional record source","rank":2,"url":"https://www.pgscatalog.org/publication/PGP000519/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-covid-national-genomic-surveillance","name":"COVID-19 National Genomic Surveillance Program","displayTitle":"COVID-19 National Genomic Surveillance Program","aliases":["Saudi SARS-CoV-2 National Genomic Surveillance"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Nationwide Saudi SARS-CoV-2 surveillance linked to IISS","projectType":"National pathogen-genomic surveillance child program","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"SARS-CoV-2 variants and outbreak surveillance","organismPopulation":"SARS-CoV-2-positive respiratory specimens from Saudi Arabia","leadOrganizations":["Saudi Public Health Authority / Weqaya","Saudi Ministry of Health"],"partnerOrganizations":["Saudi Integrated Influenza Sentinel Surveillance System"],"startYear":2020,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"WHO explicitly identified the named national genomic-surveillance program as part of IISS and active variant monitoring in December 2022.","statusEvidenceDate":"2022-12-13","description":"Sequences and tracks SARS-CoV-2 lineages and emerging variants within Saudi Arabia's integrated respiratory surveillance architecture.","scaleSummary":"No authoritative unduplicated national genome count is reported in the cited official source.","dataTypes":["SARS-CoV-2 whole-genome sequencing","variant surveillance","epidemiologic metadata"],"accessionIds":[],"identifiers":[],"dataAccess":"Public-health surveillance; selected sequences may be shared internationally","primarySourceUrl":"https://www.who.int/news/item/13-12-2022-a-saudi-arabian-journey-in-influenza-surveillance","inclusionBasis":"Explicitly named national pathogen-genomics program in an authoritative WHO account.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Child/linked program of IISS. KAUST R3T and institutional sequencing cohorts likely contributed or ran in parallel, but exact sample lineage is unreported; counts must not be summed. Current status after 2022 was not independently verified.","sources":[{"id":"public:sa-covid-national-genomic-surveillance:s01","type":"primary record source","rank":1,"url":"https://www.who.int/news/item/13-12-2022-a-saudi-arabian-journey-in-influenza-surveillance","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-crc-molecular-signatures","name":"Molecular Signatures of Saudi Colorectal Cancer","displayTitle":"Molecular Signatures of Saudi Colorectal Cancer","aliases":["KFSHRC Saudi CRC Molecular Signatures Cohort"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"KFSHRC Saudi colorectal cancer cohort","projectType":"Tumor evolution and multi-region sequencing cohort","domainGroup":"Human health and population genomics","researchDomain":"Colorectal cancer genomics","organismPopulation":"Saudi colorectal cancer patients with primary and metastatic tumor tissue","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":[],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The official page describes a planned 200-patient expansion; peer-reviewed Saudi CRC exome outputs demonstrate that sequencing has begun.","statusEvidenceDate":"2026-08-15","description":"Profiles spatial and evolutionary genomic heterogeneity across primary colorectal tumors and metastases in Saudi patients.","scaleSummary":"Planned multi-region whole-exome sequencing in 200 patients; published precursor work includes exome data and a 30-patient, 191-tumor-region series.","dataTypes":["multi-region whole-exome sequencing","tumor phylogenetics","clinicopathologic data"],"accessionIds":[],"identifiers":[],"dataAccess":"Not stated; institutional/controlled","primarySourceUrl":"https://www.kfshrc.edu.sa/en/research/projects/kh-molecular-signatures-of-saudi-colorectal-cancer","inclusionBasis":"Named continuing tumor-genomics cohort with a planned 200-patient series and peer-reviewed outputs.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from early-detection projects PROCSA and the Elkum multi-omics study, although institutional patient or laboratory overlap is possible.","sources":[{"id":"public:sa-crc-molecular-signatures:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/research/projects/kh-molecular-signatures-of-saudi-colorectal-cancer","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-crc-molecular-signatures:s02","type":"additional record source","rank":2,"url":"https://pubmed.ncbi.nlm.nih.gov/35907983/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-diseasome","name":"Saudi/Arab Diseasome Project","displayTitle":"Saudi/Arab Diseasome Project","aliases":["Saudi Arab Diseasome Project"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"National and KFSHRC-based Saudi disease cohorts","projectType":"Multi-disease research program","domainGroup":"Human health and population genomics","researchDomain":"Cancer, cardiovascular, neurological and systems genomics","organismPopulation":"Saudi patients across major noncommunicable diseases","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":["King Abdulaziz City for Science and Technology (KACST)","Harvard T.H. Chan School of Public Health"],"startYear":2013,"endYear":2016,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The official project page identifies KACST/NSTIP funding for 2013-2016 and reports more than 50 peer-reviewed publications.","statusEvidenceDate":"2016-12-31","description":"Integrated genomic, transcriptomic and proteomic datasets to identify disease networks and biomarkers across cancer, cardiovascular and neurological disorders in Saudi/Arab populations.","scaleSummary":"More than 50 peer-reviewed publications reported; participant count is not stated on the official page.","dataTypes":["genomics","transcriptomics","proteomics","network medicine"],"accessionIds":["RAC#2110006"],"identifiers":[{"scheme":"Other","value":"RAC#2110006"}],"dataAccess":"Not stated; institutional/controlled","primarySourceUrl":"https://www.kfshrc.edu.sa/en/research/projects/di-saudi-arab-diseasome-project","inclusionBasis":"Named, externally funded, multi-year program with a large publication portfolio.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Historical precursor/related program, not a documented former name, of the Saudi/Arab Cancerome Initiative. Do not merge automatically.","sources":[{"id":"public:sa-diseasome:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/research/projects/di-saudi-arab-diseasome-project","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-genalive-nupco-testing","name":"NUPCO-Genalive Centralized Genetic Testing Project","displayTitle":"NUPCO-Genalive Centralized Genetic Testing Project","aliases":["NPT0012/24","Genalive National Centralized Laboratory Testing Contract"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Approximately 83 Saudi government, military and university hospitals","projectType":"National centralized diagnostic-genomics infrastructure contract","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Clinical genomics, reproductive genomics, hereditary cancer and cytogenetics","organismPopulation":"Patients tested through Saudi public-sector hospitals","leadOrganizations":["National Unified Procurement Company (NUPCO)","Genalive Medical Company"],"partnerOrganizations":["BGI Genomics","Arabian International Healthcare Holding Company / Tibbiyah"],"startYear":2025,"endYear":2028,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Tender award announced on 2025-03-12 for a three-year centralized testing project.","statusEvidenceDate":"2025-03-12","description":"Provides centralized genomic, reproductive and pathology testing to a large network of Saudi public hospitals.","scaleSummary":"933,782 tests, described as serving nearly one million patients across about 83 institutions; contract value SAR 493.4 million.","dataTypes":["whole-genome sequencing","whole-exome sequencing","monogenic panels","NIPT","hereditary-cancer testing","preimplantation genetic testing","cytogenetics","Sanger sequencing"],"accessionIds":["NPT0012/24"],"identifiers":[{"scheme":"Other","value":"NPT0012/24"}],"dataAccess":"Clinical/commercial; no research dataset access stated","primarySourceUrl":"https://www.saudiexchange.sa/wps/portal/saudiexchange/newsandreports/issuer-news/issuer-announcements/issuer-announcements-details/?anCat=1&anId=85741&cs=9530&locale=en","inclusionBasis":"National-scale genomics infrastructure with an authoritative procurement award, explicit multi-year term and nearly one-million-test scope.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Diagnostic service infrastructure rather than one research cohort. Test count is contracted volume and should not be interpreted as unique sequenced genomes. Genalive is separate from Lifera Omics.","sources":[{"id":"public:sa-genalive-nupco-testing:s01","type":"primary record source","rank":1,"url":"https://www.saudiexchange.sa/wps/portal/saudiexchange/newsandreports/issuer-news/issuer-announcements/issuer-announcements-details/?anCat=1&anId=85741&cs=9530&locale=en","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-genalive-nupco-testing:s02","type":"additional record source","rank":2,"url":"https://www.bgi.com/global/news/bgi-genomics-joint-venture-genalive-secures-950-million-rmb-genetic-testing-service-contract-in-saudi-arabia","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-genesis-masld","name":"Genomics and Environmental Noninvasive Evaluation for Saudi Intrahepatic Steatosis","displayTitle":"Genomics and Environmental Noninvasive Evaluation for Saudi Intrahepatic Steatosis","aliases":["GENESIS"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia; KFSHRC and Ministry of Defense Health Services","projectType":"National longitudinal multi-omics cohort","domainGroup":"Human health and population genomics","researchDomain":"Metabolic dysfunction-associated steatotic liver disease","organismPopulation":"Saudi adults with or at risk of MASLD","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":["Ministry of Defense Health Services"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The current official project page reports that approximately 3,000 participants have already been enrolled and describes continuing substudies.","statusEvidenceDate":"2026-08-15","description":"Combines lifestyle and environmental exposure data, FibroScan phenotyping, genomics and other omics to define MASLD risk and progression in Saudis.","scaleSummary":"Approximately 3,000 enrolled; described by KFSHRC as the largest MASLD study in the Middle East.","dataTypes":["genomics","metabolomics","proteomics","lipidomics","FibroScan","clinical and lifestyle data"],"accessionIds":[],"identifiers":[],"dataAccess":"Not stated; cohort resource/controlled","primarySourceUrl":"https://www.kfshrc.edu.sa/en/research/projects/sq-genesis","inclusionBasis":"Named, already-enrolled multi-omics cohort of national relevance and major scale.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The official page does not report a launch year or public accession.","sources":[{"id":"public:sa-genesis-masld:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/research/projects/sq-genesis","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-genetic-disease-registry","name":"National Health Registry for Genetic Diseases and Congenital Anomalies","displayTitle":"National Health Registry for Genetic Diseases and Congenital Anomalies","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Nationwide Saudi health system","projectType":"National public-health registry","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Genetic disease and congenital-anomaly surveillance","organismPopulation":"Saudi patients recorded with genetic diseases or congenital anomalies","leadOrganizations":["Saudi Health Council","National Center for Health Information"],"partnerOrganizations":[],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The Saudi Health Council lists it among established national registries on its achievements page; public operational metrics are not provided.","statusEvidenceDate":"2023-12-31","description":"National registry infrastructure for surveillance and health-system planning around genetic diseases and congenital anomalies.","scaleSummary":"Public case count and genomic data types are not disclosed; the same official list also names a National Newborn Registry.","dataTypes":["registry diagnoses","congenital-anomaly records","health-system metadata"],"accessionIds":[],"identifiers":[],"dataAccess":"Government registry; public access not stated","primarySourceUrl":"https://shc.gov.sa/ar/AboutCouncil/Pages/Achievements.aspx","inclusionBasis":"Official national inherited-disease registry infrastructure relevant to cohort discovery and public-health genomics.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Registry rather than a sequencing project; it may receive data from newborn and clinical-genetics programs.","sources":[{"id":"public:sa-genetic-disease-registry:s01","type":"primary record source","rank":1,"url":"https://shc.gov.sa/ar/AboutCouncil/Pages/Achievements.aspx","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-hajj-wastewater-amr","name":"Hajj and Ramadan Mass-Gathering Wastewater AMR Metagenomics Initiative","displayTitle":"Hajj and Ramadan Mass-Gathering Wastewater AMR Metagenomics Initiative","aliases":["Makkah Mass-Gathering Wastewater Resistome Study"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Four mass-gathering-affected wastewater plants and one control plant in the Makkah region","projectType":"Longitudinal wastewater metagenomics cohort","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Antimicrobial resistance, mass gatherings and environmental pathogen genomics","organismPopulation":"Municipal wastewater microbiomes and cultured resistant bacteria across Hajj and Ramadan periods","leadOrganizations":["King Abdullah University of Science and Technology (KAUST)","Umm Al-Qura University"],"partnerOrganizations":[],"startYear":2020,"endYear":2022,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"Sampling ran July 2020-August 2022 across three Hajj and two Ramadan periods; integrated results were published on 2025-06-11.","statusEvidenceDate":"2025-06-11","description":"Tracked wastewater resistomes and mobile resistance elements across mass-gathering periods to identify introductions and persistence associated with pilgrim influxes.","scaleSummary":"185 sewage samples; 4,329 metagenome-assembled genomes, including 2,622 with ARGs; 43 cultured MBL/ESBL isolates characterized with long reads.","dataTypes":["shotgun metagenomics","metagenome-assembled genomes","Oxford Nanopore isolate sequencing","AMR phenotypes","wastewater metadata"],"accessionIds":[],"identifiers":[],"dataAccess":"Publication-linked data and institutional repository record; accession details in paper","primarySourceUrl":"https://repository.kaust.edu.sa/items/84719cc1-ca50-481c-ab2b-e230b6d1a4e9","inclusionBasis":"Multi-year, multi-site Saudi mass-gathering metagenomics initiative with hundreds of samples and thousands of reconstructed genomes.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Completed research initiative/dataset rather than a permanent national surveillance program.","sources":[{"id":"public:sa-hajj-wastewater-amr:s01","type":"primary record source","rank":1,"url":"https://repository.kaust.edu.sa/items/84719cc1-ca50-481c-ab2b-e230b6d1a4e9","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-hajj-wastewater-amr:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s44221-025-00446-3","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-hcgr","name":"Human Cancer Genomic Research Program","displayTitle":"Human Cancer Genomic Research Program","aliases":["HCGR"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"KFSHRC national referral population","projectType":"Cancer genomics umbrella program and infrastructure","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Precision oncology and cancer genome research","organismPopulation":"Saudi patients with prevalent cancers","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":["International Cancer Genome Consortium"],"startYear":2012,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The program led the 2012 Saudi ICGC thyroid launch, was described as integral to ICGC in 2014, and its leadership and projects remain current on KFSHRC pages.","statusEvidenceDate":"2026-08-15","description":"Provides sequencing, bioinformatics and biospecimen infrastructure for discovery and validation across cancers prevalent in Saudi Arabia.","scaleSummary":"Umbrella program; no single unduplicated participant total is published.","dataTypes":["tumor sequencing","bioinformatics","biospecimens","clinical annotation"],"accessionIds":[],"identifiers":[],"dataAccess":"Project-specific; generally controlled","primarySourceUrl":"https://services.kfshrc.edu.sa/external/en/home/research/departments/humancancergenomic","inclusionBasis":"Long-running institutional cancer-genomics program that generated multiple named national cohorts and ICGC participation.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Parent/umbrella of several project records, including PTC-SA and KFSHRC cancer cohorts. Do not add umbrella and child sample counts. Start year is earliest independently evidenced program activity, not a stated founding year.","sources":[{"id":"public:sa-hcgr:s01","type":"primary record source","rank":1,"url":"https://services.kfshrc.edu.sa/external/en/home/research/departments/humancancergenomic","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-hcgr:s02","type":"additional record source","rank":2,"url":"https://www.kfshrc.edu.sa/en/research/staff-listing/khawla-sami-alkuraya","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-healthy-marriage","name":"Healthy Marriage Program","displayTitle":"Healthy Marriage Program","aliases":["Premarital Screening Program"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Nationwide Saudi couples planning marriage","projectType":"Population carrier-screening and public-health program","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Hemoglobinopathies and infectious-disease prevention","organismPopulation":"Couples planning marriage in Saudi Arabia","leadOrganizations":["Saudi Ministry of Health"],"partnerOrganizations":[],"startYear":2004,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Launched in 2004; the Ministry of Health introduced an electronic service in 2020 and maintains a current service page.","statusEvidenceDate":"2026-08-15","description":"Screens couples before marriage for sickle-cell disease and beta-thalassemia carrier/affected status, alongside hepatitis B/C and HIV.","scaleSummary":"National service; current unduplicated participant count is not disclosed on the cited service page.","dataTypes":["hematology","hemoglobinopathy carrier testing","serology"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical public-health service; individual data not public","primarySourceUrl":"https://www.moh.gov.sa/en/eservices/pages/premarital-screening.aspx","inclusionBasis":"Named nationwide inherited-disease screening program included as public-health genetics context.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Mostly hematology/serology rather than sequencing. A reported 2024 sequencing pilot was not included because no authoritative outcome source was located.","sources":[{"id":"public:sa-healthy-marriage:s01","type":"primary record source","rank":1,"url":"https://www.moh.gov.sa/en/eservices/pages/premarital-screening.aspx","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-healthy-marriage:s02","type":"additional record source","rank":2,"url":"https://www.moh.gov.sa/en/ministry/mediacenter/news/pages/news-2020-11-01-005.aspx","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-influenza-iiss","name":"Saudi Integrated Influenza Sentinel Surveillance System","displayTitle":"Saudi Integrated Influenza Sentinel Surveillance System","aliases":["IISS","Saudi National Influenza Centre","Integrated Influenza Surveillance System"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Nationwide sentinel network of 100 sites, including 30 hospitals and 70 primary-health-care centers","projectType":"National respiratory-virus genomic surveillance program","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Influenza and respiratory pathogen surveillance","organismPopulation":"Respiratory specimens from Saudi patients with influenza-like illness or severe acute respiratory infection","leadOrganizations":["Saudi Public Health Authority / Weqaya","Saudi Ministry of Health"],"partnerOrganizations":["World Health Organization Global Influenza Surveillance and Response System"],"startYear":2017,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Sentinel surveillance began in 2017 and expanded; IISS launched in 2022 at 100 sites, and WHO recognized the Weqaya laboratory as Saudi Arabia's National Influenza Centre in March 2022.","statusEvidenceDate":"2022-12-13","description":"Collects nationwide respiratory samples and epidemiologic data, with central molecular subtyping and genetic sequencing for strain monitoring and international sharing.","scaleSummary":"Expanded from 15 sentinel sites in six health regions in 2017 to 50 sites in 20 health regions in 2021 and 100 IISS sites in 2022.","dataTypes":["RT-PCR","influenza subtyping","viral genome sequencing","sentinel epidemiology"],"accessionIds":[],"identifiers":[],"dataAccess":"Public-health surveillance; selected sequences shared through WHO/GISRS systems","primarySourceUrl":"https://www.who.int/news/item/13-12-2022-a-saudi-arabian-journey-in-influenza-surveillance","inclusionBasis":"Named nationwide respiratory surveillance system with explicit sequencing workflow, site expansion and WHO National Influenza Centre designation.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Operational status is directly evidenced through December 2022; a later public program update was not located. The 20 regions are surveillance/health regions, not Saudi administrative regions.","sources":[{"id":"public:sa-influenza-iiss:s01","type":"primary record source","rank":1,"url":"https://www.who.int/news/item/13-12-2022-a-saudi-arabian-journey-in-influenza-surveillance","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-kaimrc-biobank","name":"Saudi Biobank","displayTitle":"Saudi Biobank","aliases":["KAIMRC Saudi Biobank"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"National Saudi population, common and rare disease cohorts and population controls","projectType":"National population biobank","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Precision health, population genomics and translational medicine","organismPopulation":"Saudi participants with common or rare diseases and population controls","leadOrganizations":["King Abdullah International Medical Research Center (KAIMRC)"],"partnerOrganizations":["Ministry of National Guard Health Affairs","King Saud bin Abdulaziz University for Health Sciences"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The biobank had active recruitment/holdings reported in 2024 and announced ISO 20387 accreditation in May 2025.","statusEvidenceDate":"2025-05-01","description":"National biospecimen and linked phenotype resource supporting disease research, precision medicine and population-health studies.","scaleSummary":"Long-term target of 200,000 participants; 53,338 participants and 589,461 biospecimens reported by mid-2024.","dataTypes":["biospecimens","linked clinical and phenotype data","genomics-ready samples"],"accessionIds":[],"identifiers":[],"dataAccess":"Application/controlled biobank access","primarySourceUrl":"https://www.biobanking.org/biobanks/view/462","inclusionBasis":"Large national biobank with more than 50,000 participants, published operational profile and international accreditation.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from the Saudi Public Health Authority National Biobank despite similar national naming.","sources":[{"id":"public:sa-kaimrc-biobank:s01","type":"primary record source","rank":1,"url":"https://www.biobanking.org/biobanks/view/462","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kaimrc-biobank:s02","type":"additional record source","rank":2,"url":"https://pubmed.ncbi.nlm.nih.gov/41549576/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kaimrc-biobank:s03","type":"additional record source","rank":3,"url":"https://mngha.med.sa/english/mediacenter/news/pages/saudi-accreditation-awards.aspx","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"sa-kaust-r3t-covid","name":"KAUST Rapid Research Response Team COVID-19 Genomics Program","displayTitle":"KAUST Rapid Research Response Team COVID-19 Genomics Program","aliases":["R3T COVID-19","KAUST COVID-19 Genomic Surveillance"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi clinical sites and national/global SARS-CoV-2 reference data","projectType":"Pandemic pathogen-genomics research program","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"SARS-CoV-2 genomic epidemiology and wastewater surveillance","organismPopulation":"Saudi SARS-CoV-2 clinical isolates and municipal wastewater","leadOrganizations":["King Abdullah University of Science and Technology (KAUST)"],"partnerOrganizations":["Saudi Public Health Authority / former Saudi CDC","Saudi Ministry of Health","University of Oxford","Saudi hospitals","King Abdulaziz City for Science and Technology"],"startYear":2020,"endYear":2022,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"R3T was formed in 2020; its principal Saudi genomic-epidemiology paper appeared in 2022 and the linked wastewater monitoring series ran through 2022.","statusEvidenceDate":"2022-12-31","description":"Built a Saudi SARS-CoV-2 genome tracker, sequenced clinical isolates and developed wastewater monitoring and bioinformatic resources during the pandemic.","scaleSummary":"Peer-reviewed study sequenced 892 Saudi genomes from March-August 2020; the tracker held about 90,000 global genomes including more than 500 Saudi genomes by August 2020; an announced plan targeted more than 2,000 Saudi isolates.","dataTypes":["SARS-CoV-2 whole-genome sequencing","phylogenetics","genomic dashboard","wastewater surveillance"],"accessionIds":[],"identifiers":[],"dataAccess":"Publication-linked sequence data and aggregate tracker outputs; accessions are study-specific","primarySourceUrl":"https://www.kaust.edu.sa/en/r3t-covid-19","inclusionBasis":"Named, multi-institution pandemic research program with hundreds of sequenced Saudi isolates and continuing wastewater subwork.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Likely contributor/parallel program to national COVID genomic surveillance. Do not sum its sequence counts with national totals. The more-than-2,000 figure was a plan, not confirmed completion.","sources":[{"id":"public:sa-kaust-r3t-covid:s01","type":"primary record source","rank":1,"url":"https://www.kaust.edu.sa/en/r3t-covid-19","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kaust-r3t-covid:s02","type":"additional record source","rank":2,"url":"https://pubmed.ncbi.nlm.nih.gov/35105893/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kaust-r3t-covid:s03","type":"additional record source","rank":3,"url":"https://discovery.kaust.edu.sa/en/article/6346/wastewater-monitoring-in-covid-19-surveillance/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"sa-kfshrc-autism-genetics","name":"KFSHRC Center for Autism Research Genetic Program","displayTitle":"KFSHRC Center for Autism Research Genetic Program","aliases":["Characterizing Genetic Abnormalities in ASD Patients in Saudi Arabia"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"National-referral Saudi autism population at KFSHRC","projectType":"Institutional rare-disease research program","domainGroup":"Human health and population genomics","researchDomain":"Autism and neurodevelopmental genetics","organismPopulation":"Saudi children and families affected by autism spectrum disorder","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC) Center for Autism Research"],"partnerOrganizations":["SABIC"],"startYear":2010,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The center was established in 2010 through a SABIC grant and continues to list a dedicated genetic-abnormalities project.","statusEvidenceDate":"2026-08-15","description":"A continuing autism research program that includes genetic characterization of Saudi ASD patients alongside clinical and behavioral research.","scaleSummary":"No unduplicated genetic-cohort size is stated on the current official page.","dataTypes":["clinical genetics","genomic testing","autism phenotypes"],"accessionIds":[],"identifiers":[],"dataAccess":"Not stated; clinical/institutional","primarySourceUrl":"https://services.kfshrc.edu.sa/en/home/hospitals/riyadh/autismresearch","inclusionBasis":"Named, continuing national-referral program with an explicit human-genetics research stream.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Program-level record because the official page does not disclose the genetics subcohort size or accessions.","sources":[{"id":"public:sa-kfshrc-autism-genetics:s01","type":"primary record source","rank":1,"url":"https://services.kfshrc.edu.sa/en/home/hospitals/riyadh/autismresearch","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-kfshrc-biobank","name":"KFSHRC Biobank Center","displayTitle":"KFSHRC Biobank Center","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"KFSHRC patients and national referral cohorts","projectType":"Institutional clinical biobank and precision-medicine infrastructure","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Cancer, cardiovascular, neurological, aging, diabetes and rare disease","organismPopulation":"KFSHRC patients and Saudi clinical cohorts","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":[],"startYear":2025,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"KFSHRC announced the modernized center in January 2025 as an operational precision-medicine resource.","statusEvidenceDate":"2025-01-01","description":"Stores diverse clinical biospecimens with linked disease and patient data for genomic and precision-medicine research.","scaleSummary":"Designed storage capacity for 10 million biospecimens, including tissue, liquid biopsy and blood derivatives; current holdings are not disclosed.","dataTypes":["tissue","liquid biopsy","blood derivatives","linked clinical data","genomics-ready biospecimens"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled institutional biobank access","primarySourceUrl":"https://www.kfshrc.edu.sa/en/news/2025/01/kfshrc-modernizes-biobank-center-ushering-an-era-of-personalized-medicine","inclusionBasis":"Major institutional biobanking infrastructure explicitly designed for multi-disease genomic and precision-medicine programs.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Ten million is design capacity, not current holdings. Distinct from KAIMRC Saudi Biobank and PHA National Biobank.","sources":[{"id":"public:sa-kfshrc-biobank:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/news/2025/01/kfshrc-modernizes-biobank-center-ushering-an-era-of-personalized-medicine","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-kfshrc-clinical-pgx","name":"KFSHRC Clinical Pharmacogenomics Program","displayTitle":"KFSHRC Clinical Pharmacogenomics Program","aliases":["KFSHRC Pharmacogenetics Program"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"KFSHRC patients, initially cardiology and neurology and later transplant and other specialties","projectType":"Clinical precision-prescribing implementation program","domainGroup":"Human health and population genomics","researchDomain":"Pharmacogenomics","organismPopulation":"Saudi and national-referral KFSHRC patients receiving genotype-guided medicines","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Launched in September/October 2023; KFSHRC reported more than 1,500 patients analyzed and continued specialty expansion in October 2024.","statusEvidenceDate":"2024-10-01","description":"Integrates germline pharmacogenetic testing and clinical decision support into prescribing across multiple specialties.","scaleSummary":"More than 1,500 patients by October 2024; over 70% carried altered function in at least three genes. Initial phase covered six medicines and later expanded.","dataTypes":["pharmacogenetic testing","EHR clinical decision support","medication outcomes"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical service; individual data controlled","primarySourceUrl":"https://www.kfshrc.edu.sa/en/news/2024/10/kfshrc-successfully-conducts-pharmacogenetic-analysis-for-over-1500-patients","inclusionBasis":"Operational clinical-genomics implementation program with an explicit patient scale and prescribing integration.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from the SHGP population-frequency pharmacogenomics cohort; included under KFSHRC's broader Genomic Medicine Center umbrella.","sources":[{"id":"public:sa-kfshrc-clinical-pgx:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/news/2024/10/kfshrc-successfully-conducts-pharmacogenetic-analysis-for-over-1500-patients","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kfshrc-clinical-pgx:s02","type":"additional record source","rank":2,"url":"https://www.globenewswire.com/news-release/2023/10/24/2765656/0/en/King-Faisal-Specialist-Hospital-and-Research-Centre-Announces-Innovative-Clinical-Pharmacogenomics.html","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-kfshrc-fetal-screening","name":"KFSHRC Preventive Fetal Screening Program","displayTitle":"KFSHRC Preventive Fetal Screening Program","aliases":["Prenatal Genetic Screening Program"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Pregnant women and high-risk Saudi families referred to KFSHRC","projectType":"Prenatal and fetal genomic screening program","domainGroup":"Human health and population genomics","researchDomain":"Rare-disease prevention and reproductive genomics","organismPopulation":"Pregnant women, fetuses and high-risk Saudi families","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":[],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"KFSHRC published active program outcomes in February 2025 and described continuing annual family service and disease-panel expansion.","statusEvidenceDate":"2025-02-01","description":"Uses prenatal testing, NGS and noninvasive prenatal testing to identify severe inherited disorders and support reproductive decision-making.","scaleSummary":"1,104 pregnant women reported; tests more than 300 genes and supports about 1,500 families annually, with expansion toward more than 500 additional diseases.","dataTypes":["targeted next-generation sequencing","noninvasive prenatal testing","prenatal diagnostics","family history"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical service; individual data controlled","primarySourceUrl":"https://www.kfshrc.edu.sa/en/news/2025/02/kfshrc-detects-276-fetal-genetic-disorders-through-prenatal-care-saving-sar-360-million-annually","inclusionBasis":"Large, operational genomic screening program with an explicit patient count, gene-panel scope and national-referral role.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The KFSHRC headline reports 276 detected disorders/cases while SPA reports 267, likely a transposition; the description avoids using either as a definitive denominator.","sources":[{"id":"public:sa-kfshrc-fetal-screening:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/news/2025/02/kfshrc-detects-276-fetal-genetic-disorders-through-prenatal-care-saving-sar-360-million-annually","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kfshrc-fetal-screening:s02","type":"additional record source","rank":2,"url":"https://spa.gov.sa/en/N2258764","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-kfshrc-genomic-medicine-center","name":"KFSHRC Genomic Medicine Center of Excellence Integrated Model","displayTitle":"KFSHRC Genomic Medicine Center of Excellence Integrated Model","aliases":["KFSHRC Integrated Genomic Medicine Model","Genomic Medicine Center of Excellence"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"KFSHRC patients and national referrals","projectType":"Institutional genomic-medicine infrastructure and clinical implementation umbrella","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Medical genomics, precision oncology, pharmacogenomics and rare-disease diagnostics","organismPopulation":"KFSHRC patients across clinical specialties","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC) Genomic Medicine Center of Excellence"],"partnerOrganizations":["Global Alliance for Genomics and Health"],"startYear":2011,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The predecessor Medical Genetics Program was established in 2011; the integrated model reported 2022-2024 outcomes in Nature Genetics and KFSHRC in February 2026.","statusEvidenceDate":"2026-02-01","description":"Integrates medical genomics, accredited laboratory testing, computational science/AI and translational genomics into routine care and research.","scaleSummary":"Testing rose from about 22,000 tests in 2022 to more than 44,000 in 2024; more than 5,000 precision-oncology analyses; about 8,000 ClinVar submissions and 3,000 Arab-specific variants reported.","dataTypes":["clinical genome and exome testing","precision-oncology profiling","pharmacogenomics","EHR integration","AI and bioinformatics","ClinVar submissions"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical/controlled; aggregate outcomes and selected ClinVar variants public","primarySourceUrl":"https://www.kfshrc.edu.sa/en/news/2026/02/nature-genetics-highlights-kfshs-integrated-genomic-medicine-model","inclusionBasis":"Nationally significant integrated clinical-genomics infrastructure with independently published operational metrics and continuing expansion.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Umbrella/capacity record. Metrics aggregate child programs such as PGT, fetal screening, pharmacogenomics, oncology and exome services; do not sum them as distinct participants. Start year refers to the predecessor Medical Genetics Program.","sources":[{"id":"public:sa-kfshrc-genomic-medicine-center:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/news/2026/02/nature-genetics-highlights-kfshs-integrated-genomic-medicine-model","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kfshrc-genomic-medicine-center:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41588-026-02513-1","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kfshrc-genomic-medicine-center:s03","type":"additional record source","rank":3,"url":"https://www.kfshrc.edu.sa/en/news/2024/08/kfshrc-achieves-67-reduction-in-whole-genome-sequencing-costs","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kfshrc-genomic-medicine-center:s04","type":"additional record source","rank":4,"url":"https://www.kfshrc.edu.sa/en/news/2026/02/kfsh-joins-prestigious-global-alliance-for-genomics-and-health","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":4},{"id":"sa-kfshrc-metagenomics-reference","name":"KFSHRC Metagenomic Infectious-Disease Diagnostics and National Reference Centre","displayTitle":"KFSHRC Metagenomic Infectious-Disease Diagnostics and National Reference Centre","aliases":["Zero Undiagnosed Infectious Diseases Protocol","National Reference Centre for Metagenomics Research Services"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"KFSHRC patients and hospitals across Saudi Arabia","projectType":"Clinical pathogen-metagenomics program and national reference infrastructure","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Infectious-disease diagnostics, outbreak response and antimicrobial resistance","organismPopulation":"Patients with unexplained or treatment-refractory infections and their clinical specimens","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC) Genomic Medicine Center of Excellence"],"partnerOrganizations":["Oxford Nanopore Technologies"],"startYear":2024,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Diagnostic protocol announced in August 2024; the center was accredited as a national reference center/provider for metagenomics services in November 2025.","statusEvidenceDate":"2025-11-01","description":"Applies untargeted second- and third-generation sequencing for rapid detection of bacteria, viruses, fungi, parasites and resistance signatures in difficult infections.","scaleSummary":"More than 100 patients reported in the initial program; around half of detected cases involved antimicrobial resistance; results targeted within 24 hours.","dataTypes":["clinical metagenomic sequencing","long-read sequencing","pathogen identification","AMR profiling"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical/controlled; national service support rather than a public dataset","primarySourceUrl":"https://www.kfshrc.edu.sa/en/news/2024/08/kfshrc-develops-genetic-diagnosis-protocol-to-achieve-zero-undiagnosed-infectious-diseases","inclusionBasis":"Operational clinical pathogen-sequencing program with patient-scale results and subsequent national-reference accreditation.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"The 2024 protocol and 2025 accreditation are phases of one continuing program/infrastructure record, not separate projects.","sources":[{"id":"public:sa-kfshrc-metagenomics-reference:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/news/2024/08/kfshrc-develops-genetic-diagnosis-protocol-to-achieve-zero-undiagnosed-infectious-diseases","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kfshrc-metagenomics-reference:s02","type":"additional record source","rank":2,"url":"https://www.kfshrc.edu.sa/en/news/2025/11/kfshrc-accredited-as-national-reference-centre-for-metagenomics-research-services","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-kfshrc-pgt","name":"KFSHRC Preimplantation Genetic Testing Program","displayTitle":"KFSHRC Preimplantation Genetic Testing Program","aliases":["PGT Program"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi couples and families referred nationally to KFSHRC","projectType":"Clinical reproductive-genomics program","domainGroup":"Human health and population genomics","researchDomain":"Inherited-disease prevention","organismPopulation":"Saudi couples at risk of transmitting inherited disorders and their embryos","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":[],"startYear":2001,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"KFSHRC states that the program launched in 2001, has served thousands of families and remained active in October 2025.","statusEvidenceDate":"2025-10-01","description":"Uses embryo genetic testing and NGS to help at-risk families avoid transmission of severe inherited disorders.","scaleSummary":"Thousands of Saudi families served; described by KFSHRC as the largest annual-volume program of its kind in the Middle East.","dataTypes":["preimplantation genetic testing","targeted next-generation sequencing","embryo genotyping"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical service; individual data controlled","primarySourceUrl":"https://www.kfshrc.edu.sa/en/news/2025/10/preimplantation-genetic-testing-program-offers-saudi-families-a-healthier-and-safer-future","inclusionBasis":"Long-running national-referral genomic prevention program with thousands of families and continuing NGS expansion.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Clinical prevention service, not a population cohort. Distinct from fetal/prenatal testing, newborn screening and premarital screening.","sources":[{"id":"public:sa-kfshrc-pgt:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/news/2025/10/preimplantation-genetic-testing-program-offers-saudi-families-a-healthier-and-safer-future","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-kfshrc-precision-medicine-clinic","name":"KFSHRC Precision Medicine Clinic","displayTitle":"KFSHRC Precision Medicine Clinic","aliases":["PMC","Precision Medicine Services in Family Medicine Clinics"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"KFSHRC Family Medicine and Primary Care, Riyadh; national-referral population","projectType":"Primary-care genomic medicine implementation cohort","domainGroup":"Human health and population genomics","researchDomain":"Predictive genomics, pharmacogenomics and preventive precision medicine","organismPopulation":"Adults receiving primary-care genomic risk and pharmacogenomic assessment","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":["Alfaisal University","University of Pittsburgh Medical Center"],"startYear":2025,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Clinic launched in January 2025; a 2026 implementation report analyzed its 2025 patient activity.","statusEvidenceDate":"2026-07-06","description":"Embeds predictive genomic testing and pharmacogenomic decision support into primary care for hereditary cancer, cardiovascular risk, actionable genes and reproductive health.","scaleSummary":"212 patients in 2025: 121 predictive-genomics consultations and 91 pharmacogenomics consultations.","dataTypes":["predictive genomic testing","pharmacogenomics","family history","EHR decision support","clinical outcomes"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical/controlled; aggregate implementation outcomes published","primarySourceUrl":"https://www.kfshrc.edu.sa/en/news/2025/01/kfshrc-launches-precision-medicine-services-in-family-medicine-clinics","inclusionBasis":"Named operational precision-medicine clinic with a defined implementation cohort and peer-reviewed outcomes.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Clinical implementation child of the KFSHRC Genomic Medicine Center umbrella; do not add test counts across these records as independent people.","sources":[{"id":"public:sa-kfshrc-precision-medicine-clinic:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/news/2025/01/kfshrc-launches-precision-medicine-services-in-family-medicine-clinics","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kfshrc-precision-medicine-clinic:s02","type":"additional record source","rank":2,"url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13343084/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-kfshrc-rady-newborn-genomics","name":"KFSHRC-Rady Genome-Based Newborn Screening Platform","displayTitle":"KFSHRC-Rady Genome-Based Newborn Screening Platform","aliases":["KFSHRC-Rady Newborn Genomic Screening Agreement","BeginNGS Saudi Implementation"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi newborns; initial deployment cohort not disclosed","projectType":"Genome-based newborn screening implementation partnership","domainGroup":"Human health and population genomics","researchDomain":"Treatable genetic disease and implementation research","organismPopulation":"Saudi newborns","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)","Rady Children's Institute for Genomic Medicine"],"partnerOrganizations":["BeginNGS Consortium"],"startYear":2025,"endYear":null,"lifecycleStatus":"implementation","lifecycleGroup":"Active / operational","statusBasis":"Agreement and KFSHRC entry into the BeginNGS Consortium were announced on 2025-10-07; no published Saudi cohort size or outcomes are yet available.","statusEvidenceDate":"2025-10-07","description":"Aims to implement genome-based newborn screening for approximately 500 treatable/preventable conditions while studying clinical utility, cost-effectiveness, protocols and workforce needs.","scaleSummary":"Condition scope approximately 500; participant scale not disclosed.","dataTypes":["newborn whole-genome sequencing","clinical utility","health economics","implementation metrics"],"accessionIds":[],"identifiers":[],"dataAccess":"No released cohort data; clinical/controlled implementation","primarySourceUrl":"https://www.kfshrc.edu.sa/ar/news/2025/10/kfshrc-inks-agreement-with-rady-institute-for-genetic-screening-of-newborns","inclusionBasis":"Official national-referral implementation partnership in an international genome-based newborn-screening consortium.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Potential future overlap with Baby Genome is unknown; there is no evidence that they are the same initiative. No enrollment should be inferred from condition count.","sources":[{"id":"public:sa-kfshrc-rady-newborn-genomics:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/ar/news/2025/10/kfshrc-inks-agreement-with-rady-institute-for-genetic-screening-of-newborns","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kfshrc-rady-newborn-genomics:s02","type":"additional record source","rank":2,"url":"https://www.spa.gov.sa/N2415945","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-kfshrc-rady-newborn-genomics:s03","type":"additional record source","rank":3,"url":"https://radygenomics.org/2025/king-faisal-specialist-hospital-research-centre-joins-beginngs-consortium-to-advance-newborn-screening-by-genome-sequencing-in-the-region/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"sa-ksa001","name":"KSA001 Saudi Reference Genome","displayTitle":"KSA001 Saudi Reference Genome","aliases":["KSA001"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"One Saudi trio recruited at King Fahad Medical City","projectType":"Population reference genome dataset","domainGroup":"Human health and population genomics","researchDomain":"Reference genomics and population variation","organismPopulation":"One Saudi adult and both parents","leadOrganizations":["King Abdullah University of Science and Technology (KAUST)","King Fahad Medical City"],"partnerOrganizations":[],"startYear":2022,"endYear":2024,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"Recruitment occurred in 2022-2023; the phased reference-quality assembly and public data were published in 2024.","statusEvidenceDate":"2024-11-28","description":"Produced the first publicly available reference-quality phased diploid/near-telomere-to-telomere genome for a Saudi individual.","scaleSummary":"One index genome plus parental data; public raw reads, assemblies and code. Use of KSA001 as reference reduces called variants by more than one million per genome relative to GRCh38 in reported analyses.","dataTypes":["PacBio HiFi","Oxford Nanopore","Hi-C","Illumina sequencing","phased de novo assembly"],"accessionIds":["PRJNA891101"],"identifiers":[{"scheme":"BioProject","value":"PRJNA891101"}],"dataAccess":"Public","primarySourceUrl":"https://repository.kaust.edu.sa/items/73d1842b-ba03-4722-a558-3222dcf462ca","inclusionBasis":"Named public reference dataset and direct precursor to a national pangenome, despite its single-index scale.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":["sa-public-pangenome"],"notes":"KSA001 is incorporated into the Saudi pangenome/JaSaPaGe resource; do not count its index individual again as a newly recruited pangenome participant.","sources":[{"id":"public:sa-ksa001:s01","type":"primary record source","rank":1,"url":"https://repository.kaust.edu.sa/items/73d1842b-ba03-4722-a558-3222dcf462ca","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-ksa001:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41597-024-04121-2","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-ksa001:s03","type":"additional record source","rank":3,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA891101","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"sa-lifera-omics","name":"Lifera Omics-CENTOGENE Saudi Biodatabank and Genomics Platform","displayTitle":"Lifera Omics-CENTOGENE Saudi Biodatabank and Genomics Platform","aliases":["Lifera Omics","Lifera-CENTOGENE Joint Venture"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi and GCC clinical genomics with global CENTOGENE comparison data","projectType":"Commercial national-scale genomics and multi-omics infrastructure","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Rare disease, population health, clinical diagnostics and bioinformatics","organismPopulation":"Saudi patients and global comparator cases in the CENTOGENE biodatabank","leadOrganizations":["Lifera / Public Investment Fund","CENTOGENE"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Joint venture completed on 2023-11-28; Lifera Omics has operated in Riyadh since January 2024 and maintains active service and infrastructure pages.","statusEvidenceDate":"2026-08-15","description":"Provides genomic and multi-omic testing, bioinformatics and biodatabank access for Saudi precision-health, rare-disease and screening programs.","scaleSummary":"Company-reported access to more than 60,000 Saudi patient datasets, over 70 million variants and a global base exceeding 800,000 patients.","dataTypes":["clinical genomic testing","multi-omics","variants","phenotypes","bioinformatics"],"accessionIds":[],"identifiers":[],"dataAccess":"Commercial/controlled; aggregate scale public","primarySourceUrl":"https://lifera.com.sa/omics/","inclusionBasis":"National-scale, PIF-backed genomics infrastructure with a large reported Saudi data footprint and continuing operations.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Commercial/infrastructure initiative rather than one recruitment cohort. Saudi dataset provenance and overlap with referral cohorts, including the Saudi Adult Genomics Group, are not disclosed.","sources":[{"id":"public:sa-lifera-omics:s01","type":"primary record source","rank":1,"url":"https://lifera.com.sa/omics/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-lifera-omics:s02","type":"additional record source","rank":2,"url":"https://www.centogene.com/centogene-and-lifera-a-public-investment-fund-pif-company-complete-strategic-joint-venture-transaction/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-mers-genomic-surveillance-series","name":"Saudi MERS-CoV Genomic Investigation and Surveillance Series","displayTitle":"Saudi MERS-CoV Genomic Investigation and Surveillance Series","aliases":["KSA MERS-CoV Investigation Team Genomics"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi human outbreaks and dromedary-camel surveillance sites","projectType":"Episodic national pathogen-genomic investigation series","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"MERS-CoV transmission, evolution and zoonotic surveillance","organismPopulation":"MERS-CoV from human cases and dromedary camels in Saudi Arabia","leadOrganizations":["Saudi Ministry of Health","Saudi Public Health Authority / former Saudi CDC","KSA MERS-CoV Investigation Team"],"partnerOrganizations":["World Health Organization","Saudi and international research laboratories"],"startYear":2013,"endYear":null,"lifecycleStatus":"episodic","lifecycleGroup":"Other / unstated","statusBasis":"National teams produced early human genomes in 2013, used full-genome sequencing in later outbreak investigations, and generated camel MERS genomes from 2023-2024 surveillance published in 2025.","statusEvidenceDate":"2025-01-01","description":"A sequence of linked national outbreak and zoonotic investigations using MERS-CoV genomes to reconstruct transmission and monitor viral diversity.","scaleSummary":"Early 2013 work reported 32 complete/partial genomes (20 at least 99% complete); a 2023-2024 camel study sequenced 42 MERS-CoV genomes from 558 swabs plus seven 229E-related camel coronavirus genomes.","dataTypes":["coronavirus whole-genome sequencing","phylogenetics","human outbreak metadata","camel surveillance"],"accessionIds":[],"identifiers":[],"dataAccess":"Paper-specific public sequence accessions and WHO outbreak summaries","primarySourceUrl":"https://www.who.int/emergencies/disease-outbreak-news/item/2019-DON145","inclusionBasis":"Sustained national pathogen-genomics capability evidenced across multiple outbreaks and zoonotic surveillance periods, despite lacking one enduring brand.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Not a single stable branded project; retained as an episodic historical-to-current series. Do not add overlapping 2013 genome counts from different papers.","sources":[{"id":"public:sa-mers-genomic-surveillance-series:s01","type":"primary record source","rank":1,"url":"https://www.who.int/emergencies/disease-outbreak-news/item/2019-DON145","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-mers-genomic-surveillance-series:s02","type":"additional record source","rank":2,"url":"https://journals.asm.org/doi/10.1128/mbio.01062-13","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-mers-genomic-surveillance-series:s03","type":"additional record source","rank":3,"url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3898949/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-mers-genomic-surveillance-series:s04","type":"additional record source","rank":4,"url":"https://wwwnc.cdc.gov/eid/article/31/1/24-1030_article","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":4},{"id":"sa-mi-gwas","name":"Genome-Wide Association Studies of Myocardial Infarction in Saudi Arabian Cohorts","displayTitle":"Genome-Wide Association Studies of Myocardial Infarction in Saudi Arabian Cohorts","aliases":["Saudi MI GWAS","PRJEB59353"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"All five Saudi regions, including Al-Khobar and Al-Hofuf recruitment sites","projectType":"Two-cohort genome-wide association study","domainGroup":"Human health and population genomics","researchDomain":"Cardiovascular genomics","organismPopulation":"Saudi myocardial-infarction cases and controls","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":["King Fahd Hospital of the University","King Abdulaziz City for Science and Technology (KACST)"],"startYear":2019,"endYear":2023,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"Recruitment included 2019-2020 and legacy cohorts; primary combined GWAS and public EVA project were published in December 2023.","statusEvidenceDate":"2023-12-10","description":"Combined two Saudi case-control studies to identify and replicate myocardial-infarction risk loci and characterize Saudi genetic structure.","scaleSummary":"3,950 myocardial-infarction cases and 2,324 controls (6,274 total).","dataTypes":["genotyping array","GWAS summary statistics","clinical phenotype"],"accessionIds":["PRJEB59353","11-BIO1342-46"],"identifiers":[{"scheme":"BioProject","value":"PRJEB59353"},{"scheme":"Other","value":"11-BIO1342-46"}],"dataAccess":"Study metadata/public accession; individual-level access subject to repository controls","primarySourceUrl":"https://www.ebi.ac.uk/eva/?eva-study=PRJEB59353","inclusionBasis":"Named, multi-center, national-scale Saudi GWAS with a public repository accession.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"May partially overlap the KFSHRC cardiometabolic/PRS cohort; exact sample overlap is not reported.","sources":[{"id":"public:sa-mi-gwas:s01","type":"primary record source","rank":1,"url":"https://www.ebi.ac.uk/eva/?eva-study=PRJEB59353","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-mi-gwas:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41598-023-49105-1","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-moh-genomics-platform","name":"Saudi Genomics Platform","displayTitle":"Saudi Genomics Platform","aliases":["SGP v1","Saudi Genomics Data Bank"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Nationwide Saudi and Indigenous Arab clinical-laboratory contributors","projectType":"National genomic data platform and variant database","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Population variation, rare disease and genomic data infrastructure","organismPopulation":"Healthy Saudi/Indigenous Arab participants and patients with childhood-onset genetic disorders","leadOrganizations":["Saudi Ministry of Health Data Bank"],"partnerOrganizations":["Participating public and private molecular diagnostic laboratories"],"startYear":2025,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The public v1 browser and FAQ were live in 2025-2026 and state that expansion and additional data types are planned.","statusEvidenceDate":"2026-08-15","description":"Aggregates and harmonizes Saudi genomic variants and HPO phenotypes for clinical interpretation, research and national genomic-data reuse.","scaleSummary":"v1 contains 1,378 exomes and more than 10 million high-confidence GRCh38 variants.","dataTypes":["whole-exome sequencing","variant frequencies","HPO phenotypes"],"accessionIds":[],"identifiers":[],"dataAccess":"Public aggregate browser plus controlled-access data","primarySourceUrl":"https://saudigenomics.org/","inclusionBasis":"Operational national genomic-data platform with explicit public release scale and ongoing expansion.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Separate Ministry of Health platform from KACST's Saudi Human Genome Program despite the SGP acronym collision. The homepage discusses WES/WGS broadly, but the FAQ says v1 contains exomes only. Source-cohort provenance and overlap with SHGP are not publicly resolved.","sources":[{"id":"public:sa-moh-genomics-platform:s01","type":"primary record source","rank":1,"url":"https://saudigenomics.org/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-moh-genomics-platform:s02","type":"additional record source","rank":2,"url":"https://saudigenomics.org/faq/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-mrsa-national-wgs","name":"Sequencing and Computational Analysis of MRSA Samples","displayTitle":"Sequencing and Computational Analysis of MRSA Samples","aliases":["KAUST-KACST Nationwide MRSA Genomics Project","Nationwide Saudi Staphylococcus aureus Genotype-Phenotype Survey"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Seven Saudi regions and more than 30 hospitals/reference laboratories; clinical, community and wastewater sources","projectType":"Nationwide pathogen-genomics and AMR cohort","domainGroup":"Pathogen genomics and infectious disease","researchDomain":"Staphylococcus aureus genomic epidemiology and antimicrobial resistance","organismPopulation":"Methicillin-resistant and susceptible Staphylococcus aureus isolates from clinical, healthy-community and wastewater sources","leadOrganizations":["King Abdullah University of Science and Technology (KAUST)","King Abdulaziz City for Science and Technology (KACST)"],"partnerOrganizations":["King Abdullah International Medical Research Center","Saudi Public Health Authority","Saudi hospitals and reference laboratories"],"startYear":2018,"endYear":2021,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"Named funded project ran in 2018-2021; nationwide integrated analysis and public data were published in November 2025.","statusEvidenceDate":"2025-11-12","description":"Combined whole-genome sequencing with susceptibility testing to map Saudi S. aureus lineages, resistance determinants and source distributions.","scaleSummary":"686 isolates from seven regions, 30-plus hospitals/reference laboratories and five wastewater sources; susceptibility to 16 antibiotics; public ENA and Zenodo outputs.","dataTypes":["bacterial whole-genome sequencing","antimicrobial susceptibility phenotypes","epidemiologic metadata"],"accessionIds":["PRJEB59751","TSC&KACST-KAUST-2018-05-27-01"],"identifiers":[{"scheme":"BioProject","value":"PRJEB59751"},{"scheme":"Other","value":"TSC&KACST-KAUST-2018-05-27-01"}],"dataAccess":"Public sequence data and FAIR metadata","primarySourceUrl":"https://borg.kaust.edu.sa/projects/by-year/2018/sequencing-and-computational-analysis-mrsa-samples","inclusionBasis":"Named, nationwide, multi-source pathogen WGS project with public sequence accession and genotype-phenotype outputs.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Project end predates publication. This is pathogen rather than human genomics but squarely within national AMR surveillance research.","sources":[{"id":"public:sa-mrsa-national-wgs:s01","type":"primary record source","rank":1,"url":"https://borg.kaust.edu.sa/projects/by-year/2018/sequencing-and-computational-analysis-mrsa-samples","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-mrsa-national-wgs:s02","type":"additional record source","rank":2,"url":"https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001540","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-mrsa-national-wgs:s03","type":"additional record source","rank":3,"url":"https://www.ebi.ac.uk/ena/browser/view/PRJEB59751","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"sa-national-newborn-screening","name":"National Newborn Screening Program","displayTitle":"National Newborn Screening Program","aliases":["National Early Screening Program for Newborns to Limit Disability"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Newborns across Saudi Arabia","projectType":"National public-health genetic and metabolic screening program","domainGroup":"Human health and population genomics","researchDomain":"Inherited endocrine and metabolic disease","organismPopulation":"Saudi newborns","leadOrganizations":["Saudi Ministry of Health"],"partnerOrganizations":["Participating Saudi hospitals"],"startYear":2005,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"First phase launched in August 2005; by 2018 the program reached 188 hospitals and 97% of births in Ministry of Health hospitals, with continued expansion announced.","statusEvidenceDate":"2018-11-22","description":"Screens newborns for 16 inherited endocrine and metabolic disorders to enable presymptomatic intervention and reduce disability.","scaleSummary":"A 2005-2012 national analysis covered 775,000 newborns from 139 hospitals and identified 743 affected infants; 195,836 samples were screened in 2018 alone.","dataTypes":["biochemical assays","immunoassays","confirmatory genetic testing","newborn clinical data"],"accessionIds":[],"identifiers":[],"dataAccess":"National clinical/public-health program; individual data not public","primarySourceUrl":"https://www.moh.gov.sa/en/ministry/mediacenter/news/pages/news-2018-11-22-002.aspx","inclusionBasis":"Long-running nationwide inherited-disease screening program with hundreds of thousands of newborns and published outcomes.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Primarily biochemical/immunoassay screening rather than whole-genome sequencing. Distinct from the 2025 Baby Genome WGS program and KFSHRC-Rady genome-based newborn screening.","sources":[{"id":"public:sa-national-newborn-screening:s01","type":"primary record source","rank":1,"url":"https://www.moh.gov.sa/en/ministry/mediacenter/news/pages/news-2018-11-22-002.aspx","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-national-newborn-screening:s02","type":"additional record source","rank":2,"url":"https://onlinelibrary.wiley.com/doi/10.1111/jpc.13469","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-national-newborn-screening:s03","type":"additional record source","rank":3,"url":"https://www.moh.gov.sa/en/Ministry/MediaCenter/News/Pages/NEWS-2010-9-29-001.aspx","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"sa-nourah-tissue-biobank","name":"Nourah's Tissue Biobank","displayTitle":"Nourah's Tissue Biobank","aliases":["Princess Nourah University Biobank"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Princess Nourah University and King Abdullah bin Abdulaziz University Hospital patients","projectType":"Institutional tissue biobank","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Genomics, rare disease and precision medicine","organismPopulation":"Patients and research participants associated with PNU and KAAUH","leadOrganizations":["Princess Nourah bint Abdulrahman University","King Abdullah bin Abdulaziz University Hospital"],"partnerOrganizations":[],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"An official PNU page describes the operating biobank and its research remit; launch date and current holdings are not disclosed there.","statusEvidenceDate":"2026-08-15","description":"Collects and stores tissue and linked anonymized medical information for genomics, rare-disease and precision-medicine research.","scaleSummary":"Current holdings are not stated on the primary institutional page.","dataTypes":["tissue biospecimens","anonymized clinical data","genomics-ready samples"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled institutional biobank access","primarySourceUrl":"https://pnu.edu.sa/en/Centers/BusinessSupportAndDevelopment/Pages/Biobank.aspx","inclusionBasis":"Named operating institutional biobank with an explicit genomics and rare-disease remit.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Institutional rather than national. Secondary claims about sample counts were not used because a primary current holdings statement was not located.","sources":[{"id":"public:sa-nourah-tissue-biobank:s01","type":"primary record source","rank":1,"url":"https://pnu.edu.sa/en/Centers/BusinessSupportAndDevelopment/Pages/Biobank.aspx","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-nourah-tissue-biobank:s02","type":"additional record source","rank":2,"url":"https://biobank.kaauh.edu.sa/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-pavs","name":"Phenotype-Associated Variants in Saudi Arabia","displayTitle":"Phenotype-Associated Variants in Saudi Arabia","aliases":["PAVS"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Aggregated Saudi clinical cohorts with international comparison datasets","projectType":"Rare-disease genotype-phenotype knowledgebase","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Mendelian disease and semantic genomics","organismPopulation":"Saudi rare-disease cases plus mixed and Deciphering Developmental Disorders comparison cohorts","leadOrganizations":["King Abdullah University of Science and Technology Bio-Ontology Research Group"],"partnerOrganizations":["Saudi rare-disease data contributors"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Public browser, SPARQL endpoint, API and downloads were operational; the resource was described in an April 2026 medRxiv preprint.","statusEvidenceDate":"2026-08-15","description":"Harmonizes Saudi genotype-phenotype evidence with GA4GH Phenopackets and RDF to support rare-disease discovery and semantic queries.","scaleSummary":"5,132 Saudi clinical cases from four cohorts, 522 cases from a mixed cohort and 1,856 DDD cases; 2,389 genes and 3,528 diseases.","dataTypes":["variants","HPO phenotypes","GA4GH Phenopackets","RDF knowledge graph"],"accessionIds":[],"identifiers":[],"dataAccess":"Public browser, API, SPARQL endpoint and downloads; source-level restrictions may remain","primarySourceUrl":"https://pavs.phenomebrowser.net/","inclusionBasis":"Named, public, multi-cohort Saudi rare-disease knowledgebase with thousands of cases.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Aggregated resource, not a newly recruited cohort. Saudi cases overlap historical SHGP/rare-disease cohorts. Publication remained a preprint at verification.","sources":[{"id":"public:sa-pavs:s01","type":"primary record source","rank":1,"url":"https://pavs.phenomebrowser.net/","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-pavs:s02","type":"additional record source","rank":2,"url":"https://www.medrxiv.org/content/10.64898/2026.04.05.26350189v1.full-text","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-pha-national-biobank","name":"National Biobank at the Saudi Public Health Authority","displayTitle":"National Biobank at the Saudi Public Health Authority","aliases":["PHA National Biobank","Weqaya National Biobank"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi national public-health population, including newborn specimens","projectType":"Public-health biobank and health-security infrastructure","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Communicable and noncommunicable disease, AMR, rare disease and emergency response","organismPopulation":"Saudi residents and public-health specimens, including newborn residual samples","leadOrganizations":["Saudi Public Health Authority (Weqaya)"],"partnerOrganizations":["Saudi Ministry of Health"],"startYear":2022,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The Minister of Health inaugurated the biobank in December 2022; an operational newborn-specimen opt-out mechanism remains live.","statusEvidenceDate":"2026-08-15","description":"National repository intended to support disease control, early detection, AMR studies, vaccines and medicines, rare/common disease research and emergency response.","scaleSummary":"Public holdings count is not disclosed.","dataTypes":["biospecimens","newborn residual samples","public-health metadata"],"accessionIds":[],"identifiers":[],"dataAccess":"Not publicly stated; public-health governance/controlled","primarySourceUrl":"https://www.pha.gov.sa/en-us/Media/News/Pages/The-Minister-of-Health-inaugurates-the-National-Biobank-at-the-Public-Health-Authority.aspx","inclusionBasis":"Officially inaugurated national public-health biobank with continuing operational evidence.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from KAIMRC's Saudi Biobank. The newborn opt-out form evidences specimen storage but does not establish whole-genome sequencing.","sources":[{"id":"public:sa-pha-national-biobank:s01","type":"primary record source","rank":1,"url":"https://www.pha.gov.sa/en-us/Media/News/Pages/The-Minister-of-Health-inaugurates-the-National-Biobank-at-the-Public-Health-Authority.aspx","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-pha-national-biobank:s02","type":"additional record source","rank":2,"url":"https://www.pha.gov.sa/ar-sa/Pages/Biobank_opt-out.aspx","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-ptc-sa","name":"Saudi Thyroid Cancer Genome Project","displayTitle":"Saudi Thyroid Cancer Genome Project","aliases":["PTC-SA","Molecular Signatures of Saudi Thyroid Cancer","Saudi Arabia Papillary Thyroid Cancer Project"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"National Saudi cohort coordinated at KFSHRC","projectType":"International cancer-genome cohort","domainGroup":"Human health and population genomics","researchDomain":"Papillary thyroid cancer genomics","organismPopulation":"Saudi patients with papillary thyroid carcinoma; paired tumor and normal samples","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)","International Cancer Genome Consortium / ICGC ARGO"],"partnerOrganizations":["Saudi Government"],"startYear":2012,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Launched on 2012-03-08; ICGC ARGO reported 239 donors and completion of all clinical-data requirements on 2023-08-07, and the program remains listed by ARGO.","statusEvidenceDate":"2023-08-07","description":"Characterizes the genomic, transcriptomic and selected epigenomic landscape of Saudi papillary thyroid cancer and links molecular profiles to longitudinal clinical data.","scaleSummary":"Goal of 500 cases; 239 donors with whole-exome and transcriptomic data plus 11 clinical modules and 70 clinical fields reported in 2023.","dataTypes":["paired tumor-normal whole-exome sequencing","RNA sequencing","epigenomics","longitudinal clinical data"],"accessionIds":["PTC-SA"],"identifiers":[{"scheme":"Other","value":"PTC-SA"}],"dataAccess":"ICGC ARGO controlled-access cancer data; aggregate program information public","primarySourceUrl":"https://www.icgc-argo.org/page/98/ptc-sa","inclusionBasis":"Named Saudi contribution to ICGC/ICGC ARGO with donor-level multi-omics and clinical-data milestones.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"PTC-SA, Saudi Thyroid Cancer Genome Project and Molecular Signatures of Saudi Thyroid Cancer are treated as one project. It may overlap with larger KFSHRC thyroid clinicopathology/targeted-mutation cohorts; do not sum their sample counts.","sources":[{"id":"public:sa-ptc-sa:s01","type":"primary record source","rank":1,"url":"https://www.icgc-argo.org/page/98/ptc-sa","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-ptc-sa:s02","type":"additional record source","rank":2,"url":"https://journals.sagepub.com/doi/10.1089/thy.2019.0052","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-ptc-sa:s03","type":"additional record source","rank":3,"url":"https://dcc.icgc.org/projects/PTC-SA","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-ptc-sa:s04","type":"additional record source","rank":4,"url":"https://www.newswire.ca/news-releases/icgc-launches-new-thyroid-cancer-project-from-saudi-arabia-509765141.html","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-ptc-sa:s05","type":"additional record source","rank":5,"url":"https://www.icgc-argo.org/news/38/first-icgc-argo-programme-to-complete-clinical-data","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-ptc-sa:s06","type":"additional record source","rank":6,"url":"https://www.kfshrc.edu.sa/en/research/projects/kh-molecular-signatures-of-saudi-thyroid-cancer","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":6},{"id":"sa-public-pangenome","name":"A Public Saudi Pangenome as Reference for Genomics in the Middle East","displayTitle":"A Public Saudi Pangenome as Reference for Genomics in the Middle East","aliases":["Saudi Pangenome Project","JaSaPaGe Saudi Component"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Genetically and geographically diverse Saudi regions and tribes","projectType":"Population pangenome and reference-genomics project","domainGroup":"Human health and population genomics","researchDomain":"Population genomics, structural variation and reference bias","organismPopulation":"Saudi individuals selected for geographic and tribal diversity","leadOrganizations":["King Abdullah University of Science and Technology (KAUST)"],"partnerOrganizations":["KAUST Smart Health Initiative","KAUST Bioscience Core Laboratory","Saudi clinical partners","Japanese JaSaPaGe collaborators"],"startYear":2024,"endYear":2026,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The formal KAUST project runs from 2024 through 2026; a major JaSaPaGe pangenome output was published in 2025.","statusEvidenceDate":"2026-08-15","description":"Uses long- and short-read sequencing to build phased Saudi assemblies and graph references that reduce reference bias and improve variant interpretation in Middle Eastern genomes.","scaleSummary":"Formal goal of at least 10 diploid assemblies. JaSaPaGe released nine Saudi genomes (eight newly sequenced plus KSA001) alongside ten Japanese genomes.","dataTypes":["PacBio HiFi","Oxford Nanopore","Hi-C","Illumina sequencing","phased assemblies","pangenome graphs"],"accessionIds":["PRJNA1091214","PRJNA891101"],"identifiers":[{"scheme":"BioProject","value":"PRJNA1091214"},{"scheme":"BioProject","value":"PRJNA891101"}],"dataAccess":"Public raw reads, assemblies, graphs and workflows","primarySourceUrl":"https://borg.kaust.edu.sa/projects/by-year/2024/public-saudi-pangenome-reference-genomics-middle-east","inclusionBasis":"Funded national-reference project with public multi-platform sequence data and a peer-reviewed pangenome release.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":["sa-ksa001"],"notes":"JaSaPaGe is a project output/phase, not another Saudi initiative. KSA001 is a precursor/included sample. The formal target and current released count use different denominators.","sources":[{"id":"public:sa-public-pangenome:s01","type":"primary record source","rank":1,"url":"https://borg.kaust.edu.sa/projects/by-year/2024/public-saudi-pangenome-reference-genomics-middle-east","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-public-pangenome:s02","type":"additional record source","rank":2,"url":"https://www.nature.com/articles/s41597-025-05652-y","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-public-pangenome:s03","type":"additional record source","rank":3,"url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1091214","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-public-pangenome:s04","type":"additional record source","rank":4,"url":"https://www.natureasia.com/ar/nmiddleeast/article/10.1038/nmiddleeast.2025.34","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":4},{"id":"sa-riyadh-cohort","name":"Riyadh Cohort","displayTitle":"Riyadh Cohort","aliases":["RIYADH Cohort","Biomarkers Screening Project","Center for Biomarkers of Chronic Diseases Biobank","CBCD Biobank"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Riyadh region primary-health-care centers and schools","projectType":"Population cardiometabolic cohort and biobank","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Diabetes, obesity, cardiovascular risk and genomics-enabled biomarker research","organismPopulation":"Consenting Saudi adults and children screened through Riyadh primary care and schools","leadOrganizations":["King Saud University Center for Biomarkers of Chronic Diseases"],"partnerOrganizations":["Saudi Ministry of Health"],"startYear":2008,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Recruitment cohorts span 2008-2019 and 2021-2023, and the stored biobank was used in peer-reviewed work published in 2024-2025.","statusEvidenceDate":"2025-01-01","description":"Long-running cardiometabolic screening cohort with stored biospecimens and targeted genetic, epigenetic and biomarker substudies.","scaleSummary":"10,220 people in two curated analytic cohorts; an earlier program description reported more than 17,000 screened/consented participants.","dataTypes":["serum and plasma biobank","anthropometrics","clinical chemistry","targeted genotyping","epigenetic assays"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled institutional biobank; public access terms not stated","primarySourceUrl":"https://www.frontiersin.org/journals/public-health/articles/10.3389/fpubh.2024.1371359/full","inclusionBasis":"Named continuing biobank/cohort with more than 10,000 participants and repeated genomics-enabled substudies.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Primarily a phenotyped biobank rather than a population-WGS program. The greater-than-17,000 historical screening figure and 10,220 curated cohort figure have different denominators and should not be added.","sources":[{"id":"public:sa-riyadh-cohort:s01","type":"primary record source","rank":1,"url":"https://www.frontiersin.org/journals/public-health/articles/10.3389/fpubh.2024.1371359/full","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-riyadh-cohort:s02","type":"additional record source","rank":2,"url":"https://onlinelibrary.wiley.com/doi/abs/10.1111/cob.70032","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-riyadh-cohort:s03","type":"additional record source","rank":3,"url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC4788945/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3},{"id":"sa-saci","name":"Saudi/Arab Cancerome Initiative","displayTitle":"Saudi/Arab Cancerome Initiative","aliases":["SACI"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi Arabia; KFSHRC-led with international collaborators","projectType":"Cancer multi-omics initiative","domainGroup":"Human health and population genomics","researchDomain":"Pan-cancer genomics and precision oncology","organismPopulation":"Saudi patients with breast, liver, colorectal, lung and other cancers","leadOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":["Harvard T.H. Chan School of Public Health"],"startYear":null,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Listed as a current KFSHRC research initiative; the page describes ongoing integration and validation aims but gives no enrollment or funding dates.","statusEvidenceDate":"2026-08-15","description":"Uses genomics, transcriptomics, proteomics, AI and network medicine to discover tumor and blood biomarkers, with organoid and xenograft validation.","scaleSummary":"Multiple common Saudi cancer types; no public participant target or released dataset stated.","dataTypes":["genomics","transcriptomics","proteomics","organoids","AI models"],"accessionIds":[],"identifiers":[],"dataAccess":"Not stated","primarySourceUrl":"https://www.kfshrc.edu.sa/en/research/projects/di-saudi-arab-cancerome-initiative-saci","inclusionBasis":"Named institutional pan-cancer initiative with an official project page and defined multi-cancer scope.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"May umbrella some KFSHRC cancer projects in this inventory. Public evidence does not establish it as a rename of the 2013-2016 Diseasome Project.","sources":[{"id":"public:sa-saci:s01","type":"primary record source","rank":1,"url":"https://www.kfshrc.edu.sa/en/research/projects/di-saudi-arab-cancerome-initiative-saci","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-sbipsc","name":"Saudi Bank of Induced Pluripotent Stem Cells","displayTitle":"Saudi Bank of Induced Pluripotent Stem Cells","aliases":["SBiPSCs","Saudi iPSC Bank"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi rare/common disease patients and HLA-selected healthy donors","projectType":"National cell bank and functional-genomics resource","domainGroup":"Human health and population genomics","researchDomain":"Regenerative medicine, disease modeling and population immunogenetics","organismPopulation":"Saudi patients with genetic disorders and healthy HLA-selected donors","leadOrganizations":["King Abdullah International Medical Research Center (KAIMRC)"],"partnerOrganizations":["Ministry of National Guard Health Affairs","Saudi Stem Cell Donor Registry"],"startYear":2021,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Official initiative launched in 2021 and an HLA-haplobank proof-of-principle was published in 2023.","statusEvidenceDate":"2023-12-20","description":"Creates disease-specific Saudi iPSC lines and a population-matched HLA-homozygous cell bank for functional genomics and regenerative therapies.","scaleSummary":"Modeling indicates 13 selected HLA-homozygous lines could match about 30% of Saudis and 39 lines about 50%; current deposited-line count is not stated.","dataTypes":["induced pluripotent stem-cell lines","HLA genotypes","functional genomics"],"accessionIds":[],"identifiers":[],"dataAccess":"Application/controlled cell-bank access; terms on official site","primarySourceUrl":"https://getkaimrcipsbank.org/","inclusionBasis":"Named national cell-bank resource with explicit genomics basis and peer-reviewed population-coverage analysis.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Distinct from, but derived from and linked to, Saudi Stem Cell Donor Registry HLA data.","sources":[{"id":"public:sa-sbipsc:s01","type":"primary record source","rank":1,"url":"https://getkaimrcipsbank.org/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-sbipsc:s02","type":"additional record source","rank":2,"url":"https://link.springer.com/article/10.1186/s13287-023-03612-0","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-sfda-pgx-pharmacovigilance","name":"SFDA Pharmacogenomics-Pharmacovigilance Project","displayTitle":"SFDA Pharmacogenomics-Pharmacovigilance Project","aliases":[],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"National medicines regulation and adverse-event reporting","projectType":"Regulatory pharmacogenomics initiative","domainGroup":"Human health and population genomics","researchDomain":"Drug safety and pharmacogenomics","organismPopulation":"Medicines and adverse-event reports in Saudi Arabia","leadOrganizations":["Saudi Food and Drug Authority"],"partnerOrganizations":[],"startYear":2023,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"The SFDA lists the project as a drug-safety initiative initiated in 2023; public scale or output metrics are not provided.","statusEvidenceDate":"2026-08-15","description":"Links pharmacogenomic biomarkers to pharmacovigilance through biomarker-associated medicine lists, label assessment and safety-signal review.","scaleSummary":"No public patient, medicine or signal count located.","dataTypes":["pharmacogenomic biomarkers","adverse-event reports","medicine labels","safety signals"],"accessionIds":[],"identifiers":[],"dataAccess":"Regulatory data; public initiative description only","primarySourceUrl":"https://www.sfda.gov.sa/en/drug-safety-initiatives","inclusionBasis":"Named national regulatory program explicitly integrating pharmacogenomics and pharmacovigilance.","evidenceGrade":"B","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"National regulatory initiative, not a recruited patient cohort; current outputs are not public.","sources":[{"id":"public:sa-sfda-pgx-pharmacovigilance:s01","type":"primary record source","rank":1,"url":"https://www.sfda.gov.sa/en/drug-safety-initiatives","evidenceGrade":"B","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-shgp","name":"Saudi Human Genome Program","displayTitle":"Saudi Human Genome Program","aliases":["Saudi Genome Program","Saudi Human Genome Project","SHGP","SGP"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Nationwide Saudi population and clinical referral network","projectType":"National population and clinical genomics umbrella program","domainGroup":"Human health and population genomics","researchDomain":"Population genomics, rare disease, precision medicine and pharmacogenomics","organismPopulation":"Saudi citizens, including healthy participants and patients with inherited disease","leadOrganizations":["King Abdulaziz City for Science and Technology (KACST)"],"partnerOrganizations":["King Faisal Specialist Hospital & Research Centre (KFSHRC)","National genome centers and hospitals","Thermo Fisher Scientific / Life Technologies","Pfizer"],"startYear":2013,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Technical launch was announced on 2013-12-09; the program was formally inaugurated under Vision 2030 on 2018-11-05, entered a stated second phase through a 2022 Pfizer MoU, and continued to be showcased in 2025.","statusEvidenceDate":"2025-12-31","description":"Saudi Arabia's national umbrella for population sequencing, rare-disease gene discovery, clinical diagnostics and precision-medicine translation.","scaleSummary":"Original goal of 100,000 genomes/exomes in five years; later official summary reports 61,177 samples, 7,500 pathogenic variants, including 3,000 variants associated with about 1,230 rare disorders, 134 papers and eight laboratories.","dataTypes":["whole-genome sequencing","whole-exome sequencing","targeted panels","clinical phenotypes","pharmacogenomics"],"accessionIds":[],"identifiers":[],"dataAccess":"Controlled national/clinical infrastructure; selected aggregate and publication outputs public","primarySourceUrl":"https://saudipedia.com/en/saudi-genome-program","inclusionBasis":"Flagship national genomics program with official launch history, multi-institution infrastructure, large reported sample volume and many child datasets.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"All alternate names are one umbrella. The 2018 Vision 2030 inauguration is a relaunch/formal inauguration, not a second project. Saudi Mendeliome, the national clinical-exome cohort and SHGP pharmacogenomics cohort are child outputs. The acronym SGP also refers to the separate Ministry of Health Saudi Genomics Platform.","sources":[{"id":"public:sa-shgp:s01","type":"primary record source","rank":1,"url":"https://saudipedia.com/en/saudi-genome-program","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-shgp:s02","type":"additional record source","rank":2,"url":"https://karger.com/bmh/article/8/1/60/854242/Population-Genome-Programs-across-the-Middle-East","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-shgp:s03","type":"additional record source","rank":3,"url":"https://www.prnewswire.com/news-releases/every-saudis-choice-to-have-genetic-code-mapped-to-transform-the-kingdoms-healthcare-234980971.html","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-shgp:s04","type":"additional record source","rank":4,"url":"https://www.spa.gov.sa/w1820918","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":4},{"id":"sa-shgp-clinical-exome","name":"SHGP National Clinical Exome Referral Cohort","displayTitle":"SHGP National Clinical Exome Referral Cohort","aliases":["First-Tier Clinical Exome Cohort"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Families referred from institutions nationwide","projectType":"National clinical rare-disease cohort; SHGP child dataset","domainGroup":"Human health and population genomics","researchDomain":"Rare-disease diagnostic genomics","organismPopulation":"Saudi families referred for clinical exome testing","leadOrganizations":["Saudi Human Genome Program","King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":["Saudi clinical referral network"],"startYear":null,"endYear":2019,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"Results from the completed nationwide referral series were published in 2019.","statusEvidenceDate":"2019-05-30","description":"Evaluated first-tier clinical exome testing at national scale and catalogued diagnoses and candidate disease genes in Saudi families.","scaleSummary":"3,310 clinical exome tests from 2,219 Saudi families.","dataTypes":["clinical whole-exome sequencing","phenotypes","family segregation"],"accessionIds":[],"identifiers":[],"dataAccess":"Aggregate publication results public; individual-level data controlled","primarySourceUrl":"https://pubmed.ncbi.nlm.nih.gov/31130284/","inclusionBasis":"Defined, large nationwide clinical-exome dataset that produced a national genetic-disease landscape.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"SHGP child cohort, not a separate program. Probable partial overlap with Saudi Mendeliome and PAVS source cohorts.","sources":[{"id":"public:sa-shgp-clinical-exome:s01","type":"primary record source","rank":1,"url":"https://pubmed.ncbi.nlm.nih.gov/31130284/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-shgp-clinical-exome:s02","type":"additional record source","rank":2,"url":"https://www.natureasia.com/en/nmiddleeast/article/10.1038/nmiddleeast.2019.78","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-shgp-mendeliome","name":"Saudi Mendeliome","displayTitle":"Saudi Mendeliome","aliases":["Mendeliome Study","Saudi Mendeliome Group"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Saudi rare-disease referral families","projectType":"National rare-disease diagnostic cohort; SHGP child project","domainGroup":"Human health and population genomics","researchDomain":"Mendelian disease genomics","organismPopulation":"Saudi patients and multiplex families with suspected Mendelian disease","leadOrganizations":["Saudi Human Genome Program","King Faisal Specialist Hospital & Research Centre (KFSHRC)"],"partnerOrganizations":["King Salman Center for Disability Research"],"startYear":null,"endYear":2015,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"The principal project paper was published in 2015 and describes a mature diagnostic cohort and panel resource.","statusEvidenceDate":"2015-06-24","description":"Developed a Mendelian-disease panel suite and applied it with exome sequencing to diagnose inherited disorders in highly consanguineous Saudi families.","scaleSummary":"Thirteen multiplex panels covering roughly 3,000 known Mendelian genes; mature cohort of 2,357 cases, with 43% diagnosed by panels and a further 11% by exome sequencing.","dataTypes":["targeted next-generation sequencing panels","whole-exome sequencing","family phenotypes"],"accessionIds":[],"identifiers":[],"dataAccess":"Aggregate results public; individual-level clinical data controlled","primarySourceUrl":"https://link.springer.com/article/10.1186/s13059-015-0693-2","inclusionBasis":"Named national-scale rare-disease cohort and diagnostic resource with thousands of cases and a peer-reviewed project paper.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Child of SHGP, not a separate national umbrella. Likely overlaps later national clinical-exome cases and the PAVS aggregate resource.","sources":[{"id":"public:sa-shgp-mendeliome:s01","type":"primary record source","rank":1,"url":"https://link.springer.com/article/10.1186/s13059-015-0693-2","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-shgp-mendeliome:s02","type":"additional record source","rank":2,"url":"https://doi.org/10.1126/science.aal0473","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":2},{"id":"sa-shgp-pharmacogenomics","name":"SHGP Population Pharmacogenomics Cohort","displayTitle":"SHGP Population Pharmacogenomics Cohort","aliases":["Saudi Pharmacogenomics Population Study"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"11,889 unrelated Saudi individuals","projectType":"National population pharmacogenomics dataset; SHGP child project","domainGroup":"Human health and population genomics","researchDomain":"Pharmacogenetic variation and actionable alleles","organismPopulation":"Unrelated Saudi individuals sampled through SHGP genome centers","leadOrganizations":["Saudi Human Genome Program"],"partnerOrganizations":["KACST-associated genome centers"],"startYear":2015,"endYear":2019,"lifecycleStatus":"completed","lifecycleGroup":"Completed / retained","statusBasis":"Samples and data were generated during 2015-2019 and the primary population analysis was published in 2022.","statusEvidenceDate":"2022-02-10","description":"Characterized frequencies and potential clinical actionability of pharmacogenetic alleles in the Saudi population.","scaleSummary":"1,928 participants tested on custom pharmacogenomic panels plus 9,961 exomes across eight pharmacogenes; 99.2% of panel-tested individuals carried at least one actionable allele.","dataTypes":["custom pharmacogenomics panel","whole-exome sequencing","allele frequencies"],"accessionIds":[],"identifiers":[],"dataAccess":"Aggregate publication data public; individual-level data controlled","primarySourceUrl":"https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0263137","inclusionBasis":"Large SHGP-derived population dataset with an explicit sample count and actionable pharmacogenomic outputs.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"SHGP child output, not a distinct national umbrella. Distinct from the KFSHRC clinical prescribing implementation program.","sources":[{"id":"public:sa-shgp-pharmacogenomics:s01","type":"primary record source","rank":1,"url":"https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0263137","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":1},{"id":"sa-sscdr","name":"Saudi Stem Cell Donor Registry","displayTitle":"Saudi Stem Cell Donor Registry","aliases":["SSCDR"],"countries":["Saudi Arabia"],"regionLabel":"Saudi Arabia","geographicScope":"Nationwide Saudi volunteer donor population","projectType":"National HLA-genotyped donor registry","domainGroup":"Data platforms, biobanks and infrastructure","researchDomain":"Population immunogenetics and transplant matching","organismPopulation":"Volunteer Saudi hematopoietic stem-cell donors","leadOrganizations":["King Abdullah International Medical Research Center (KAIMRC)"],"partnerOrganizations":["Ministry of National Guard Health Affairs"],"startYear":2011,"endYear":null,"lifecycleStatus":"active","lifecycleGroup":"Active / operational","statusBasis":"Established in 2011 and described as an active national registry in peer-reviewed reports through 2023.","statusEvidenceDate":"2023-12-20","description":"Recruits and HLA-types Saudi stem-cell donors to improve transplant matching and characterize Saudi HLA diversity.","scaleSummary":"Published snapshots include 28,927 NGS-typed donors, 64,315 donors used for a 2023 iPSC analysis and 75,145 recruited donors in a 2021 status report; long-term target approximately one million.","dataTypes":["HLA next-generation sequencing","donor registry data"],"accessionIds":[],"identifiers":[],"dataAccess":"Clinical registry/controlled; aggregate frequencies published","primarySourceUrl":"https://pubmed.ncbi.nlm.nih.gov/33781751/","inclusionBasis":"Long-running national genotyped donor registry with tens of thousands of participants and population-immunogenetics outputs.","evidenceGrade":"A","lastVerified":"2026-08-15","sourceKind":"editorially_curated","recordClass":"editorial_record","relatedRecordIds":[],"notes":"Counts are time-specific snapshots with different inclusion/typing criteria, not additive totals. This is a clinical donor registry rather than a conventional genome cohort and supplies HLA data for SBiPSCs.","sources":[{"id":"public:sa-sscdr:s01","type":"primary record source","rank":1,"url":"https://pubmed.ncbi.nlm.nih.gov/33781751/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-sscdr:s02","type":"additional record source","rank":2,"url":"https://pubmed.ncbi.nlm.nih.gov/33193311/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"},{"id":"public:sa-sscdr:s03","type":"additional record source","rank":3,"url":"https://pubmed.ncbi.nlm.nih.gov/38111036/","evidenceGrade":"A","sourceKind":"editorially_curated","lastVerified":"2026-08-15"}],"sourceCount":3}]}